ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf3g08 |
|---|---|
| Clone Library Name | barley_pub |
>Q0P5A6:PSMD5_BOVIN 26S proteasome non-ATPase regulatory subunit 5 - Bos taurus (Bovine)| Length = 503 Score = 64.3 bits (155), Expect = 2e-09 Identities = 86/459 (18%), Positives = 192/459 (41%), Gaps = 14/459 (3%) Frame = +1 Query: 193 AVRQFLEQFPLHDL--------LGALQSQGAEPETVETV--AACLDKVFSSRYGASLLPS 342 A++ L+ PL +L LG L S E +T + L+++ + + + Sbjct: 24 ALQSLLQSVPLSELREQAAELRLGPLFSLLNENHREQTTLCVSILERLLQALEPVHVARN 83 Query: 343 YAAFIEAGLLTNLNNIRQLACKAVVHLLDKAEDSDVAVDTFVQHNLYPLLINCLIEGDEE 522 ++ GL ++++ L V ++ E+SD + L ++ C+ + Sbjct: 84 LRVDLQRGLTHPNDSVKILTLSQVGRIV---ENSDAVTEILNNAELLKQIVYCIGGENLS 140 Query: 523 ISAIVLDAIKRLAEIPKRTDIIFPPDGQGLQLNKVAAQSSSMARIRILSLIAKLFAASSC 702 ++ + ++ R++ + +F + L K +++ + R R+ LI ++ + S Sbjct: 141 VAKTAIKSLSRISLTQAGLEALF--ESNLLDDLKSVMKTNDIVRYRVYELIVEISSVSPE 198 Query: 703 TATAIRDSNLLSLFEDEIKDRKDMLKTLSALEVLYELAEHPHSNMFLLKTSLLQHITDVI 882 + S L++ E+ +D+L + +E++ LA H +L + ++ I+++I Sbjct: 199 SLNCCTTSGLVTQLLRELTG-EDVLVRATCIEMVTSLACTHHGRQYLAQEGVIDQISNII 257 Query: 883 NDPSADSIVRSRASLISGRLLASAD-AFMTIEQSCVTNLLLAIDKILRTEESQNTDEIES 1059 AD + + G + + A M Q + ++K+ ESQ+ I Sbjct: 258 VGADADPF---SSFYLPGFVKFFGNLAIMDSPQQICERYPIFMEKVFEMTESQDPTMIGV 314 Query: 1060 ALETLGLIGTTSQGACLLFSDPPNVAKHVVEMSFDRQGRGKQL--AALHAFGSICGVDRE 1233 A++T+G++G+ +G +L + ++++ + + +L L A S+ + E Sbjct: 315 AVDTIGILGSNVEGKQVLQKTGTRFERLLMKIGYQAKNASTELKIRCLDALSSLFYLPPE 374 Query: 1234 EDQMKLDDYQAEECLKRLVYSAASNSPKLTPSALLLSILQQD-PDVRIAGYRVLSGLVVR 1410 + DD L R+ S S+ + P L I Q P++ A +V + + + Sbjct: 375 Q----TDD------LLRMTESWFSSLSR-DPLELFRGISNQPFPELHCAALKVFTAIANQ 423 Query: 1411 EWCLREVCSKPEIIGVVTDPKMETTKLGMEARYACCVAI 1527 W + + + P + V D +E K +A+Y A+ Sbjct: 424 PWAQKLMFNSPGFVEYVMDRSVEHDKASKDAKYELVKAL 462
>Q16401:PSMD5_HUMAN 26S proteasome non-ATPase regulatory subunit 5 - Homo sapiens (Human)| Length = 504 Score = 62.4 bits (150), Expect = 6e-09 Identities = 81/445 (18%), Positives = 181/445 (40%), Gaps = 1/445 (0%) Frame = +1 Query: 196 VRQFLEQFPLHDLLGALQSQGAEPETVETVAACLDKVFSSRYGASLLPSYAAFIEAGLLT 375 +RQ + L L L E T+ + L+++ + + + ++ GL+ Sbjct: 37 LRQQAAELRLGPLFSLLNENHREKTTL--CVSILERLLQAMEPVHVARNLRVDLQRGLIH 94 Query: 376 NLNNIRQLACKAVVHLLDKAEDSDVAVDTFVQHNLYPLLINCLIEGDEEISAIVLDAIKR 555 ++++ L + ++ E+SD + L ++ C+ + ++ + ++ R Sbjct: 95 PDDSVKILTLSQIGRIV---ENSDAVTEILNNAELLKQIVYCIGGENLSVAKAAIKSLSR 151 Query: 556 LAEIPKRTDIIFPPDGQGLQLNKVAAQSSSMARIRILSLIAKLFAASSCTATAIRDSNLL 735 ++ + +F + L K +++ + R R+ LI ++ + S + S L+ Sbjct: 152 ISLTQAGLEALF--ESNLLDDLKSVMKTNDIVRYRVYELIIEISSVSPESLNYCTTSGLV 209 Query: 736 SLFEDEIKDRKDMLKTLSALEVLYELAEHPHSNMFLLKTSLLQHITDVINDPSADSIVRS 915 + E+ +D+L + +E++ LA H +L + ++ I+++I ADS S Sbjct: 210 TQLLRELTG-EDVLVRATCIEMVTSLAYTHHGRQYLAQEGVIDQISNII--VGADSDPFS 266 Query: 916 RASLISGRLLASADAFMTIEQSCVTNLLLAIDKILRTEESQNTDEIESALETLGLIGTTS 1095 L A M Q + ++K+ ESQ+ I A++T+G++G+ Sbjct: 267 SFYLPGFVKFFGNLAVMDSPQQICERYPIFVEKVFEMIESQDPTMIGVAVDTVGILGSNV 326 Query: 1096 QGACLLFSDPPNVAKHVVEMSFDRQGRGKQLAALHAFGSICGVDREEDQMKLDDYQAEEC 1275 +G +L + ++ + + +L I +D + L Q + Sbjct: 327 EGKQVLQKTGTRFERLLMRIGHQSKNAPVEL-------KIRCLDAISSLLYLPPEQQTDD 379 Query: 1276 LKRLVYSAASNSPKLTPSALLLSILQQD-PDVRIAGYRVLSGLVVREWCLREVCSKPEII 1452 L R+ S S+ + P L I Q P++ A +V + + + W + + + P + Sbjct: 380 LLRMTESWFSSLSR-DPLELFRGISSQPFPELHCAALKVFTAIANQPWAQKLMFNSPGFV 438 Query: 1453 GVVTDPKMETTKLGMEARYACCVAI 1527 V D +E K +A+Y A+ Sbjct: 439 EYVVDRSVEHDKASKDAKYELVKAL 463
>Q5IFJ8:PSMD5_MACFA 26S proteasome non-ATPase regulatory subunit 5 - Macaca fascicularis| (Crab eating macaque) (Cynomolgus monkey) Length = 504 Score = 59.3 bits (142), Expect = 5e-08 Identities = 84/456 (18%), Positives = 185/456 (40%), Gaps = 11/456 (2%) Frame = +1 Query: 193 AVRQFLEQFPLHDL--------LGALQSQGAEPETVETV--AACLDKVFSSRYGASLLPS 342 A+ L+ PL++L LG L S E +T + L+++ + + + Sbjct: 24 ALHSVLQAVPLNELREQAAELRLGPLFSLLNENHREKTALCVSILERLLQAMEPVHVARN 83 Query: 343 YAAFIEAGLLTNLNNIRQLACKAVVHLLDKAEDSDVAVDTFVQHNLYPLLINCLIEGDEE 522 ++ GL+ ++++ L + ++ E+SD + L ++ C+ + Sbjct: 84 LRVDLQRGLIHPDDSVKILTLSQIGRIV---ENSDAVTEILNNAELLKQIVYCIGGENLS 140 Query: 523 ISAIVLDAIKRLAEIPKRTDIIFPPDGQGLQLNKVAAQSSSMARIRILSLIAKLFAASSC 702 ++ + ++ R++ + +F + L K +++ + R R+ LI ++ + S Sbjct: 141 VAKAAIKSLSRISLTQAGLEALF--ESNLLDDLKSVMKTNDIVRYRVYELIVEISSVSPE 198 Query: 703 TATAIRDSNLLSLFEDEIKDRKDMLKTLSALEVLYELAEHPHSNMFLLKTSLLQHITDVI 882 + S L++ E+ +D+L + +E++ LA H +L + ++ I+++I Sbjct: 199 SLNYCTTSGLVTQLLRELTG-EDVLVRATCIEMVTSLAYTHHGRQYLAQEGVIDQISNII 257 Query: 883 NDPSADSIVRSRASLISGRLLASADAFMTIEQSCVTNLLLAIDKILRTEESQNTDEIESA 1062 ADS S L A M Q + ++K+ ESQ+ A Sbjct: 258 --VGADSDPFSSFYLPGFVKFFGNLAVMDSPQQICERYPIFVEKVFEMTESQDPTMTGVA 315 Query: 1063 LETLGLIGTTSQGACLLFSDPPNVAKHVVEMSFDRQGRGKQLAALHAFGSICGVDREEDQ 1242 ++T+G++G+ +G +L + ++ + + +L I +D Sbjct: 316 VDTVGILGSNVEGKQVLQKTGTRFERLLMRIGHQSKNAPVEL-------KIRCLDAISSL 368 Query: 1243 MKLDDYQAEECLKRLVYSAASNSPKLTPSALLLSILQQD-PDVRIAGYRVLSGLVVREWC 1419 + L Q + L R+ S S + P L I Q P++ A +V + + + W Sbjct: 369 LYLPPEQQTDDLLRMTESWFSALSR-DPLELFRGISSQPFPELHCAALKVFTAIANQPWA 427 Query: 1420 LREVCSKPEIIGVVTDPKMETTKLGMEARYACCVAI 1527 + + + P + V D +E K +A+Y A+ Sbjct: 428 QKLMFNIPGFVEYVVDRSVEQDKSSKDAKYELVKAL 463
>O77645:STP2_CANFA Nuclear transition protein 2 - Canis familiaris (Dog)| Length = 129 Score = 36.2 bits (82), Expect = 0.49 Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 13/65 (20%) Frame = -2 Query: 1795 HPRPRHTSSVKKHSCI*CTCIKH-----RGCSVSRP--------NSSKGHLKTSPWYQPP 1655 H +P S + H+C CTC H + CS SR +SS GH SP P Sbjct: 12 HTQPHSNSRPQGHTCSQCTCSSHCQTCSQSCSQSRSSSQSPTGHHSSSGHQSQSP---HP 68 Query: 1654 AVPPR 1640 +PPR Sbjct: 69 TLPPR 73
>Q5SVZ6:ZMYM1_HUMAN Zinc finger MYM-type protein 1 - Homo sapiens (Human)| Length = 1142 Score = 33.9 bits (76), Expect = 2.4 Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 1/70 (1%) Frame = +1 Query: 703 TATAIRDSNLLSLFEDEIKDR-KDMLKTLSALEVLYELAEHPHSNMFLLKTSLLQHITDV 879 + +++ N L L E KD+ ++ + +++ Y + + ++KT +LQ I + Sbjct: 577 SVSSVNKGNFLELLEMRAKDKGEETFRLMNSQVDFYNSTQIQSDIIEIIKTEMLQDIVNE 636 Query: 880 INDPSADSIV 909 IND SA SI+ Sbjct: 637 INDSSAFSII 646
>Q9V2G4:RFCS_PYRAB Replication factor C small subunit - Pyrococcus abyssi| Length = 1437 Score = 33.9 bits (76), Expect = 2.4 Identities = 23/93 (24%), Positives = 46/93 (49%), Gaps = 8/93 (8%) Frame = +1 Query: 1015 ILRTEESQNTDEIESALETLGLIGTTSQGACLLFSDPPNVAKHVVEMSFDRQGRGKQLAA 1194 I+ T + ++I AL LG++ ++ SDP NV++ + E+ F + + ++ A Sbjct: 280 IVSTAGKEIAEQISYALAGLGIVAEVDDKGSVIISDPENVSRFLDEIGFSVEEKKEEAKA 339 Query: 1195 LHAFGSI---CGVDRE-----EDQMKLDDYQAE 1269 L ++ VD+E +++KL Y+ E Sbjct: 340 LIKKSTLNLGIYVDKELISYVREKLKLSFYENE 372
>Q40884:MAPK_PETHY Mitogen-activated protein kinase homolog 1 - Petunia hybrida| (Petunia) Length = 384 Score = 32.0 bits (71), Expect = 9.2 Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 6/62 (9%) Frame = +1 Query: 1210 SICGVDREEDQMKLDDYQAEECLKRLVYSAASNSPKLTPSA--LLLSILQQ----DPDVR 1371 +I G REED +D+ +A + +K L YS + +L P+A L + +LQ+ DP R Sbjct: 248 NILGSQREEDIEFIDNPKARKYIKSLPYSPGTPFSRLYPNAHPLAIDLLQRMLVFDPSKR 307 Query: 1372 IA 1377 I+ Sbjct: 308 IS 309
>Q2KI54:ARMC8_BOVIN Armadillo repeat-containing protein 8 - Bos taurus (Bovine)| Length = 673 Score = 32.0 bits (71), Expect = 9.2 Identities = 16/50 (32%), Positives = 34/50 (68%), Gaps = 1/50 (2%) Frame = +1 Query: 724 SNLLSLFEDEIKDRKDMLKTLSALEVLYELAEHPHSNMF-LLKTSLLQHI 870 SNL+ E+ ++R+D L+ + +++L++L++ P SN+ KT+L Q++ Sbjct: 623 SNLVWNEEEGSQERQDKLRDMGIVDILHKLSQSPDSNLCDKAKTALQQYL 672 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 320,584,721 Number of extensions: 6768780 Number of successful extensions: 18877 Number of sequences better than 10.0: 8 Number of HSP's gapped: 18866 Number of HSP's successfully gapped: 8 Length of query: 625 Length of database: 100,686,439 Length adjustment: 119 Effective length of query: 506 Effective length of database: 68,045,334 Effective search space: 34430939004 Effective search space used: 34430939004 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
