| Clone Name | FLbaf3g23 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 212 bits (107), Expect = 2e-51 Identities = 125/131 (95%) Strand = Plus / Minus Query: 214 aatgttcaagttcctcaaggacgtggtcgcgggatccggatcgggcctcaaggacttccc 273 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 34952384 aatgttcaagttcctcaaggaggtggtcgcgggatccggatcgggcctcaaggacttccc 34952325 Query: 274 ctacaccatcggcgagccccacgcctccgcctggggctcctggacgcaccaccgtggcgc 333 ||||||||||||||||||| |||||||||| |||||||| |||||||||||||| ||| | Sbjct: 34952324 ctacaccatcggcgagccctacgcctccgcgtggggctcgtggacgcaccaccgcggcac 34952265 Query: 334 ctccaaggtac 344 ||||||||||| Sbjct: 34952264 ctccaaggtac 34952254
>dbj|AP003446.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1529_G03 Length = 100635 Score = 212 bits (107), Expect = 2e-51 Identities = 125/131 (95%) Strand = Plus / Minus Query: 214 aatgttcaagttcctcaaggacgtggtcgcgggatccggatcgggcctcaaggacttccc 273 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 81748 aatgttcaagttcctcaaggaggtggtcgcgggatccggatcgggcctcaaggacttccc 81689 Query: 274 ctacaccatcggcgagccccacgcctccgcctggggctcctggacgcaccaccgtggcgc 333 ||||||||||||||||||| |||||||||| |||||||| |||||||||||||| ||| | Sbjct: 81688 ctacaccatcggcgagccctacgcctccgcgtggggctcgtggacgcaccaccgcggcac 81629 Query: 334 ctccaaggtac 344 ||||||||||| Sbjct: 81628 ctccaaggtac 81618
>ref|NM_001051179.1| Oryza sativa (japonica cultivar-group) Os01g0819900 (Os01g0819900) mRNA, complete cds Length = 2888 Score = 206 bits (104), Expect = 9e-50 Identities = 122/128 (95%) Strand = Plus / Plus Query: 214 aatgttcaagttcctcaaggacgtggtcgcgggatccggatcgggcctcaaggacttccc 273 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 229 aatgttcaagttcctcaaggaggtggtcgcgggatccggatcgggcctcaaggacttccc 288 Query: 274 ctacaccatcggcgagccccacgcctccgcctggggctcctggacgcaccaccgtggcgc 333 ||||||||||||||||||| |||||||||| |||||||| |||||||||||||| ||| | Sbjct: 289 ctacaccatcggcgagccctacgcctccgcgtggggctcgtggacgcaccaccgcggcac 348 Query: 334 ctccaagg 341 |||||||| Sbjct: 349 ctccaagg 356
>dbj|AK101811.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033066M22, full insert sequence Length = 1788 Score = 206 bits (104), Expect = 9e-50 Identities = 122/128 (95%) Strand = Plus / Plus Query: 214 aatgttcaagttcctcaaggacgtggtcgcgggatccggatcgggcctcaaggacttccc 273 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 191 aatgttcaagttcctcaaggaggtggtcgcgggatccggatcgggcctcaaggacttccc 250 Query: 274 ctacaccatcggcgagccccacgcctccgcctggggctcctggacgcaccaccgtggcgc 333 ||||||||||||||||||| |||||||||| |||||||| |||||||||||||| ||| | Sbjct: 251 ctacaccatcggcgagccctacgcctccgcgtggggctcgtggacgcaccaccgcggcac 310 Query: 334 ctccaagg 341 |||||||| Sbjct: 311 ctccaagg 318
>dbj|AK067401.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013105B05, full insert sequence Length = 2889 Score = 206 bits (104), Expect = 9e-50 Identities = 122/128 (95%) Strand = Plus / Plus Query: 214 aatgttcaagttcctcaaggacgtggtcgcgggatccggatcgggcctcaaggacttccc 273 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 230 aatgttcaagttcctcaaggaggtggtcgcgggatccggatcgggcctcaaggacttccc 289 Query: 274 ctacaccatcggcgagccccacgcctccgcctggggctcctggacgcaccaccgtggcgc 333 ||||||||||||||||||| |||||||||| |||||||| |||||||||||||| ||| | Sbjct: 290 ctacaccatcggcgagccctacgcctccgcgtggggctcgtggacgcaccaccgcggcac 349 Query: 334 ctccaagg 341 |||||||| Sbjct: 350 ctccaagg 357
>emb|AL954861.11| Zebrafish DNA sequence from clone CH211-8I17, complete sequence Length = 175026 Score = 52.0 bits (26), Expect = 0.003 Identities = 29/30 (96%) Strand = Plus / Minus Query: 713 ttgaacttgaaatgcattgcataatttgtg 742 ||||||||||||||||||||||| |||||| Sbjct: 96606 ttgaacttgaaatgcattgcatattttgtg 96577
>emb|AL034374.2|HS483K16 Human DNA sequence from clone RP3-483K16 on chromosome 6p12.1-21.1 Contains the gene for homolog of yeast long chain polyunsaturated fatty acid elongation enzyme 2 (HELO1), a 40S Ribosomal protein (RPS16) pseudogene, a 60S Ribosomal protein (RPL31) pseudogene and CpG islands, complete sequence Length = 101270 Score = 44.1 bits (22), Expect = 0.81 Identities = 22/22 (100%) Strand = Plus / Plus Query: 347 cacgctcgcgccctccccgcct 368 |||||||||||||||||||||| Sbjct: 94798 cacgctcgcgccctccccgcct 94819
>gb|AC192340.2| Pan troglodytes BAC clone CH251-483K21 from chromosome 7, complete sequence Length = 209771 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 762 cattgtattgaagtgtgaaat 782 ||||||||||||||||||||| Sbjct: 26177 cattgtattgaagtgtgaaat 26157
>ref|XM_361198.1| Magnaporthe grisea 70-15 hypothetical protein (MG03741.4) partial mRNA Length = 4725 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 741 tggaggtcctccattatgatc 761 ||||||||||||||||||||| Sbjct: 3440 tggaggtcctccattatgatc 3420
>gb|AC122898.4| Mus musculus BAC clone RP23-71K9 from 1, complete sequence Length = 230945 Score = 42.1 bits (21), Expect = 3.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 353 cgcgccctccccgcctcccgcctcc 377 ||||||| ||||||||||||||||| Sbjct: 35649 cgcgccccccccgcctcccgcctcc 35673
>gb|AC007558.3| Homo sapiens BAC clone RP11-148A10 from 7, complete sequence Length = 120141 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 762 cattgtattgaagtgtgaaat 782 ||||||||||||||||||||| Sbjct: 63096 cattgtattgaagtgtgaaat 63076
>gb|AC119428.2| Homo sapiens chromosome 1 clone RP11-117D22, complete sequence Length = 67437 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 570 aggcagggtgcagttttgaag 590 ||||||||||||||||||||| Sbjct: 18409 aggcagggtgcagttttgaag 18389
>gb|AC133952.4| Mus musculus BAC clone RP23-114H2 from 1, complete sequence Length = 236382 Score = 42.1 bits (21), Expect = 3.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 353 cgcgccctccccgcctcccgcctcc 377 ||||||| ||||||||||||||||| Sbjct: 70867 cgcgccccccccgcctcccgcctcc 70843
>gb|M88299.1|MUSPOUDOMA Mouse brain-1 POU-domain protein, complete cds Length = 4000 Score = 42.1 bits (21), Expect = 3.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 353 cgcgccctccccgcctcccgcctcc 377 ||||||| ||||||||||||||||| Sbjct: 1916 cgcgccccccccgcctcccgcctcc 1892 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 105,309,343 Number of extensions: 5284167 Number of successful extensions: 96975 Number of sequences better than 10.0: 14 Number of HSP's gapped: 96975 Number of HSP's successfully gapped: 14 Length of query: 854 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 832 Effective length of database: 18,508,616,841 Effective search space: 15399169211712 Effective search space used: 15399169211712 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)