ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf3e02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|CT835041.1| Oryza sativa (indica cultivar-group) cDNA clone:... 64 1e-06
2dbj|AK242262.1| Oryza sativa (japonica cultivar-group) cDNA, clo... 64 1e-06
3ref|NM_001059476.1| Oryza sativa (japonica cultivar-group) Os04g... 64 1e-06
4emb|CT837754.1| Oryza sativa (indica cultivar-group) cDNA clone:... 52 0.004
5emb|CR855170.1| Oryza sativa genomic DNA, chromosome 4, BAC clon... 52 0.004
6dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.004
7emb|AL606615.4|OSJN00048 Oryza sativa genomic DNA, chromosome 4,... 52 0.004
8emb|CT028522.1| Poplar cDNA sequences 46 0.25
9emb|CT028521.1| Poplar cDNA sequences 46 0.25
10emb|BX682558.6| Zebrafish DNA sequence from clone DKEY-225F5 in ... 46 0.25
11gb|AC158915.4| Mus musculus chromosome 8, clone RP23-146N20, com... 44 0.99
12gb|AC121140.7| Mus musculus chromosome 8, clone RP23-429G12, com... 44 0.99
13gb|AC121505.14| Mus musculus chromosome 8, clone RP24-144M14, co... 44 0.99
14gb|AC188790.2| Callithrix jacchus BAC clone CH259-46H12 from chr... 42 3.9
15gb|AC107757.15| Mus musculus chromosome 15, clone RP23-207L14, c... 42 3.9
16gb|AC147678.5| Canis Familiaris, clone XX-25C7, complete sequence 42 3.9
17gb|AC108409.8| Mus musculus chromosome 19, clone RP23-84G7, comp... 42 3.9
18gb|AC164163.2| Mus musculus BAC clone RP23-243L21 from chromosom... 42 3.9
19dbj|AK049498.1| Mus musculus 7 days embryo whole body cDNA, RIKE... 42 3.9
20emb|AL034373.13|HS424L16 Human DNA sequence from clone RP3-424L1... 42 3.9
21gb|AC126785.11| Medicago truncatula clone mth2-9i24, complete se... 42 3.9
22emb|X61240.1|HIVTRENGE Huma Immunodeficiency Virus Isolate D205,... 42 3.9
23emb|AL138641.2|ATT22K7 Arabidopsis thaliana DNA chromosome 3, BA... 42 3.9
24emb|BX842704.15| Zebrafish DNA sequence from clone DKEY-177D20 i... 42 3.9
25gb|AC171199.1| Mus musculus BAC clone RP24-469I17 from chromosom... 42 3.9

>emb|CT835041.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA121F24, full
           insert sequence
          Length = 965
 Score = 63.9 bits (32), Expect = 1e-06
 Identities = 62/72 (86%)
 Strand = Plus / Plus

                                                                       
Query: 633 gatagagaaagatgcagaggaagccgaggccctaatccacaaggttgaagagatagaaaa 692
           ||||||| | ||||| ||| ||||||||||||||||||| |||||||| |||||| | ||
Sbjct: 570 gatagaggatgatgccgagaaagccgaggccctaatccagaaggttgatgagataaagaa 629

                       
Query: 693 ggaggtggatgc 704
            ||| |||||||
Sbjct: 630 agagttggatgc 641



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>dbj|AK242262.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J075184M03, full
            insert sequence
          Length = 3272

 Score = 63.9 bits (32), Expect = 1e-06
 Identities = 62/72 (86%)
 Strand = Plus / Minus

                                                                        
Query: 633  gatagagaaagatgcagaggaagccgaggccctaatccacaaggttgaagagatagaaaa 692
            ||||||| | ||||| ||| ||||||||||||||||||| |||||||| |||||| | ||
Sbjct: 2819 gatagaggatgatgccgagaaagccgaggccctaatccagaaggttgatgagataaagaa 2760

                        
Query: 693  ggaggtggatgc 704
             ||| |||||||
Sbjct: 2759 agagttggatgc 2748



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>ref|NM_001059476.1| Oryza sativa (japonica cultivar-group) Os04g0450600 (Os04g0450600)
           mRNA, complete cds
          Length = 654

 Score = 63.9 bits (32), Expect = 1e-06
 Identities = 62/72 (86%)
 Strand = Plus / Plus

                                                                       
Query: 633 gatagagaaagatgcagaggaagccgaggccctaatccacaaggttgaagagatagaaaa 692
           ||||||| | ||||| ||| ||||||||||||||||||| |||||||| |||||| | ||
Sbjct: 537 gatagaggatgatgccgagaaagccgaggccctaatccagaaggttgatgagataaagaa 596

                       
Query: 693 ggaggtggatgc 704
            ||| |||||||
Sbjct: 597 agagttggatgc 608



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>emb|CT837754.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA120A23, full
           insert sequence
          Length = 2014

 Score = 52.0 bits (26), Expect = 0.004
 Identities = 41/46 (89%)
 Strand = Plus / Plus

                                                         
Query: 633 gatagagaaagatgcagaggaagccgaggccctaatccacaaggtt 678
           ||||||| | ||||| ||| ||||||||||||||||||| ||||||
Sbjct: 555 gatagaggatgatgccgagaaagccgaggccctaatccagaaggtt 600



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>emb|CR855170.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0818E04, complete
              sequence
          Length = 146307

 Score = 52.0 bits (26), Expect = 0.004
 Identities = 41/46 (89%)
 Strand = Plus / Plus

                                                            
Query: 633    gatagagaaagatgcagaggaagccgaggccctaatccacaaggtt 678
              ||||||| | ||||| ||| ||||||||||||||||||| ||||||
Sbjct: 101282 gatagaggatgatgccgagaaagccgaggccctaatccagaaggtt 101327



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4
          Length = 35498469

 Score = 52.0 bits (26), Expect = 0.004
 Identities = 41/46 (89%)
 Strand = Plus / Plus

                                                              
Query: 633      gatagagaaagatgcagaggaagccgaggccctaatccacaaggtt 678
                ||||||| | ||||| ||| ||||||||||||||||||| ||||||
Sbjct: 22423655 gatagaggatgatgccgagaaagccgaggccctaatccagaaggtt 22423700



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>emb|AL606615.4|OSJN00048 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0086B14,
             complete sequence
          Length = 175698

 Score = 52.0 bits (26), Expect = 0.004
 Identities = 41/46 (89%)
 Strand = Plus / Plus

                                                           
Query: 633   gatagagaaagatgcagaggaagccgaggccctaatccacaaggtt 678
             ||||||| | ||||| ||| ||||||||||||||||||| ||||||
Sbjct: 27410 gatagaggatgatgccgagaaagccgaggccctaatccagaaggtt 27455



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>emb|CT028522.1| Poplar cDNA sequences
          Length = 597

 Score = 46.1 bits (23), Expect = 0.25
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 630 agagatagagaaagatgcagagg 652
           |||||||||||||||||||||||
Sbjct: 172 agagatagagaaagatgcagagg 194



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>emb|CT028521.1| Poplar cDNA sequences
          Length = 595

 Score = 46.1 bits (23), Expect = 0.25
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 630 agagatagagaaagatgcagagg 652
           |||||||||||||||||||||||
Sbjct: 426 agagatagagaaagatgcagagg 404



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>emb|BX682558.6| Zebrafish DNA sequence from clone DKEY-225F5 in linkage group 3, complete
              sequence
          Length = 146807

 Score = 46.1 bits (23), Expect = 0.25
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 439    gtctttggagcagtatctttttatgga 465
              |||||||| ||||||||||||||||||
Sbjct: 119318 gtctttggggcagtatctttttatgga 119292



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>gb|AC158915.4| Mus musculus chromosome 8, clone RP23-146N20, complete sequence
          Length = 207367

 Score = 44.1 bits (22), Expect = 0.99
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 790    agtagaagttaacaaataaata 811
              ||||||||||||||||||||||
Sbjct: 198669 agtagaagttaacaaataaata 198648



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>gb|AC121140.7| Mus musculus chromosome 8, clone RP23-429G12, complete sequence
          Length = 201440

 Score = 44.1 bits (22), Expect = 0.99
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 790    agtagaagttaacaaataaata 811
              ||||||||||||||||||||||
Sbjct: 151735 agtagaagttaacaaataaata 151714



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>gb|AC121505.14| Mus musculus chromosome 8, clone RP24-144M14, complete sequence
          Length = 163953

 Score = 44.1 bits (22), Expect = 0.99
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 790  agtagaagttaacaaataaata 811
            ||||||||||||||||||||||
Sbjct: 3100 agtagaagttaacaaataaata 3079



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>gb|AC188790.2| Callithrix jacchus BAC clone CH259-46H12 from chromosome unknown,
             complete sequence
          Length = 185070

 Score = 42.1 bits (21), Expect = 3.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 725   ggaagggcatgaagaaacgatagca 749
             ||||||||||||||||| |||||||
Sbjct: 70983 ggaagggcatgaagaaatgatagca 71007



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>gb|AC107757.15| Mus musculus chromosome 15, clone RP23-207L14, complete sequence
          Length = 208483

 Score = 42.1 bits (21), Expect = 3.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 987   acaaatagagatttattttgt 1007
             |||||||||||||||||||||
Sbjct: 95241 acaaatagagatttattttgt 95221



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>gb|AC147678.5| Canis Familiaris, clone XX-25C7, complete sequence
          Length = 171041

 Score = 42.1 bits (21), Expect = 3.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 480   ggaagagaatgtggagaagac 500
             |||||||||||||||||||||
Sbjct: 50834 ggaagagaatgtggagaagac 50854



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>gb|AC108409.8| Mus musculus chromosome 19, clone RP23-84G7, complete sequence
          Length = 270854

 Score = 42.1 bits (21), Expect = 3.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 476   caatggaagagaatgtggaga 496
             |||||||||||||||||||||
Sbjct: 81139 caatggaagagaatgtggaga 81159



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>gb|AC164163.2| Mus musculus BAC clone RP23-243L21 from chromosome 16, complete
             sequence
          Length = 178656

 Score = 42.1 bits (21), Expect = 3.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 366   ggaccctgggtaattaccagg 386
             |||||||||||||||||||||
Sbjct: 31014 ggaccctgggtaattaccagg 31034



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>dbj|AK049498.1| Mus musculus 7 days embryo whole body cDNA, RIKEN full-length
            enriched library, clone:C430017K04
            product:unclassifiable, full insert sequence
          Length = 4142

 Score = 42.1 bits (21), Expect = 3.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 476  caatggaagagaatgtggaga 496
            |||||||||||||||||||||
Sbjct: 2983 caatggaagagaatgtggaga 2963



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>emb|AL034373.13|HS424L16 Human DNA sequence from clone RP3-424L16 on chromosome 6q12-13 Contains
             part of the RAB3IP2 gene for RAB3 interacting protein 2,
             complete sequence
          Length = 107484

 Score = 42.1 bits (21), Expect = 3.9
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 973   gtagttatatatgtacaaatagagattta 1001
             |||||||||||| |||||||| |||||||
Sbjct: 66782 gtagttatatatttacaaatatagattta 66810



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>gb|AC126785.11| Medicago truncatula clone mth2-9i24, complete sequence
          Length = 132702

 Score = 42.1 bits (21), Expect = 3.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 785   ctaatagtagaagttaacaaataaa 809
             |||||||||||||||||| ||||||
Sbjct: 40920 ctaatagtagaagttaacgaataaa 40944



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>emb|X61240.1|HIVTRENGE Huma Immunodeficiency Virus Isolate D205, complete genome
          Length = 10269

 Score = 42.1 bits (21), Expect = 3.9
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                             
Query: 624  cgcagaagagatagagaaagatgcagaggaagc 656
            ||||||||||| || ||||||| ||||||||||
Sbjct: 1345 cgcagaagagaaagtgaaagatacagaggaagc 1377



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>emb|AL138641.2|ATT22K7 Arabidopsis thaliana DNA chromosome 3, BAC clone T22K7
          Length = 82316

 Score = 42.1 bits (21), Expect = 3.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 773   aagtaacagttactaatagta 793
             |||||||||||||||||||||
Sbjct: 13743 aagtaacagttactaatagta 13723



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>emb|BX842704.15| Zebrafish DNA sequence from clone DKEY-177D20 in linkage group 20
             Contains four CpG islands, complete sequence
          Length = 154958

 Score = 42.1 bits (21), Expect = 3.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 681   agagatagaaaaggaggtgga 701
             |||||||||||||||||||||
Sbjct: 50183 agagatagaaaaggaggtgga 50203



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>gb|AC171199.1| Mus musculus BAC clone RP24-469I17 from chromosome 16, complete sequence
          Length = 146976

 Score = 42.1 bits (21), Expect = 3.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 366    ggaccctgggtaattaccagg 386
              |||||||||||||||||||||
Sbjct: 124399 ggaccctgggtaattaccagg 124419


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 198,604,513
Number of extensions: 10349474
Number of successful extensions: 220517
Number of sequences better than 10.0: 25
Number of HSP's gapped: 220517
Number of HSP's successfully gapped: 25
Length of query: 1032
Length of database: 18,610,659,111
Length adjustment: 23
Effective length of query: 1009
Effective length of database: 18,503,978,556
Effective search space: 18670514363004
Effective search space used: 18670514363004
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
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