ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf3d24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL772362.8| Zebrafish DNA sequence from clone CH211-173K16 i... 44 0.46
2emb|CR749170.6| Zebrafish DNA sequence from clone DKEY-190I13 in... 42 1.8
3dbj|AP006628.1| Onion yellows phytoplasma OY-M DNA, complete genome 42 1.8
4gb|AE014296.4| Drosophila melanogaster chromosome 3L, complete s... 40 7.3
5emb|CU024870.3| Zebrafish DNA sequence from clone CH211-193F12, ... 40 7.3
6gb|AC127546.4| Mus musculus BAC clone RP24-485N8 from chromosome... 40 7.3
7gb|AC100043.9| Mus musculus chromosome 3, clone RP23-32D13, comp... 40 7.3
8gb|AC110566.17| Mus musculus chromosome 5, clone RP23-300A10, co... 40 7.3
9gb|L14710.1| Caenorhabditis elegans cosmid K02D10, complete sequ... 40 7.3
10gb|AC122910.5| Mus musculus BAC clone RP23-54P3 from chromosome ... 40 7.3
11gb|AC004128.1| Homo sapiens PAC clone RP5-850G1 from 7, complete... 40 7.3
12gb|AC010045.5| Drosophila melanogaster 3L BAC RP98-17C17 (Roswel... 40 7.3
13gb|AY128534.1| Homo sapiens cyclin-dependent kinase 6 (CDK6) gen... 40 7.3
14gb|AC010059.6| Drosophila melanogaster 3L BAC RP98-17A14 (Roswel... 40 7.3
15ref|NM_066540.3| Caenorhabditis elegans K02D10.4 (K02D10.4) mRNA... 40 7.3
16emb|CR293501.10| Zebrafish DNA sequence from clone DKEYP-86F7 in... 40 7.3
17emb|AL034559.4|PFMAL3P7 Plasmodium falciparum MAL3P7, complete s... 40 7.3
18emb|CR925780.8| Zebrafish DNA sequence from clone CH211-112B19 i... 40 7.3
19emb|BX544877.19| Zebrafish DNA sequence from clone CH211-202C4 i... 40 7.3
20emb|BX571708.4| Zebrafish DNA sequence from clone DKEYP-74B2, co... 40 7.3
21gb|AC006349.3|AC006349 Homo sapiens PAC clone RP5-892G5 from 14q... 40 7.3
22emb|BX005331.8| Zebrafish DNA sequence from clone CH211-66K16 in... 40 7.3
23emb|BX284636.7| Zebrafish DNA sequence from clone DKEYP-35F9 in ... 40 7.3
24ref|XM_672007.1| Plasmodium berghei strain ANKA Pb-fam-4 protein... 40 7.3

>emb|AL772362.8| Zebrafish DNA sequence from clone CH211-173K16 in linkage group 13,
             complete sequence
          Length = 165993
 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 438   taatttgttccttcgttttatt 459
             ||||||||||||||||||||||
Sbjct: 79342 taatttgttccttcgttttatt 79321



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>emb|CR749170.6| Zebrafish DNA sequence from clone DKEY-190I13 in linkage group 21,
             complete sequence
          Length = 140121

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 453   ttttattattatatttccctt 473
             |||||||||||||||||||||
Sbjct: 14447 ttttattattatatttccctt 14427



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>dbj|AP006628.1| Onion yellows phytoplasma OY-M DNA, complete genome
          Length = 860631

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 449    ttcgttttattattatatttc 469
              |||||||||||||||||||||
Sbjct: 508952 ttcgttttattattatatttc 508972



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>gb|AE014296.4| Drosophila melanogaster chromosome 3L, complete sequence
          Length = 24543557

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 2        atctgtacttgctctattctccac 25
                |||||||||| |||||||||||||
Sbjct: 17951667 atctgtacttcctctattctccac 17951690



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>emb|CU024870.3| Zebrafish DNA sequence from clone CH211-193F12, complete sequence
          Length = 116393

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 432   tatatgtaatttgttccttc 451
             ||||||||||||||||||||
Sbjct: 99263 tatatgtaatttgttccttc 99244



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>gb|AC127546.4| Mus musculus BAC clone RP24-485N8 from chromosome 7, complete sequence
          Length = 151861

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 55    tctctcaaggtggccgccgt 74
             ||||||||||||||||||||
Sbjct: 77321 tctctcaaggtggccgccgt 77302



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>gb|AC100043.9| Mus musculus chromosome 3, clone RP23-32D13, complete sequence
          Length = 234931

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 113    aaccagtggcagccacagaatgcgaaga 140
              ||||||||||||| ||||||||| ||||
Sbjct: 146290 aaccagtggcagctacagaatgctaaga 146263



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>gb|AC110566.17| Mus musculus chromosome 5, clone RP23-300A10, complete sequence
          Length = 175471

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 452   gttttattattatatttccc 471
             ||||||||||||||||||||
Sbjct: 78525 gttttattattatatttccc 78506



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>gb|L14710.1| Caenorhabditis elegans cosmid K02D10, complete sequence
          Length = 18683

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 39    ttcatcaatggcttcatctc 58
             ||||||||||||||||||||
Sbjct: 10072 ttcatcaatggcttcatctc 10053



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>gb|AC122910.5| Mus musculus BAC clone RP23-54P3 from chromosome 6, complete sequence
          Length = 221390

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 450    tcgttttattattatatttc 469
              ||||||||||||||||||||
Sbjct: 135390 tcgttttattattatatttc 135371



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>gb|AC004128.1| Homo sapiens PAC clone RP5-850G1 from 7, complete sequence
          Length = 93904

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 430   catatatgtaatttgttcct 449
             ||||||||||||||||||||
Sbjct: 33379 catatatgtaatttgttcct 33398



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>gb|AC010045.5| Drosophila melanogaster 3L BAC RP98-17C17 (Roswell Park Cancer
             Institute Drosophila BAC Library) complete sequence
          Length = 179649

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 2     atctgtacttgctctattctccac 25
             |||||||||| |||||||||||||
Sbjct: 23519 atctgtacttcctctattctccac 23496



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>gb|AY128534.1| Homo sapiens cyclin-dependent kinase 6 (CDK6) gene, complete cds
          Length = 220803

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 430    catatatgtaatttgttcct 449
              ||||||||||||||||||||
Sbjct: 112422 catatatgtaatttgttcct 112403



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>gb|AC010059.6| Drosophila melanogaster 3L BAC RP98-17A14 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 171678

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 2      atctgtacttgctctattctccac 25
              |||||||||| |||||||||||||
Sbjct: 141796 atctgtacttcctctattctccac 141773



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>ref|NM_066540.3| Caenorhabditis elegans K02D10.4 (K02D10.4) mRNA, complete cds
          Length = 1497

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 39  ttcatcaatggcttcatctc 58
           ||||||||||||||||||||
Sbjct: 576 ttcatcaatggcttcatctc 595



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>emb|CR293501.10| Zebrafish DNA sequence from clone DKEYP-86F7 in linkage group 23,
             complete sequence
          Length = 203705

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 438   taatttgttccttcgtttta 457
             ||||||||||||||||||||
Sbjct: 19078 taatttgttccttcgtttta 19059



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>emb|AL034559.4|PFMAL3P7 Plasmodium falciparum MAL3P7, complete sequence
          Length = 253305

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 446    tccttcgttttattattata 465
              ||||||||||||||||||||
Sbjct: 151293 tccttcgttttattattata 151312



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>emb|CR925780.8| Zebrafish DNA sequence from clone CH211-112B19 in linkage group 5,
              complete sequence
          Length = 166407

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 432    tatatgtaatttgttccttc 451
              ||||||||||||||||||||
Sbjct: 144271 tatatgtaatttgttccttc 144290



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>emb|BX544877.19| Zebrafish DNA sequence from clone CH211-202C4 in linkage group 25,
            complete sequence
          Length = 144487

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 432  tatatgtaatttgttccttc 451
            ||||||||||||||||||||
Sbjct: 6448 tatatgtaatttgttccttc 6429



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>emb|BX571708.4| Zebrafish DNA sequence from clone DKEYP-74B2, complete sequence
          Length = 193197

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 432    tatatgtaatttgttccttc 451
              ||||||||||||||||||||
Sbjct: 155324 tatatgtaatttgttccttc 155343



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>gb|AC006349.3|AC006349 Homo sapiens PAC clone RP5-892G5 from 14q24.3, complete sequence
          Length = 111937

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 454   tttattattatatttccctt 473
             ||||||||||||||||||||
Sbjct: 99774 tttattattatatttccctt 99755



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>emb|BX005331.8| Zebrafish DNA sequence from clone CH211-66K16 in linkage group 2,
             complete sequence
          Length = 186419

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 432   tatatgtaatttgttccttc 451
             ||||||||||||||||||||
Sbjct: 98002 tatatgtaatttgttccttc 97983



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>emb|BX284636.7| Zebrafish DNA sequence from clone DKEYP-35F9 in linkage group 14,
              complete sequence
          Length = 171311

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 438    taatttgttccttcgtttta 457
              ||||||||||||||||||||
Sbjct: 147277 taatttgttccttcgtttta 147258



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>ref|XM_672007.1| Plasmodium berghei strain ANKA Pb-fam-4 protein (PB000480.03.0)
           partial mRNA
          Length = 1173

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 445 ttccttcgttttattattat 464
           ||||||||||||||||||||
Sbjct: 825 ttccttcgttttattattat 806


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 73,382,399
Number of extensions: 4034750
Number of successful extensions: 305895
Number of sequences better than 10.0: 24
Number of HSP's gapped: 305895
Number of HSP's successfully gapped: 24
Length of query: 497
Length of database: 18,610,659,111
Length adjustment: 22
Effective length of query: 475
Effective length of database: 18,508,616,841
Effective search space: 8791592999475
Effective search space used: 8791592999475
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 13 (26.3 bits)
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