ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf3d13 |
|---|---|
| Clone Library Name | barley_pub |
>Q23835:AMY1_DROAN Alpha-amylase 1 precursor - Drosophila ananassae (Fruit fly)| Length = 494 Score = 34.7 bits (78), Expect = 1.5 Identities = 15/45 (33%), Positives = 25/45 (55%) Frame = +3 Query: 429 EQFSSPSFCQDQNCCS*W*LQHR**RLLDIGEFQQAYRSSTGQNW 563 + +SPSF D +C W +HR ++ ++ +F+ A S QNW Sbjct: 363 QNIASPSFNSDNSCSGGWVCEHRWRQIYNMVDFRNAVGSDAIQNW 407
>O76263:AMYR_DROWI Alpha-amylase-related protein precursor - Drosophila willistoni| (Fruit fly) Length = 492 Score = 34.3 bits (77), Expect = 1.9 Identities = 16/49 (32%), Positives = 25/49 (51%) Frame = +3 Query: 417 QPTREQFSSPSFCQDQNCCS*W*LQHR**RLLDIGEFQQAYRSSTGQNW 563 Q +EQ SP F D C + W +HR ++ ++ EF+ R + NW Sbjct: 357 QDAQEQLISPEFDADGGCTNGWICEHRWRQIYNMVEFKNTVRDTELTNW 405
>P19573:NOSZ_PSEST Nitrous-oxide reductase precursor - Pseudomonas stutzeri| (Pseudomonas perfectomarina) Length = 638 Score = 33.9 bits (76), Expect = 2.5 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 3/72 (4%) Frame = +1 Query: 487 FNIDNEDCWTLENFSRHIVRPRDKIGAVLTGEL---EVSLKNGKADLRDATFIDNSKFTR 657 FN+D+ W L N SRHI+ K L G+ +S+ +GK D + FI++ +R Sbjct: 99 FNVDSATGWGLTNESRHIMGDSAKF---LNGDCHHPHISMTDGKYDGK-YLFINDKANSR 154 Query: 658 SGKFRLGVMVVD 693 + RL +M D Sbjct: 155 VARIRLDIMKCD 166
>Q01710:NOSZ2_PSEAE Nitrous-oxide reductase precursor - Pseudomonas aeruginosa| Length = 634 Score = 33.9 bits (76), Expect = 2.5 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 3/72 (4%) Frame = +1 Query: 487 FNIDNEDCWTLENFSRHIVRPRDKIGAVLTGEL---EVSLKNGKADLRDATFIDNSKFTR 657 FN+D+ W L N SRHI+ K L G+ +S+ +GK D + FI++ +R Sbjct: 95 FNVDSATGWGLTNESRHILGDTAKF---LNGDCHHPHISMTDGKYDGK-YLFINDKANSR 150 Query: 658 SGKFRLGVMVVD 693 + RL +M D Sbjct: 151 VARIRLDIMKCD 162
>P24446:GCVK_HHV6U Probable ganciclovir kinase - Human herpesvirus 6A (strain| Uganda-1102) (HHV-6 variant A) (Human B lymphotropic virus) Length = 562 Score = 33.5 bits (75), Expect = 3.3 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 2/48 (4%) Frame = +1 Query: 604 GKADLRDATFIDNSKFTRSGKFRLGVMVVDG--LGERILEGITEPFTV 741 G DL +ATF++NSK TR R G+ + GE++L + E F + Sbjct: 499 GSRDLFEATFLNNSKLTRRQPIREGLASLQSSEYGEKLLHDLRELFLI 546
>P32242:OTX1_HUMAN Homeobox protein OTX1 - Homo sapiens (Human)| Length = 354 Score = 33.1 bits (74), Expect = 4.3 Identities = 17/47 (36%), Positives = 21/47 (44%) Frame = -2 Query: 904 HPCNMTSRNPSQKRCHSV*VPHGRHHPLKFSAGAKHHHPMMEWHAFG 764 HP ++ PS H PH HHPL S+G HHH +G Sbjct: 260 HPHQLSPMAPSSMAGHHHHHPHA-HHPLSQSSGHHHHHHHHHHQGYG 305
>P0A2E8:FLIA_SALTY RNA polymerase sigma factor for flagellar operon - Salmonella| typhimurium Length = 239 Score = 33.1 bits (74), Expect = 4.3 Identities = 27/100 (27%), Positives = 54/100 (54%), Gaps = 1/100 (1%) Frame = +1 Query: 316 YKLRFLNGLSNEVFTKKEIRCANGDPLKICLEDNNQQENNSRRLLSAKIKIVVLDGDFNI 495 Y+ L+ ++++F+ E R +GD +++ E++ QQEN +LL ++ V+D ++ Sbjct: 131 YRQMLLDTNNSQLFSYDEWREEHGDSIELVTEEH-QQENPLHQLLEGDLRQRVMDAIESL 189 Query: 496 DNEDCWTLENFSRHIVRPRDKIGAVL-TGELEVSLKNGKA 612 + L + + + ++ IGAVL GE VS + +A Sbjct: 190 PEREQLVLTLYYQEELNLKE-IGAVLEVGESRVSQLHSQA 228
>P0A2E9:FLIA_SALTI RNA polymerase sigma factor for flagellar operon - Salmonella typhi| Length = 239 Score = 33.1 bits (74), Expect = 4.3 Identities = 27/100 (27%), Positives = 54/100 (54%), Gaps = 1/100 (1%) Frame = +1 Query: 316 YKLRFLNGLSNEVFTKKEIRCANGDPLKICLEDNNQQENNSRRLLSAKIKIVVLDGDFNI 495 Y+ L+ ++++F+ E R +GD +++ E++ QQEN +LL ++ V+D ++ Sbjct: 131 YRQMLLDTNNSQLFSYDEWREEHGDSIELVTEEH-QQENPLHQLLEGDLRQRVMDAIESL 189 Query: 496 DNEDCWTLENFSRHIVRPRDKIGAVL-TGELEVSLKNGKA 612 + L + + + ++ IGAVL GE VS + +A Sbjct: 190 PEREQLVLTLYYQEELNLKE-IGAVLEVGESRVSQLHSQA 228
>O18420:AMYR_DROSU Alpha-amylase-related protein precursor - Drosophila subobscura| (Fruit fly) Length = 494 Score = 33.1 bits (74), Expect = 4.3 Identities = 17/53 (32%), Positives = 26/53 (49%) Frame = +3 Query: 405 SGGQQPTREQFSSPSFCQDQNCCS*W*LQHR**RLLDIGEFQQAYRSSTGQNW 563 S Q +EQ SP F D C + W +HR ++ ++ F+ A R + NW Sbjct: 355 SAPPQNAQEQLISPEFDSDGACVNGWICEHRWRQIYNMVGFKNAVRDTPVTNW 407
>O18552:AMYR_DROPS Alpha-amylase-related protein precursor - Drosophila pseudoobscura| (Fruit fly) Length = 494 Score = 33.1 bits (74), Expect = 4.3 Identities = 16/53 (30%), Positives = 26/53 (49%) Frame = +3 Query: 405 SGGQQPTREQFSSPSFCQDQNCCS*W*LQHR**RLLDIGEFQQAYRSSTGQNW 563 S Q +E+ SP F D C + W +HR ++ ++ F+ A R + NW Sbjct: 355 SAPPQDAQEELISPEFDADGGCANGWICEHRWRQIYNMVGFKNAVRDTEISNW 407
>O18345:AMY2_DROAN Alpha-amylase 2 precursor - Drosophila ananassae (Fruit fly)| Length = 494 Score = 33.1 bits (74), Expect = 4.3 Identities = 15/45 (33%), Positives = 24/45 (53%) Frame = +3 Query: 429 EQFSSPSFCQDQNCCS*W*LQHR**RLLDIGEFQQAYRSSTGQNW 563 + +SPSF D +C W +HR ++ ++ F+ A S QNW Sbjct: 363 QNIASPSFNSDNSCSGGWVCEHRWKQIYNMVGFRNAVGSDAIQNW 407
>P54822:PUR8_MOUSE Adenylosuccinate lyase - Mus musculus (Mouse)| Length = 484 Score = 32.7 bits (73), Expect = 5.6 Identities = 15/41 (36%), Positives = 24/41 (58%) Frame = -1 Query: 1850 LINLTEMSK*HDYISVNYSSICYSGNPLRSD*CCCLASRIV 1728 L NL EM + + + S++ Y NP+RS+ CC LA ++ Sbjct: 272 LANLKEMEEPFEKQQIGSSAMPYKRNPMRSERCCSLARHLM 312
>Q8HXY5:PUR8_MACFA Adenylosuccinate lyase - Macaca fascicularis (Crab eating macaque)| (Cynomolgus monkey) Length = 484 Score = 32.7 bits (73), Expect = 5.6 Identities = 15/41 (36%), Positives = 24/41 (58%) Frame = -1 Query: 1850 LINLTEMSK*HDYISVNYSSICYSGNPLRSD*CCCLASRIV 1728 L NL EM + + + S++ Y NP+RS+ CC LA ++ Sbjct: 272 LANLKEMEEPFEKQQIGSSAMPYKRNPMRSERCCSLARHLM 312
>P30566:PUR8_HUMAN Adenylosuccinate lyase - Homo sapiens (Human)| Length = 484 Score = 32.7 bits (73), Expect = 5.6 Identities = 15/41 (36%), Positives = 24/41 (58%) Frame = -1 Query: 1850 LINLTEMSK*HDYISVNYSSICYSGNPLRSD*CCCLASRIV 1728 L NL EM + + + S++ Y NP+RS+ CC LA ++ Sbjct: 272 LANLKEMEEPFEKQQIGSSAMPYKRNPMRSERCCSLARHLM 312
>Q63410:OTX1_RAT Homeobox protein OTX1 - Rattus norvegicus (Rat)| Length = 355 Score = 32.7 bits (73), Expect = 5.6 Identities = 16/38 (42%), Positives = 19/38 (50%) Frame = -2 Query: 904 HPCNMTSRNPSQKRCHSV*VPHGRHHPLKFSAGAKHHH 791 HP ++ PS H PH HHPL S+G HHH Sbjct: 260 HPHQLSPMAPSSMAGHHHHHPHA-HHPLSQSSGHHHHH 296
>P80205:OTX1_MOUSE Homeobox protein OTX1 - Mus musculus (Mouse)| Length = 355 Score = 32.7 bits (73), Expect = 5.6 Identities = 16/38 (42%), Positives = 19/38 (50%) Frame = -2 Query: 904 HPCNMTSRNPSQKRCHSV*VPHGRHHPLKFSAGAKHHH 791 HP ++ PS H PH HHPL S+G HHH Sbjct: 260 HPHQLSPMAPSSMAGHHHHHPHA-HHPLSQSSGHHHHH 296
>Q5FQB9:TOLB_GLUOX Protein tolB precursor - Gluconobacter oxydans (Gluconobacter| suboxydans) Length = 453 Score = 32.0 bits (71), Expect = 9.6 Identities = 21/33 (63%), Positives = 22/33 (66%), Gaps = 2/33 (6%) Frame = +1 Query: 649 FTR--SGKFRLGVMVVDGLGERILEGITEPFTV 741 FTR SG F LGVM DG GERIL T+ FTV Sbjct: 364 FTRIGSGGFSLGVMNPDGTGERIL---TQGFTV 393 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 354,879,285 Number of extensions: 8083347 Number of successful extensions: 20963 Number of sequences better than 10.0: 17 Number of HSP's gapped: 20946 Number of HSP's successfully gapped: 17 Length of query: 653 Length of database: 100,686,439 Length adjustment: 120 Effective length of query: 533 Effective length of database: 67,771,039 Effective search space: 36121963787 Effective search space used: 36121963787 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
