ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf3g23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 212 2e-51
2dbj|AP003446.3| Oryza sativa (japonica cultivar-group) genomic D... 212 2e-51
3ref|NM_001051179.1| Oryza sativa (japonica cultivar-group) Os01g... 206 9e-50
4dbj|AK101811.1| Oryza sativa (japonica cultivar-group) cDNA clon... 206 9e-50
5dbj|AK067401.1| Oryza sativa (japonica cultivar-group) cDNA clon... 206 9e-50
6emb|AL954861.11| Zebrafish DNA sequence from clone CH211-8I17, c... 52 0.003
7emb|AL034374.2|HS483K16 Human DNA sequence from clone RP3-483K16... 44 0.81
8gb|AC192340.2| Pan troglodytes BAC clone CH251-483K21 from chrom... 42 3.2
9ref|XM_361198.1| Magnaporthe grisea 70-15 hypothetical protein (... 42 3.2
10gb|AC122898.4| Mus musculus BAC clone RP23-71K9 from 1, complete... 42 3.2
11gb|AC007558.3| Homo sapiens BAC clone RP11-148A10 from 7, comple... 42 3.2
12gb|AC119428.2| Homo sapiens chromosome 1 clone RP11-117D22, comp... 42 3.2
13gb|AC133952.4| Mus musculus BAC clone RP23-114H2 from 1, complet... 42 3.2
14gb|M88299.1|MUSPOUDOMA Mouse brain-1 POU-domain protein, complet... 42 3.2

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1
          Length = 43261740
 Score =  212 bits (107), Expect = 2e-51
 Identities = 125/131 (95%)
 Strand = Plus / Minus

                                                                            
Query: 214      aatgttcaagttcctcaaggacgtggtcgcgggatccggatcgggcctcaaggacttccc 273
                ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 34952384 aatgttcaagttcctcaaggaggtggtcgcgggatccggatcgggcctcaaggacttccc 34952325

                                                                            
Query: 274      ctacaccatcggcgagccccacgcctccgcctggggctcctggacgcaccaccgtggcgc 333
                ||||||||||||||||||| |||||||||| |||||||| |||||||||||||| ||| |
Sbjct: 34952324 ctacaccatcggcgagccctacgcctccgcgtggggctcgtggacgcaccaccgcggcac 34952265

                           
Query: 334      ctccaaggtac 344
                |||||||||||
Sbjct: 34952264 ctccaaggtac 34952254



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>dbj|AP003446.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1529_G03
          Length = 100635

 Score =  212 bits (107), Expect = 2e-51
 Identities = 125/131 (95%)
 Strand = Plus / Minus

                                                                         
Query: 214   aatgttcaagttcctcaaggacgtggtcgcgggatccggatcgggcctcaaggacttccc 273
             ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 81748 aatgttcaagttcctcaaggaggtggtcgcgggatccggatcgggcctcaaggacttccc 81689

                                                                         
Query: 274   ctacaccatcggcgagccccacgcctccgcctggggctcctggacgcaccaccgtggcgc 333
             ||||||||||||||||||| |||||||||| |||||||| |||||||||||||| ||| |
Sbjct: 81688 ctacaccatcggcgagccctacgcctccgcgtggggctcgtggacgcaccaccgcggcac 81629

                        
Query: 334   ctccaaggtac 344
             |||||||||||
Sbjct: 81628 ctccaaggtac 81618



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>ref|NM_001051179.1| Oryza sativa (japonica cultivar-group) Os01g0819900 (Os01g0819900)
           mRNA, complete cds
          Length = 2888

 Score =  206 bits (104), Expect = 9e-50
 Identities = 122/128 (95%)
 Strand = Plus / Plus

                                                                       
Query: 214 aatgttcaagttcctcaaggacgtggtcgcgggatccggatcgggcctcaaggacttccc 273
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 229 aatgttcaagttcctcaaggaggtggtcgcgggatccggatcgggcctcaaggacttccc 288

                                                                       
Query: 274 ctacaccatcggcgagccccacgcctccgcctggggctcctggacgcaccaccgtggcgc 333
           ||||||||||||||||||| |||||||||| |||||||| |||||||||||||| ||| |
Sbjct: 289 ctacaccatcggcgagccctacgcctccgcgtggggctcgtggacgcaccaccgcggcac 348

                   
Query: 334 ctccaagg 341
           ||||||||
Sbjct: 349 ctccaagg 356



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>dbj|AK101811.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033066M22, full
           insert sequence
          Length = 1788

 Score =  206 bits (104), Expect = 9e-50
 Identities = 122/128 (95%)
 Strand = Plus / Plus

                                                                       
Query: 214 aatgttcaagttcctcaaggacgtggtcgcgggatccggatcgggcctcaaggacttccc 273
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 191 aatgttcaagttcctcaaggaggtggtcgcgggatccggatcgggcctcaaggacttccc 250

                                                                       
Query: 274 ctacaccatcggcgagccccacgcctccgcctggggctcctggacgcaccaccgtggcgc 333
           ||||||||||||||||||| |||||||||| |||||||| |||||||||||||| ||| |
Sbjct: 251 ctacaccatcggcgagccctacgcctccgcgtggggctcgtggacgcaccaccgcggcac 310

                   
Query: 334 ctccaagg 341
           ||||||||
Sbjct: 311 ctccaagg 318



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>dbj|AK067401.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013105B05, full
           insert sequence
          Length = 2889

 Score =  206 bits (104), Expect = 9e-50
 Identities = 122/128 (95%)
 Strand = Plus / Plus

                                                                       
Query: 214 aatgttcaagttcctcaaggacgtggtcgcgggatccggatcgggcctcaaggacttccc 273
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 230 aatgttcaagttcctcaaggaggtggtcgcgggatccggatcgggcctcaaggacttccc 289

                                                                       
Query: 274 ctacaccatcggcgagccccacgcctccgcctggggctcctggacgcaccaccgtggcgc 333
           ||||||||||||||||||| |||||||||| |||||||| |||||||||||||| ||| |
Sbjct: 290 ctacaccatcggcgagccctacgcctccgcgtggggctcgtggacgcaccaccgcggcac 349

                   
Query: 334 ctccaagg 341
           ||||||||
Sbjct: 350 ctccaagg 357



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>emb|AL954861.11| Zebrafish DNA sequence from clone CH211-8I17, complete sequence
          Length = 175026

 Score = 52.0 bits (26), Expect = 0.003
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                           
Query: 713   ttgaacttgaaatgcattgcataatttgtg 742
             ||||||||||||||||||||||| ||||||
Sbjct: 96606 ttgaacttgaaatgcattgcatattttgtg 96577



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>emb|AL034374.2|HS483K16 Human DNA sequence from clone RP3-483K16 on chromosome 6p12.1-21.1
             Contains the gene for homolog of yeast long chain
             polyunsaturated fatty acid elongation enzyme 2 (HELO1), a
             40S Ribosomal protein (RPS16) pseudogene, a 60S Ribosomal
             protein (RPL31) pseudogene and CpG islands, complete
             sequence
          Length = 101270

 Score = 44.1 bits (22), Expect = 0.81
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 347   cacgctcgcgccctccccgcct 368
             ||||||||||||||||||||||
Sbjct: 94798 cacgctcgcgccctccccgcct 94819



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>gb|AC192340.2| Pan troglodytes BAC clone CH251-483K21 from chromosome 7, complete
             sequence
          Length = 209771

 Score = 42.1 bits (21), Expect = 3.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 762   cattgtattgaagtgtgaaat 782
             |||||||||||||||||||||
Sbjct: 26177 cattgtattgaagtgtgaaat 26157



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>ref|XM_361198.1| Magnaporthe grisea 70-15 hypothetical protein (MG03741.4) partial
            mRNA
          Length = 4725

 Score = 42.1 bits (21), Expect = 3.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 741  tggaggtcctccattatgatc 761
            |||||||||||||||||||||
Sbjct: 3440 tggaggtcctccattatgatc 3420



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>gb|AC122898.4| Mus musculus BAC clone RP23-71K9 from 1, complete sequence
          Length = 230945

 Score = 42.1 bits (21), Expect = 3.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 353   cgcgccctccccgcctcccgcctcc 377
             ||||||| |||||||||||||||||
Sbjct: 35649 cgcgccccccccgcctcccgcctcc 35673



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>gb|AC007558.3| Homo sapiens BAC clone RP11-148A10 from 7, complete sequence
          Length = 120141

 Score = 42.1 bits (21), Expect = 3.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 762   cattgtattgaagtgtgaaat 782
             |||||||||||||||||||||
Sbjct: 63096 cattgtattgaagtgtgaaat 63076



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>gb|AC119428.2| Homo sapiens chromosome 1 clone RP11-117D22, complete sequence
          Length = 67437

 Score = 42.1 bits (21), Expect = 3.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 570   aggcagggtgcagttttgaag 590
             |||||||||||||||||||||
Sbjct: 18409 aggcagggtgcagttttgaag 18389



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>gb|AC133952.4| Mus musculus BAC clone RP23-114H2 from 1, complete sequence
          Length = 236382

 Score = 42.1 bits (21), Expect = 3.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 353   cgcgccctccccgcctcccgcctcc 377
             ||||||| |||||||||||||||||
Sbjct: 70867 cgcgccccccccgcctcccgcctcc 70843



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>gb|M88299.1|MUSPOUDOMA Mouse brain-1 POU-domain protein, complete cds
          Length = 4000

 Score = 42.1 bits (21), Expect = 3.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 353  cgcgccctccccgcctcccgcctcc 377
            ||||||| |||||||||||||||||
Sbjct: 1916 cgcgccccccccgcctcccgcctcc 1892


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 105,309,343
Number of extensions: 5284167
Number of successful extensions: 96975
Number of sequences better than 10.0: 14
Number of HSP's gapped: 96975
Number of HSP's successfully gapped: 14
Length of query: 854
Length of database: 18,610,659,111
Length adjustment: 22
Effective length of query: 832
Effective length of database: 18,508,616,841
Effective search space: 15399169211712
Effective search space used: 15399169211712
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
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