ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf5k23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY106168.1| Zea mays PCO134793 mRNA sequence 337 4e-89
2dbj|AP004945.1| Lotus japonicus genomic DNA, chromosome 1, clone... 98 6e-17
3emb|CT985397.1| partial cDNA sequence from a Lambda ZAP II norma... 88 6e-14
4emb|CT982465.1| partial cDNA sequence from a Lambda ZAP II norma... 88 6e-14
5gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome 48 0.053
6gb|AY190297.1| Streptomyces tendae xylanase gene, complete cds 44 0.83
7dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete g... 44 0.83
8gb|CP000480.1| Mycobacterium smegmatis str. MC2 155, complete ge... 42 3.3
9ref|NM_001052690.1| Oryza sativa (japonica cultivar-group) Os02g... 42 3.3
10dbj|AB231867.1| Nematostella vectensis gene for zinc finger prot... 42 3.3
11gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 42 3.3
12ref|XM_805375.1| Trypanosoma cruzi strain CL Brener hypothetical... 42 3.3
13dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 3.3
14dbj|AP005849.3| Oryza sativa (japonica cultivar-group) genomic D... 42 3.3
15dbj|AP005785.3| Oryza sativa (japonica cultivar-group) genomic D... 42 3.3
16emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome 42 3.3

>gb|AY106168.1| Zea mays PCO134793 mRNA sequence
          Length = 761
 Score =  337 bits (170), Expect = 4e-89
 Identities = 300/342 (87%), Gaps = 1/342 (0%)
 Strand = Plus / Plus

                                                                       
Query: 53  gagatggagaacgcggtggtcctccgggagtggttcgaccgcgtcgacgccgccggcacc 112
           |||||||||||||||||||| |||||||||||||| |||||||||||||||| | |||||
Sbjct: 132 gagatggagaacgcggtggtgctccgggagtggtttgaccgcgtcgacgccggccgcacc 191

                                                                       
Query: 113 ggcaacgtcacggctcctcagctccagagcgcgctggccgtgggcaacctcgacttcccg 172
           |||||| |||| ||| | ||||||||| ||||||| || || ||||||||| ||||||| 
Sbjct: 192 ggcaacatcaccgctgcccagctccagggcgcgctcgctgtcggcaacctcaacttcccc 251

                                                                       
Query: 173 ctctccgtcgtgcagcagatgatcaggatgtacgacttcgatcggaacggcaccatgagc 232
            |||||||||||||||||||||| |||||||| |||||||||||||| |||||||||| |
Sbjct: 252 atctccgtcgtgcagcagatgattaggatgtatgacttcgatcggaatggcaccatgaac 311

                                                                       
Query: 233 ttcgaagagttcttggctcttaacaagttccttcacaaggtgcagggtgtcttct-cacc 291
           |||||||||||  ||||||||||||| ||||| || ||||||||   ||| || | ||||
Sbjct: 312 ttcgaagagtttctggctcttaacaaattcctacagaaggtgcaaaatgtgttttccacc 371

                                                                       
Query: 292 ctagaaaggggtcgtggatttctcagtcttgaggatgtgtatgaggcattaatcaaactc 351
           || || ||||||||||||||||| ||||||||||| |||||  |||||||||||||||| 
Sbjct: 372 ctggataggggtcgtggatttctaagtcttgaggaggtgtaccaggcattaatcaaactt 431

                                                     
Query: 352 gatttctctttggattcacctgccttctacactgtctgtgag 393
           | |||||| ||||||||||| |||||||| ||||| ||||||
Sbjct: 432 ggtttctcgttggattcaccagccttctatactgtttgtgag 473



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>dbj|AP004945.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT43B20, TM0117b,
             complete sequence
          Length = 114918

 Score = 97.6 bits (49), Expect = 6e-17
 Identities = 79/89 (88%)
 Strand = Plus / Plus

                                                                         
Query: 146   ctggccgtgggcaacctcgacttcccgctctccgtcgtgcagcagatgatcaggatgtac 205
             |||||||||||||||||||| || |||||||| || || ||||||||||||||||||| |
Sbjct: 27186 ctggccgtgggcaacctcgagtttccgctctcagttgttcagcagatgatcaggatgtgc 27245

                                          
Query: 206   gacttcgatcggaacggcaccatgagctt 234
             ||||| ||| |||| || |||||||||||
Sbjct: 27246 gactttgataggaatggtaccatgagctt 27274



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>emb|CT985397.1| partial cDNA sequence from a Lambda ZAP II normalized full-length
           cDNA library of differentiating xylem from Eucalyptus
           gunnii
          Length = 683

 Score = 87.7 bits (44), Expect = 6e-14
 Identities = 86/100 (86%)
 Strand = Plus / Plus

                                                                       
Query: 174 tctccgtcgtgcagcagatgatcaggatgtacgacttcgatcggaacggcaccatgagct 233
           |||| |||||| ||||||||||||||||||| || |||||  ||||||| |  |||||||
Sbjct: 179 tctcggtcgtggagcagatgatcaggatgtatgatttcgacaggaacgggagtatgagct 238

                                                   
Query: 234 tcgaagagttcttggctcttaacaagttccttcacaaggt 273
           ||||||||||  | ||||| ||||||||||||| ||||||
Sbjct: 239 tcgaagagtttgttgctctcaacaagttccttctcaaggt 278



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>emb|CT982465.1| partial cDNA sequence from a Lambda ZAP II normalized full-length
           cDNA library of differentiating xylem from Eucalyptus
           gunnii
          Length = 801

 Score = 87.7 bits (44), Expect = 6e-14
 Identities = 86/100 (86%)
 Strand = Plus / Plus

                                                                       
Query: 174 tctccgtcgtgcagcagatgatcaggatgtacgacttcgatcggaacggcaccatgagct 233
           |||| |||||| ||||||||||||||||||| || |||||  ||||||| |  |||||||
Sbjct: 172 tctcggtcgtggagcagatgatcaggatgtatgatttcgacaggaacgggagtatgagct 231

                                                   
Query: 234 tcgaagagttcttggctcttaacaagttccttcacaaggt 273
           ||||||||||  | ||||| ||||||||||||| ||||||
Sbjct: 232 tcgaagagtttgttgctctcaacaagttccttctcaaggt 271



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>gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome
          Length = 2256640

 Score = 48.1 bits (24), Expect = 0.053
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                       
Query: 91      ccgcgtcgacgccgccggcaccgg 114
               ||||||||||||||||||||||||
Sbjct: 1041063 ccgcgtcgacgccgccggcaccgg 1041086



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>gb|AY190297.1| Streptomyces tendae xylanase gene, complete cds
          Length = 1440

 Score = 44.1 bits (22), Expect = 0.83
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 98   gacgccgccggcaccggcaacg 119
            ||||||||||||||||||||||
Sbjct: 1225 gacgccgccggcaccggcaacg 1246



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>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome
          Length = 3147090

 Score = 44.1 bits (22), Expect = 0.83
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 95      gtcgacgccgccggcaccggca 116
               ||||||||||||||||||||||
Sbjct: 1739076 gtcgacgccgccggcaccggca 1739055



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>gb|CP000480.1| Mycobacterium smegmatis str. MC2 155, complete genome
          Length = 6988209

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 95      gtcgacgccgccggcaccggcaacg 119
               |||||||||||||||| ||||||||
Sbjct: 6151610 gtcgacgccgccggcatcggcaacg 6151586



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>ref|NM_001052690.1| Oryza sativa (japonica cultivar-group) Os02g0191200 (Os02g0191200)
            mRNA, complete cds
          Length = 2061

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 551  actgcaggatatagctctattactg 575
            |||||||||||||| ||||||||||
Sbjct: 1624 actgcaggatatagttctattactg 1648



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>dbj|AB231867.1| Nematostella vectensis gene for zinc finger protein Nv-ZicA, complete
             cds
          Length = 186420

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 594   aggaagaccaaaaagaagaaa 614
             |||||||||||||||||||||
Sbjct: 56385 aggaagaccaaaaagaagaaa 56365



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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 105     ccggcaccggcaacgtcacgg 125
               |||||||||||||||||||||
Sbjct: 2966854 ccggcaccggcaacgtcacgg 2966834



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>ref|XM_805375.1| Trypanosoma cruzi strain CL Brener hypothetical protein
            (Tc00.1047053506575.50) partial mRNA
          Length = 4251

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 594  aggaagaccaaaaagaagaaa 614
            |||||||||||||||||||||
Sbjct: 3769 aggaagaccaaaaagaagaaa 3789



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2
          Length = 35954743

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 551     actgcaggatatagctctattactg 575
               |||||||||||||| ||||||||||
Sbjct: 5056130 actgcaggatatagttctattactg 5056154



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>dbj|AP005849.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBb0031B09
          Length = 132729

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 551    actgcaggatatagctctattactg 575
              |||||||||||||| ||||||||||
Sbjct: 127256 actgcaggatatagttctattactg 127280



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>dbj|AP005785.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0453H10
          Length = 133464

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 551   actgcaggatatagctctattactg 575
             |||||||||||||| ||||||||||
Sbjct: 16628 actgcaggatatagttctattactg 16652



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>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome
          Length = 2595221

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 87     tcgaccgcgtcgacgccgccg 107
              |||||||||||||||||||||
Sbjct: 420137 tcgaccgcgtcgacgccgccg 420117


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 148,825,956
Number of extensions: 7849680
Number of successful extensions: 158852
Number of sequences better than 10.0: 16
Number of HSP's gapped: 158851
Number of HSP's successfully gapped: 16
Length of query: 873
Length of database: 18,610,659,111
Length adjustment: 22
Effective length of query: 851
Effective length of database: 18,508,616,841
Effective search space: 15750832931691
Effective search space used: 15750832931691
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
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