>O74442:UBP16_SCHPO Probable ubiquitin carboxyl-terminal hydrolase 16 -|
           Schizosaccharomyces pombe (Fission yeast)
          Length = 457
 Score = 31.2 bits (69), Expect = 7.2
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +3

Query: 93  YHGDPHVMCYIQNVGAMHPSGFSATTGHMY-FCISSS 200
           Y  DP+  C+ + +G +  +G S  +GH Y FC SS+
Sbjct: 361 YMSDPNCSCWYELIGVLVHAGGSTRSGHYYSFCKSSN 397

>Q5XG87:POLS_HUMAN DNA polymerase sigma - Homo sapiens (Human)|
          Length = 542

 Score = 31.2 bits (69), Expect = 7.3
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
 Frame = +1

Query: 229 KSWGTSCTVPP---MRIRGTTRIAAVGSDSGELREEKSPLPNKAAAISSDPG*LPGKSSA 399
           + WG+     P    RI+   RIA    +  + RE +SP   +     S P  L   SSA
Sbjct: 300 EKWGSKAHPSPGMDSRIKIKERIATCNGEQTQNREPESPYGQRLTLSLSSPQLLSSGSSA 359

Query: 400 SNKSSL 417
           S+ SSL
Sbjct: 360 SSVSSL 365

>Q3B8K3:RT24B_XENLA 28S ribosomal protein S24-B, mitochondrial precursor - Xenopus|
           laevis (African clawed frog)
          Length = 170

 Score = 30.8 bits (68), Expect = 9.4
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 879 AHCLLVSTFYVRKYGRHKHSFYYGYTETCMKSSYIC 986
           A+ L++   ++RK    K  F  GYTET +   Y C
Sbjct: 117 ANLLIICAIFIRKMPTQKFYFLIGYTETLLSFLYKC 152

>Q6NTS3:RT24A_XENLA 28S ribosomal protein S24-A, mitochondrial precursor - Xenopus|
           laevis (African clawed frog)
          Length = 170

 Score = 30.8 bits (68), Expect = 9.4
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 879 AHCLLVSTFYVRKYGRHKHSFYYGYTETCMKSSYIC 986
           A+ L++   ++RK    K  F  GYTET +   Y C
Sbjct: 117 ANLLIICAIFIRKMPTQKFYFLIGYTETLLSFLYKC 152


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 178,688,589
Number of extensions: 3996131
Number of successful extensions: 9464
Number of sequences better than 10.0: 4
Number of HSP's gapped: 9459
Number of HSP's successfully gapped: 4
Length of query: 344
Length of database: 100,686,439
Length adjustment: 114
Effective length of query: 230
Effective length of database: 69,416,809
Effective search space: 15965866070
Effective search space used: 15965866070
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)