ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf3g23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1P83298:FIBC_LUMRU Fibrinolytic enzyme, isozyme C - Lumbricus rub... 31 5.5
2Q95107:WASL_BOVIN Neural Wiskott-Aldrich syndrome protein - Bos ... 31 7.1
3A5DK47:DBP6_PICGU ATP-dependent RNA helicase DBP6 - Pichia guill... 31 7.1
4Q12830:BPTF_HUMAN Nucleosome remodeling factor subunit BPTF - Ho... 30 9.3

>P83298:FIBC_LUMRU Fibrinolytic enzyme, isozyme C - Lumbricus rubellus (Humus|
           earthworm)
          Length = 242
 Score = 31.2 bits (69), Expect = 5.5
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +2

Query: 236 VVAGSGSGLKDFPYTIGEPHASAWGSWTHHRGASKVLHARALPAS 370
           V+ G+ +   +FP+ + +   S  GSW+H  GAS +    AL AS
Sbjct: 1   VIGGTNASPGEFPWQLSQQRQS--GSWSHSCGASLLSSTSALSAS 43



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>Q95107:WASL_BOVIN Neural Wiskott-Aldrich syndrome protein - Bos taurus (Bovine)|
          Length = 505

 Score = 30.8 bits (68), Expect = 7.1
 Identities = 13/19 (68%), Positives = 13/19 (68%)
 Frame = +3

Query: 348 TLAPSPPPASRPGVGRLDP 404
           T AP PPP SRPGVG   P
Sbjct: 319 TAAPPPPPPSRPGVGAPPP 337



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>A5DK47:DBP6_PICGU ATP-dependent RNA helicase DBP6 - Pichia guilliermondii (Yeast)|
           (Candida guilliermondii)
          Length = 631

 Score = 30.8 bits (68), Expect = 7.1
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -2

Query: 760 IIMEDLHKLCNAFQVQPSTNRDYQLSTGSTNST 662
           II+ D H+L N     P+T ++Y+LS GS  S+
Sbjct: 416 IIVNDRHELVNELFTVPATLQEYKLSLGSARSS 448



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>Q12830:BPTF_HUMAN Nucleosome remodeling factor subunit BPTF - Homo sapiens (Human)|
          Length = 2907

 Score = 30.4 bits (67), Expect = 9.3
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
 Frame = -3

Query: 633  TSYSVAKAGISLTRASKLHPALRLLQGTC-----SYTAGPARTRPQSAERPS*NPR 481
            T+ S   AG    R SKL P +++ Q        S + GPA+ +PQ+A+ PS  P+
Sbjct: 2213 TTVSTTAAGTGEQRQSKLSPQMQVHQDKTLPPAQSSSVGPAKAQPQTAQ-PSARPQ 2267


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 134,850,964
Number of extensions: 2767594
Number of successful extensions: 7899
Number of sequences better than 10.0: 4
Number of HSP's gapped: 7893
Number of HSP's successfully gapped: 4
Length of query: 284
Length of database: 100,686,439
Length adjustment: 112
Effective length of query: 172
Effective length of database: 69,965,399
Effective search space: 12034048628
Effective search space used: 12034048628
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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