| Clone Name | FLbaf3e02 |
|---|---|
| Clone Library Name | barley_pub |
>emb|CT835041.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA121F24, full insert sequence Length = 965 Score = 63.9 bits (32), Expect = 1e-06 Identities = 62/72 (86%) Strand = Plus / Plus Query: 633 gatagagaaagatgcagaggaagccgaggccctaatccacaaggttgaagagatagaaaa 692 ||||||| | ||||| ||| ||||||||||||||||||| |||||||| |||||| | || Sbjct: 570 gatagaggatgatgccgagaaagccgaggccctaatccagaaggttgatgagataaagaa 629 Query: 693 ggaggtggatgc 704 ||| ||||||| Sbjct: 630 agagttggatgc 641
>dbj|AK242262.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J075184M03, full insert sequence Length = 3272 Score = 63.9 bits (32), Expect = 1e-06 Identities = 62/72 (86%) Strand = Plus / Minus Query: 633 gatagagaaagatgcagaggaagccgaggccctaatccacaaggttgaagagatagaaaa 692 ||||||| | ||||| ||| ||||||||||||||||||| |||||||| |||||| | || Sbjct: 2819 gatagaggatgatgccgagaaagccgaggccctaatccagaaggttgatgagataaagaa 2760 Query: 693 ggaggtggatgc 704 ||| ||||||| Sbjct: 2759 agagttggatgc 2748
>ref|NM_001059476.1| Oryza sativa (japonica cultivar-group) Os04g0450600 (Os04g0450600) mRNA, complete cds Length = 654 Score = 63.9 bits (32), Expect = 1e-06 Identities = 62/72 (86%) Strand = Plus / Plus Query: 633 gatagagaaagatgcagaggaagccgaggccctaatccacaaggttgaagagatagaaaa 692 ||||||| | ||||| ||| ||||||||||||||||||| |||||||| |||||| | || Sbjct: 537 gatagaggatgatgccgagaaagccgaggccctaatccagaaggttgatgagataaagaa 596 Query: 693 ggaggtggatgc 704 ||| ||||||| Sbjct: 597 agagttggatgc 608
>emb|CT837754.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA120A23, full insert sequence Length = 2014 Score = 52.0 bits (26), Expect = 0.004 Identities = 41/46 (89%) Strand = Plus / Plus Query: 633 gatagagaaagatgcagaggaagccgaggccctaatccacaaggtt 678 ||||||| | ||||| ||| ||||||||||||||||||| |||||| Sbjct: 555 gatagaggatgatgccgagaaagccgaggccctaatccagaaggtt 600
>emb|CR855170.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0818E04, complete sequence Length = 146307 Score = 52.0 bits (26), Expect = 0.004 Identities = 41/46 (89%) Strand = Plus / Plus Query: 633 gatagagaaagatgcagaggaagccgaggccctaatccacaaggtt 678 ||||||| | ||||| ||| ||||||||||||||||||| |||||| Sbjct: 101282 gatagaggatgatgccgagaaagccgaggccctaatccagaaggtt 101327
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 52.0 bits (26), Expect = 0.004 Identities = 41/46 (89%) Strand = Plus / Plus Query: 633 gatagagaaagatgcagaggaagccgaggccctaatccacaaggtt 678 ||||||| | ||||| ||| ||||||||||||||||||| |||||| Sbjct: 22423655 gatagaggatgatgccgagaaagccgaggccctaatccagaaggtt 22423700
>emb|AL606615.4|OSJN00048 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0086B14, complete sequence Length = 175698 Score = 52.0 bits (26), Expect = 0.004 Identities = 41/46 (89%) Strand = Plus / Plus Query: 633 gatagagaaagatgcagaggaagccgaggccctaatccacaaggtt 678 ||||||| | ||||| ||| ||||||||||||||||||| |||||| Sbjct: 27410 gatagaggatgatgccgagaaagccgaggccctaatccagaaggtt 27455
>emb|CT028522.1| Poplar cDNA sequences Length = 597 Score = 46.1 bits (23), Expect = 0.25 Identities = 23/23 (100%) Strand = Plus / Plus Query: 630 agagatagagaaagatgcagagg 652 ||||||||||||||||||||||| Sbjct: 172 agagatagagaaagatgcagagg 194
>emb|CT028521.1| Poplar cDNA sequences Length = 595 Score = 46.1 bits (23), Expect = 0.25 Identities = 23/23 (100%) Strand = Plus / Minus Query: 630 agagatagagaaagatgcagagg 652 ||||||||||||||||||||||| Sbjct: 426 agagatagagaaagatgcagagg 404
>emb|BX682558.6| Zebrafish DNA sequence from clone DKEY-225F5 in linkage group 3, complete sequence Length = 146807 Score = 46.1 bits (23), Expect = 0.25 Identities = 26/27 (96%) Strand = Plus / Minus Query: 439 gtctttggagcagtatctttttatgga 465 |||||||| |||||||||||||||||| Sbjct: 119318 gtctttggggcagtatctttttatgga 119292
>gb|AC158915.4| Mus musculus chromosome 8, clone RP23-146N20, complete sequence Length = 207367 Score = 44.1 bits (22), Expect = 0.99 Identities = 22/22 (100%) Strand = Plus / Minus Query: 790 agtagaagttaacaaataaata 811 |||||||||||||||||||||| Sbjct: 198669 agtagaagttaacaaataaata 198648
>gb|AC121140.7| Mus musculus chromosome 8, clone RP23-429G12, complete sequence Length = 201440 Score = 44.1 bits (22), Expect = 0.99 Identities = 22/22 (100%) Strand = Plus / Minus Query: 790 agtagaagttaacaaataaata 811 |||||||||||||||||||||| Sbjct: 151735 agtagaagttaacaaataaata 151714
>gb|AC121505.14| Mus musculus chromosome 8, clone RP24-144M14, complete sequence Length = 163953 Score = 44.1 bits (22), Expect = 0.99 Identities = 22/22 (100%) Strand = Plus / Minus Query: 790 agtagaagttaacaaataaata 811 |||||||||||||||||||||| Sbjct: 3100 agtagaagttaacaaataaata 3079
>gb|AC188790.2| Callithrix jacchus BAC clone CH259-46H12 from chromosome unknown, complete sequence Length = 185070 Score = 42.1 bits (21), Expect = 3.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 725 ggaagggcatgaagaaacgatagca 749 ||||||||||||||||| ||||||| Sbjct: 70983 ggaagggcatgaagaaatgatagca 71007
>gb|AC107757.15| Mus musculus chromosome 15, clone RP23-207L14, complete sequence Length = 208483 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 987 acaaatagagatttattttgt 1007 ||||||||||||||||||||| Sbjct: 95241 acaaatagagatttattttgt 95221
>gb|AC147678.5| Canis Familiaris, clone XX-25C7, complete sequence Length = 171041 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 480 ggaagagaatgtggagaagac 500 ||||||||||||||||||||| Sbjct: 50834 ggaagagaatgtggagaagac 50854
>gb|AC108409.8| Mus musculus chromosome 19, clone RP23-84G7, complete sequence Length = 270854 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 476 caatggaagagaatgtggaga 496 ||||||||||||||||||||| Sbjct: 81139 caatggaagagaatgtggaga 81159
>gb|AC164163.2| Mus musculus BAC clone RP23-243L21 from chromosome 16, complete sequence Length = 178656 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 366 ggaccctgggtaattaccagg 386 ||||||||||||||||||||| Sbjct: 31014 ggaccctgggtaattaccagg 31034
>dbj|AK049498.1| Mus musculus 7 days embryo whole body cDNA, RIKEN full-length enriched library, clone:C430017K04 product:unclassifiable, full insert sequence Length = 4142 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 476 caatggaagagaatgtggaga 496 ||||||||||||||||||||| Sbjct: 2983 caatggaagagaatgtggaga 2963
>emb|AL034373.13|HS424L16 Human DNA sequence from clone RP3-424L16 on chromosome 6q12-13 Contains part of the RAB3IP2 gene for RAB3 interacting protein 2, complete sequence Length = 107484 Score = 42.1 bits (21), Expect = 3.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 973 gtagttatatatgtacaaatagagattta 1001 |||||||||||| |||||||| ||||||| Sbjct: 66782 gtagttatatatttacaaatatagattta 66810
>gb|AC126785.11| Medicago truncatula clone mth2-9i24, complete sequence Length = 132702 Score = 42.1 bits (21), Expect = 3.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 785 ctaatagtagaagttaacaaataaa 809 |||||||||||||||||| |||||| Sbjct: 40920 ctaatagtagaagttaacgaataaa 40944
>emb|X61240.1|HIVTRENGE Huma Immunodeficiency Virus Isolate D205, complete genome Length = 10269 Score = 42.1 bits (21), Expect = 3.9 Identities = 30/33 (90%) Strand = Plus / Plus Query: 624 cgcagaagagatagagaaagatgcagaggaagc 656 ||||||||||| || ||||||| |||||||||| Sbjct: 1345 cgcagaagagaaagtgaaagatacagaggaagc 1377
>emb|AL138641.2|ATT22K7 Arabidopsis thaliana DNA chromosome 3, BAC clone T22K7 Length = 82316 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 773 aagtaacagttactaatagta 793 ||||||||||||||||||||| Sbjct: 13743 aagtaacagttactaatagta 13723
>emb|BX842704.15| Zebrafish DNA sequence from clone DKEY-177D20 in linkage group 20 Contains four CpG islands, complete sequence Length = 154958 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 681 agagatagaaaaggaggtgga 701 ||||||||||||||||||||| Sbjct: 50183 agagatagaaaaggaggtgga 50203
>gb|AC171199.1| Mus musculus BAC clone RP24-469I17 from chromosome 16, complete sequence Length = 146976 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 366 ggaccctgggtaattaccagg 386 ||||||||||||||||||||| Sbjct: 124399 ggaccctgggtaattaccagg 124419 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 198,604,513 Number of extensions: 10349474 Number of successful extensions: 220517 Number of sequences better than 10.0: 25 Number of HSP's gapped: 220517 Number of HSP's successfully gapped: 25 Length of query: 1032 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1009 Effective length of database: 18,503,978,556 Effective search space: 18670514363004 Effective search space used: 18670514363004 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)