| Clone Name | FLbaf5k23 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY106168.1| Zea mays PCO134793 mRNA sequence Length = 761 Score = 337 bits (170), Expect = 4e-89 Identities = 300/342 (87%), Gaps = 1/342 (0%) Strand = Plus / Plus Query: 53 gagatggagaacgcggtggtcctccgggagtggttcgaccgcgtcgacgccgccggcacc 112 |||||||||||||||||||| |||||||||||||| |||||||||||||||| | ||||| Sbjct: 132 gagatggagaacgcggtggtgctccgggagtggtttgaccgcgtcgacgccggccgcacc 191 Query: 113 ggcaacgtcacggctcctcagctccagagcgcgctggccgtgggcaacctcgacttcccg 172 |||||| |||| ||| | ||||||||| ||||||| || || ||||||||| ||||||| Sbjct: 192 ggcaacatcaccgctgcccagctccagggcgcgctcgctgtcggcaacctcaacttcccc 251 Query: 173 ctctccgtcgtgcagcagatgatcaggatgtacgacttcgatcggaacggcaccatgagc 232 |||||||||||||||||||||| |||||||| |||||||||||||| |||||||||| | Sbjct: 252 atctccgtcgtgcagcagatgattaggatgtatgacttcgatcggaatggcaccatgaac 311 Query: 233 ttcgaagagttcttggctcttaacaagttccttcacaaggtgcagggtgtcttct-cacc 291 ||||||||||| ||||||||||||| ||||| || |||||||| ||| || | |||| Sbjct: 312 ttcgaagagtttctggctcttaacaaattcctacagaaggtgcaaaatgtgttttccacc 371 Query: 292 ctagaaaggggtcgtggatttctcagtcttgaggatgtgtatgaggcattaatcaaactc 351 || || ||||||||||||||||| ||||||||||| ||||| |||||||||||||||| Sbjct: 372 ctggataggggtcgtggatttctaagtcttgaggaggtgtaccaggcattaatcaaactt 431 Query: 352 gatttctctttggattcacctgccttctacactgtctgtgag 393 | |||||| ||||||||||| |||||||| ||||| |||||| Sbjct: 432 ggtttctcgttggattcaccagccttctatactgtttgtgag 473
>dbj|AP004945.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT43B20, TM0117b, complete sequence Length = 114918 Score = 97.6 bits (49), Expect = 6e-17 Identities = 79/89 (88%) Strand = Plus / Plus Query: 146 ctggccgtgggcaacctcgacttcccgctctccgtcgtgcagcagatgatcaggatgtac 205 |||||||||||||||||||| || |||||||| || || ||||||||||||||||||| | Sbjct: 27186 ctggccgtgggcaacctcgagtttccgctctcagttgttcagcagatgatcaggatgtgc 27245 Query: 206 gacttcgatcggaacggcaccatgagctt 234 ||||| ||| |||| || ||||||||||| Sbjct: 27246 gactttgataggaatggtaccatgagctt 27274
>emb|CT985397.1| partial cDNA sequence from a Lambda ZAP II normalized full-length cDNA library of differentiating xylem from Eucalyptus gunnii Length = 683 Score = 87.7 bits (44), Expect = 6e-14 Identities = 86/100 (86%) Strand = Plus / Plus Query: 174 tctccgtcgtgcagcagatgatcaggatgtacgacttcgatcggaacggcaccatgagct 233 |||| |||||| ||||||||||||||||||| || ||||| ||||||| | ||||||| Sbjct: 179 tctcggtcgtggagcagatgatcaggatgtatgatttcgacaggaacgggagtatgagct 238 Query: 234 tcgaagagttcttggctcttaacaagttccttcacaaggt 273 |||||||||| | ||||| ||||||||||||| |||||| Sbjct: 239 tcgaagagtttgttgctctcaacaagttccttctcaaggt 278
>emb|CT982465.1| partial cDNA sequence from a Lambda ZAP II normalized full-length cDNA library of differentiating xylem from Eucalyptus gunnii Length = 801 Score = 87.7 bits (44), Expect = 6e-14 Identities = 86/100 (86%) Strand = Plus / Plus Query: 174 tctccgtcgtgcagcagatgatcaggatgtacgacttcgatcggaacggcaccatgagct 233 |||| |||||| ||||||||||||||||||| || ||||| ||||||| | ||||||| Sbjct: 172 tctcggtcgtggagcagatgatcaggatgtatgatttcgacaggaacgggagtatgagct 231 Query: 234 tcgaagagttcttggctcttaacaagttccttcacaaggt 273 |||||||||| | ||||| ||||||||||||| |||||| Sbjct: 232 tcgaagagtttgttgctctcaacaagttccttctcaaggt 271
>gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome Length = 2256640 Score = 48.1 bits (24), Expect = 0.053 Identities = 24/24 (100%) Strand = Plus / Plus Query: 91 ccgcgtcgacgccgccggcaccgg 114 |||||||||||||||||||||||| Sbjct: 1041063 ccgcgtcgacgccgccggcaccgg 1041086
>gb|AY190297.1| Streptomyces tendae xylanase gene, complete cds Length = 1440 Score = 44.1 bits (22), Expect = 0.83 Identities = 22/22 (100%) Strand = Plus / Plus Query: 98 gacgccgccggcaccggcaacg 119 |||||||||||||||||||||| Sbjct: 1225 gacgccgccggcaccggcaacg 1246
>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome Length = 3147090 Score = 44.1 bits (22), Expect = 0.83 Identities = 22/22 (100%) Strand = Plus / Minus Query: 95 gtcgacgccgccggcaccggca 116 |||||||||||||||||||||| Sbjct: 1739076 gtcgacgccgccggcaccggca 1739055
>gb|CP000480.1| Mycobacterium smegmatis str. MC2 155, complete genome Length = 6988209 Score = 42.1 bits (21), Expect = 3.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 95 gtcgacgccgccggcaccggcaacg 119 |||||||||||||||| |||||||| Sbjct: 6151610 gtcgacgccgccggcatcggcaacg 6151586
>ref|NM_001052690.1| Oryza sativa (japonica cultivar-group) Os02g0191200 (Os02g0191200) mRNA, complete cds Length = 2061 Score = 42.1 bits (21), Expect = 3.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 551 actgcaggatatagctctattactg 575 |||||||||||||| |||||||||| Sbjct: 1624 actgcaggatatagttctattactg 1648
>dbj|AB231867.1| Nematostella vectensis gene for zinc finger protein Nv-ZicA, complete cds Length = 186420 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 594 aggaagaccaaaaagaagaaa 614 ||||||||||||||||||||| Sbjct: 56385 aggaagaccaaaaagaagaaa 56365
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 105 ccggcaccggcaacgtcacgg 125 ||||||||||||||||||||| Sbjct: 2966854 ccggcaccggcaacgtcacgg 2966834
>ref|XM_805375.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053506575.50) partial mRNA Length = 4251 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 594 aggaagaccaaaaagaagaaa 614 ||||||||||||||||||||| Sbjct: 3769 aggaagaccaaaaagaagaaa 3789
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 42.1 bits (21), Expect = 3.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 551 actgcaggatatagctctattactg 575 |||||||||||||| |||||||||| Sbjct: 5056130 actgcaggatatagttctattactg 5056154
>dbj|AP005849.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0031B09 Length = 132729 Score = 42.1 bits (21), Expect = 3.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 551 actgcaggatatagctctattactg 575 |||||||||||||| |||||||||| Sbjct: 127256 actgcaggatatagttctattactg 127280
>dbj|AP005785.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0453H10 Length = 133464 Score = 42.1 bits (21), Expect = 3.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 551 actgcaggatatagctctattactg 575 |||||||||||||| |||||||||| Sbjct: 16628 actgcaggatatagttctattactg 16652
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 87 tcgaccgcgtcgacgccgccg 107 ||||||||||||||||||||| Sbjct: 420137 tcgaccgcgtcgacgccgccg 420117 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 148,825,956 Number of extensions: 7849680 Number of successful extensions: 158852 Number of sequences better than 10.0: 16 Number of HSP's gapped: 158851 Number of HSP's successfully gapped: 16 Length of query: 873 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 851 Effective length of database: 18,508,616,841 Effective search space: 15750832931691 Effective search space used: 15750832931691 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)