ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf5m16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Q9CCR5:PYRB_MYCLE Aspartate carbamoyltransferase - Mycobacterium... 34 0.66
2Q8ZZC7:PYRC_PYRAE Dihydroorotase - Pyrobaculum aerophilum 30 7.3
3P53258:GYP2_YEAST GTPase-activating protein GYP2 - Saccharomyces... 30 7.3

>Q9CCR5:PYRB_MYCLE Aspartate carbamoyltransferase - Mycobacterium leprae|
          Length = 321
 Score = 33.9 bits (76), Expect = 0.66
 Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = +2

Query: 212 VDGYYLSIEVSADLVLPRAKTVRQLRKRAQVLKGGSFGS--GTTIVYSLTEAEKLLL 376
           VDG+  ++    D  LP A  V  LR +A+ + GG F S    + +Y LTE  + LL
Sbjct: 204 VDGWPATVSCDFDAELPAADAVLMLRVQAERMNGGFFPSVREYSCLYGLTERRQALL 260



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>Q8ZZC7:PYRC_PYRAE Dihydroorotase - Pyrobaculum aerophilum|
          Length = 383

 Score = 30.4 bits (67), Expect = 7.3
 Identities = 21/61 (34%), Positives = 26/61 (42%)
 Frame = -3

Query: 295 PFAQLAYSLRTGQNKISTHFD*KVVAINKFHLFNRHTAAALAGWSIVPDGPSHCLMRSHP 116
           P A+LA   RT Q    T      V I+  H+    TA A  GW+ V   P H L+    
Sbjct: 173 PIAELACVERTRQMAFKTG-----VKIHLTHITLSQTAEAARGWATVDATPHHLLLDVEN 227

Query: 115 C 113
           C
Sbjct: 228 C 228



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>P53258:GYP2_YEAST GTPase-activating protein GYP2 - Saccharomyces cerevisiae (Baker's|
           yeast)
          Length = 950

 Score = 30.4 bits (67), Expect = 7.3
 Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
 Frame = +2

Query: 620 GNANMGFEEFLQFLYVWYPSTR-CDLNHFALW*KKKKN 730
           G++NMGFE F+QFL  +  S R C+ +    + K+K+N
Sbjct: 568 GSSNMGFEVFIQFLSKFCDSCRPCEKDKDPAFRKQKRN 605


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 125,232,263
Number of extensions: 2740556
Number of successful extensions: 6040
Number of sequences better than 10.0: 3
Number of HSP's gapped: 6039
Number of HSP's successfully gapped: 3
Length of query: 244
Length of database: 100,686,439
Length adjustment: 110
Effective length of query: 134
Effective length of database: 70,513,989
Effective search space: 9448874526
Effective search space used: 9448874526
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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