ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf5l02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Q8S403:PHO1_ARATH Putative phosphate transporter 1 - Arabidopsis... 38 0.075
2Q5PP38:GAT29_ARATH GATA transcription factor 29 - Arabidopsis th... 32 5.4
3P08099:OPS2_DROME Opsin Rh2 - Drosophila melanogaster (Fruit fly) 31 7.0
4O95390:GDF11_HUMAN Growth/differentiation factor 11 precursor - ... 31 7.0

>Q8S403:PHO1_ARATH Putative phosphate transporter 1 - Arabidopsis thaliana (Mouse-ear|
           cress)
          Length = 782
 Score = 37.7 bits (86), Expect = 0.075
 Identities = 20/78 (25%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
 Frame = +2

Query: 503 FLYEVFLYYNPLFLVALMIWLWGVNLWVFAQSSVNYVKVFDLA-QTHLSHREIWRCATWL 679
           +L  V+  ++   L++L ++++G NL+++  + +NY  +F+ A  T L +R+ +   T  
Sbjct: 421 YLETVYPVFSVFALLSLHMFMYGCNLYMWKNTRINYTFIFEFAPNTALRYRDAFLMGTTF 480

Query: 680 TLIVPTSMTAYLYLYSHG 733
              V  +M  +L L + G
Sbjct: 481 MTSVVAAMVIHLILRASG 498



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>Q5PP38:GAT29_ARATH GATA transcription factor 29 - Arabidopsis thaliana (Mouse-ear|
           cress)
          Length = 470

 Score = 31.6 bits (70), Expect = 5.4
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
 Frame = -2

Query: 611 HNSLMIVQRPTDSL----PITKS*VPQGREGYSIRKPHTEINLEDQHSSS*P 468
           +NSL+ ++RP +SL      T+  +   +E   IR  HTE NLE+  SS  P
Sbjct: 379 NNSLVTIERPCESLNQNFSETRGVMRSPKEVMKIRSKHTEENLENSVSSFKP 430



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>P08099:OPS2_DROME Opsin Rh2 - Drosophila melanogaster (Fruit fly)|
          Length = 381

 Score = 31.2 bits (69), Expect = 7.0
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +2

Query: 440 LCCCKIGWDSVMRMSADLRDLFLYEVFLYYNPLFLVALMIW 562
           L  C I  D + RM      L  Y +F+YY PLFL+    W
Sbjct: 204 LTACSI--DYMTRMWNPRSYLITYSLFVYYTPLFLICYSYW 242



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>O95390:GDF11_HUMAN Growth/differentiation factor 11 precursor - Homo sapiens (Human)|
          Length = 407

 Score = 31.2 bits (69), Expect = 7.0
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
 Frame = +2

Query: 245 GFSPVQVEIR--AVASRVPAEAQAPRLRAQRPGIGGEMKGASVPAVVGMPS--PLFLWR 409
           GF  + +E+R    A+  PA A A    A   G+GGE      P+V   P   P+ +WR
Sbjct: 10  GFLLLALELRPRGEAAEGPAAAAAAAAAAAAAGVGGERSSRPAPSVAPEPDGCPVCVWR 68


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 181,805,983
Number of extensions: 4085403
Number of successful extensions: 12214
Number of sequences better than 10.0: 4
Number of HSP's gapped: 12177
Number of HSP's successfully gapped: 4
Length of query: 338
Length of database: 100,686,439
Length adjustment: 114
Effective length of query: 224
Effective length of database: 69,416,809
Effective search space: 15549365216
Effective search space used: 15549365216
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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