| Clone Name | FLbaf3d13 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001073533.1| Oryza sativa (japonica cultivar-group) Os12g0556200 (Os12g0556200) mRNA, complete cds Length = 2086 Score = 276 bits (139), Expect = 3e-70 Identities = 457/563 (81%) Strand = Plus / Plus Query: 301 aaccagactccaagatacaagcttaggttcctgaatggcttgagtaatgaagttttcaca 360 |||||| ||||||| ||||||||||||||| ||||||||||| ||||||||||||||| Sbjct: 341 aaccagcctccaaggtacaagcttaggttctcaaatggcttgagcaatgaagttttcaca 400 Query: 361 aaaaaggaaatccgttgtgcaaatggtgatcctctcaagatatgtctggaggacaacaac 420 || || | |||| || || ||||| || |||||||||||| | || | | |||||| Sbjct: 401 aagaaaggaatctgtgatgttaatggagagtctctcaagatatctgtgcatgtaaacaac 460 Query: 421 caacaagagaacaattctcgtcgccttctttctgccaagatcaaaattgttgttcttgat 480 | ||||||| | || | ||||||||||||||| ||||||| | |||||||||||||| Sbjct: 461 ccacaagaggcctgctcgcatcgccttctttctgctaagatcagagttgttgttcttgat 520 Query: 481 ggtgacttcaacatagataatgaagattgctggacattggagaatttcagcaggcatatc 540 ||||||||||||| || || | | |||||||||| ||| | ||||| | || || Sbjct: 521 ggtgacttcaacaagaatgatcaggggtgctggacatcagaggagttcagaaaccacata 580 Query: 541 gttcgtccacgggacaaaattggggcagtgctgaccggagagctggaggttagcctaaag 600 || || ||||| || ||| ||||| | |||||||| |||||||| ||| ||||||| || Sbjct: 581 gtgcgcccacgtgataaagttgggactgtgctgactggagagcttgagcttagcctgaaa 640 Query: 601 aatggcaaagctgatctccgtgatgctacatttattgataactccaagttcacgaggagt 660 ||||| | ||| | ||| |||||| || ||| |||||||||||||||||| ||||||| Sbjct: 641 aatggagaggcttacatccatgatgccacttttgttgataactccaagttcatgaggagt 700 Query: 661 ggcaagttcaggcttggggtaatggttgttgacgggcttggtgaacggatcctagaaggg 720 || |||||||| ||||||||||||||| |||| | || |||||||| || | ||||| Sbjct: 701 ggtaagttcagacttggggtaatggttattgatgatctcggtgaacgtattcaggaaggc 760 Query: 721 ataactgaacctttcacagtaaaggatcgtcgtggagaaggataccaaaagcatgccatt 780 ||||||||||||||| || ||||||||||| |||||||| | | ||||||||| ||| Sbjct: 761 ataactgaacctttcgttgtgaaggatcgtcgcggagaaggttccaaaaagcatgaaatt 820 Query: 781 ccatcattggatgatgatgtttggcgcctgcagaaaatttcaaaggatggtgtcttccat 840 |||||||||||||||||||| ||||||||| |||| || ||||| ||||||||||||||| Sbjct: 821 ccatcattggatgatgatgtctggcgcctgaagaagatatcaaaagatggtgtcttccat 880 Query: 841 ggggcactcaaacggagtggcat 863 | ||| | |||| ||||||||| Sbjct: 881 gatgcattgaaacagagtggcat 903 Score = 69.9 bits (35), Expect = 3e-08 Identities = 59/67 (88%) Strand = Plus / Plus Query: 89 cggcgatgaagaagaggtgccgctccttcgacctggagatcaggggatgcaggcatctgg 148 ||||| |||||||| ||||||| || |||||||| ||||||||||| |||||||| ||| Sbjct: 150 cggcgctgaagaagcggtgccggtcgttcgacctagagatcaggggttgcaggcacctgc 209 Query: 149 aggagct 155 ||||||| Sbjct: 210 aggagct 216 Score = 65.9 bits (33), Expect = 5e-07 Identities = 81/97 (83%) Strand = Plus / Plus Query: 949 tggacgactattattgatcatgctaaaaggtgtgatcctggaaaggagctctactctttc 1008 ||||||||||| ||||| |||||||| | |||||||||||||| ||||| ||||||||| Sbjct: 989 tggacgactatcattgagcatgctaagaagtgtgatcctggaagagagctgtactctttc 1048 Query: 1009 atcgtggaaggccataatgttgtcctgttcttcaact 1045 | |||| || |||||||| ||||||||||||| Sbjct: 1049 ttgccggaaaaccgcaatgttgtgctgttcttcaact 1085 Score = 46.1 bits (23), Expect = 0.48 Identities = 59/71 (83%) Strand = Plus / Plus Query: 205 gagtctgccatcagccggataccagaagcggtgactaaagcgattacaggctacttaagc 264 ||||| ||||| |||||||| ||||| | |||||| ||||| ||||| ||| | ||| | Sbjct: 254 gagtccgccattagccggattccagaggaggtgacaaaagcacttacaagcttcctaatc 313 Query: 265 cgtgctcctag 275 ||||||||||| Sbjct: 314 cgtgctcctag 324
>dbj|AK102354.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033091G14, full insert sequence Length = 2087 Score = 276 bits (139), Expect = 3e-70 Identities = 457/563 (81%) Strand = Plus / Plus Query: 301 aaccagactccaagatacaagcttaggttcctgaatggcttgagtaatgaagttttcaca 360 |||||| ||||||| ||||||||||||||| ||||||||||| ||||||||||||||| Sbjct: 342 aaccagcctccaaggtacaagcttaggttctcaaatggcttgagcaatgaagttttcaca 401 Query: 361 aaaaaggaaatccgttgtgcaaatggtgatcctctcaagatatgtctggaggacaacaac 420 || || | |||| || || ||||| || |||||||||||| | || | | |||||| Sbjct: 402 aagaaaggaatctgtgatgttaatggagagtctctcaagatatctgtgcatgtaaacaac 461 Query: 421 caacaagagaacaattctcgtcgccttctttctgccaagatcaaaattgttgttcttgat 480 | ||||||| | || | ||||||||||||||| ||||||| | |||||||||||||| Sbjct: 462 ccacaagaggcctgctcgcatcgccttctttctgctaagatcagagttgttgttcttgat 521 Query: 481 ggtgacttcaacatagataatgaagattgctggacattggagaatttcagcaggcatatc 540 ||||||||||||| || || | | |||||||||| ||| | ||||| | || || Sbjct: 522 ggtgacttcaacaagaatgatcaggggtgctggacatcagaggagttcagaaaccacata 581 Query: 541 gttcgtccacgggacaaaattggggcagtgctgaccggagagctggaggttagcctaaag 600 || || ||||| || ||| ||||| | |||||||| |||||||| ||| ||||||| || Sbjct: 582 gtgcgcccacgtgataaagttgggactgtgctgactggagagcttgagcttagcctgaaa 641 Query: 601 aatggcaaagctgatctccgtgatgctacatttattgataactccaagttcacgaggagt 660 ||||| | ||| | ||| |||||| || ||| |||||||||||||||||| ||||||| Sbjct: 642 aatggagaggcttacatccatgatgccacttttgttgataactccaagttcatgaggagt 701 Query: 661 ggcaagttcaggcttggggtaatggttgttgacgggcttggtgaacggatcctagaaggg 720 || |||||||| ||||||||||||||| |||| | || |||||||| || | ||||| Sbjct: 702 ggtaagttcagacttggggtaatggttattgatgatctcggtgaacgtattcaggaaggc 761 Query: 721 ataactgaacctttcacagtaaaggatcgtcgtggagaaggataccaaaagcatgccatt 780 ||||||||||||||| || ||||||||||| |||||||| | | ||||||||| ||| Sbjct: 762 ataactgaacctttcgttgtgaaggatcgtcgcggagaaggttccaaaaagcatgaaatt 821 Query: 781 ccatcattggatgatgatgtttggcgcctgcagaaaatttcaaaggatggtgtcttccat 840 |||||||||||||||||||| ||||||||| |||| || ||||| ||||||||||||||| Sbjct: 822 ccatcattggatgatgatgtctggcgcctgaagaagatatcaaaagatggtgtcttccat 881 Query: 841 ggggcactcaaacggagtggcat 863 | ||| | |||| ||||||||| Sbjct: 882 gatgcattgaaacagagtggcat 904 Score = 69.9 bits (35), Expect = 3e-08 Identities = 59/67 (88%) Strand = Plus / Plus Query: 89 cggcgatgaagaagaggtgccgctccttcgacctggagatcaggggatgcaggcatctgg 148 ||||| |||||||| ||||||| || |||||||| ||||||||||| |||||||| ||| Sbjct: 151 cggcgctgaagaagcggtgccggtcgttcgacctagagatcaggggttgcaggcacctgc 210 Query: 149 aggagct 155 ||||||| Sbjct: 211 aggagct 217 Score = 65.9 bits (33), Expect = 5e-07 Identities = 81/97 (83%) Strand = Plus / Plus Query: 949 tggacgactattattgatcatgctaaaaggtgtgatcctggaaaggagctctactctttc 1008 ||||||||||| ||||| |||||||| | |||||||||||||| ||||| ||||||||| Sbjct: 990 tggacgactatcattgagcatgctaagaagtgtgatcctggaagagagctgtactctttc 1049 Query: 1009 atcgtggaaggccataatgttgtcctgttcttcaact 1045 | |||| || |||||||| ||||||||||||| Sbjct: 1050 ttgccggaaaaccgcaatgttgtgctgttcttcaact 1086 Score = 46.1 bits (23), Expect = 0.48 Identities = 59/71 (83%) Strand = Plus / Plus Query: 205 gagtctgccatcagccggataccagaagcggtgactaaagcgattacaggctacttaagc 264 ||||| ||||| |||||||| ||||| | |||||| ||||| ||||| ||| | ||| | Sbjct: 255 gagtccgccattagccggattccagaggaggtgacaaaagcacttacaagcttcctaatc 314 Query: 265 cgtgctcctag 275 ||||||||||| Sbjct: 315 cgtgctcctag 325
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12 Length = 27566993 Score = 194 bits (98), Expect = 8e-46 Identities = 386/482 (80%) Strand = Plus / Plus Query: 280 tgcagaacgctggttgaccaaaaccagactccaagatacaagcttaggttcctgaatggc 339 |||||||| ||| ||| || |||||| ||||||| ||||||||||||||| |||||| Sbjct: 22664062 tgcagaacactgtctgatcagaaccagcctccaaggtacaagcttaggttctcaaatggc 22664121 Query: 340 ttgagtaatgaagttttcacaaaaaaggaaatccgttgtgcaaatggtgatcctctcaag 399 ||||| ||||||||||||||||| || | |||| || || ||||| || |||||||| Sbjct: 22664122 ttgagcaatgaagttttcacaaagaaaggaatctgtgatgttaatggagagtctctcaag 22664181 Query: 400 atatgtctggaggacaacaaccaacaagagaacaattctcgtcgccttctttctgccaag 459 |||| | || | | ||||||| ||||||| | || | ||||||||||||||| ||| Sbjct: 22664182 atatctgtgcatgtaaacaacccacaagaggcctgctcgcatcgccttctttctgctaag 22664241 Query: 460 atcaaaattgttgttcttgatggtgacttcaacatagataatgaagattgctggacattg 519 |||| | ||||||||||||||||||||||||||| || || | | |||||||||| Sbjct: 22664242 atcagagttgttgttcttgatggtgacttcaacaagaatgatcaggggtgctggacatca 22664301 Query: 520 gagaatttcagcaggcatatcgttcgtccacgggacaaaattggggcagtgctgaccgga 579 ||| | ||||| | || || || || ||||| || ||| ||||| | |||||||| ||| Sbjct: 22664302 gaggagttcagaaaccacatagtgcgcccacgtgataaagttgggactgtgctgactgga 22664361 Query: 580 gagctggaggttagcctaaagaatggcaaagctgatctccgtgatgctacatttattgat 639 ||||| ||| ||||||| || ||||| | ||| | ||| |||||| || ||| ||||| Sbjct: 22664362 gagcttgagcttagcctgaaaaatggagaggcttacatccatgatgccacttttgttgat 22664421 Query: 640 aactccaagttcacgaggagtggcaagttcaggcttggggtaatggttgttgacgggctt 699 ||||||||||||| ||||||||| |||||||| ||||||||||||||| |||| | || Sbjct: 22664422 aactccaagttcatgaggagtggtaagttcagacttggggtaatggttattgatgatctc 22664481 Query: 700 ggtgaacggatcctagaagggataactgaacctttcacagtaaaggatcgtcgtggagaa 759 |||||||| || | ||||| ||||||||||||||| || ||||||||||| |||||| Sbjct: 22664482 ggtgaacgtattcaggaaggcataactgaacctttcgttgtgaaggatcgtcgcggagaa 22664541 Query: 760 gg 761 || Sbjct: 22664542 gg 22664543 Score = 97.6 bits (49), Expect = 1e-16 Identities = 85/97 (87%) Strand = Plus / Plus Query: 767 aaaagcatgccattccatcattggatgatgatgtttggcgcctgcagaaaatttcaaagg 826 ||||||||| ||||||||||||||||||||||| ||||||||| |||| || ||||| | Sbjct: 22664651 aaaagcatgaaattccatcattggatgatgatgtctggcgcctgaagaagatatcaaaag 22664710 Query: 827 atggtgtcttccatggggcactcaaacggagtggcat 863 ||||||||||||||| ||| | |||| ||||||||| Sbjct: 22664711 atggtgtcttccatgatgcattgaaacagagtggcat 22664747 Score = 65.9 bits (33), Expect = 5e-07 Identities = 81/97 (83%) Strand = Plus / Plus Query: 949 tggacgactattattgatcatgctaaaaggtgtgatcctggaaaggagctctactctttc 1008 ||||||||||| ||||| |||||||| | |||||||||||||| ||||| ||||||||| Sbjct: 22664916 tggacgactatcattgagcatgctaagaagtgtgatcctggaagagagctgtactctttc 22664975 Query: 1009 atcgtggaaggccataatgttgtcctgttcttcaact 1045 | |||| || |||||||| ||||||||||||| Sbjct: 22664976 ttgccggaaaaccgcaatgttgtgctgttcttcaact 22665012 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 470 ttgttcttgatggtgacttca 490 ||||||||||||||||||||| Sbjct: 13043191 ttgttcttgatggtgacttca 13043211
>emb|AL845342.2|CNS08CB4 Oryza sativa chromosome 12, . BAC OSJNBa0027H05 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 138368 Score = 194 bits (98), Expect = 8e-46 Identities = 386/482 (80%) Strand = Plus / Plus Query: 280 tgcagaacgctggttgaccaaaaccagactccaagatacaagcttaggttcctgaatggc 339 |||||||| ||| ||| || |||||| ||||||| ||||||||||||||| |||||| Sbjct: 109182 tgcagaacactgtctgatcagaaccagcctccaaggtacaagcttaggttctcaaatggc 109241 Query: 340 ttgagtaatgaagttttcacaaaaaaggaaatccgttgtgcaaatggtgatcctctcaag 399 ||||| ||||||||||||||||| || | |||| || || ||||| || |||||||| Sbjct: 109242 ttgagcaatgaagttttcacaaagaaaggaatctgtgatgttaatggagagtctctcaag 109301 Query: 400 atatgtctggaggacaacaaccaacaagagaacaattctcgtcgccttctttctgccaag 459 |||| | || | | ||||||| ||||||| | || | ||||||||||||||| ||| Sbjct: 109302 atatctgtgcatgtaaacaacccacaagaggcctgctcgcatcgccttctttctgctaag 109361 Query: 460 atcaaaattgttgttcttgatggtgacttcaacatagataatgaagattgctggacattg 519 |||| | ||||||||||||||||||||||||||| || || | | |||||||||| Sbjct: 109362 atcagagttgttgttcttgatggtgacttcaacaagaatgatcaggggtgctggacatca 109421 Query: 520 gagaatttcagcaggcatatcgttcgtccacgggacaaaattggggcagtgctgaccgga 579 ||| | ||||| | || || || || ||||| || ||| ||||| | |||||||| ||| Sbjct: 109422 gaggagttcagaaaccacatagtgcgcccacgtgataaagttgggactgtgctgactgga 109481 Query: 580 gagctggaggttagcctaaagaatggcaaagctgatctccgtgatgctacatttattgat 639 ||||| ||| ||||||| || ||||| | ||| | ||| |||||| || ||| ||||| Sbjct: 109482 gagcttgagcttagcctgaaaaatggagaggcttacatccatgatgccacttttgttgat 109541 Query: 640 aactccaagttcacgaggagtggcaagttcaggcttggggtaatggttgttgacgggctt 699 ||||||||||||| ||||||||| |||||||| ||||||||||||||| |||| | || Sbjct: 109542 aactccaagttcatgaggagtggtaagttcagacttggggtaatggttattgatgatctc 109601 Query: 700 ggtgaacggatcctagaagggataactgaacctttcacagtaaaggatcgtcgtggagaa 759 |||||||| || | ||||| ||||||||||||||| || ||||||||||| |||||| Sbjct: 109602 ggtgaacgtattcaggaaggcataactgaacctttcgttgtgaaggatcgtcgcggagaa 109661 Query: 760 gg 761 || Sbjct: 109662 gg 109663 Score = 97.6 bits (49), Expect = 1e-16 Identities = 85/97 (87%) Strand = Plus / Plus Query: 767 aaaagcatgccattccatcattggatgatgatgtttggcgcctgcagaaaatttcaaagg 826 ||||||||| ||||||||||||||||||||||| ||||||||| |||| || ||||| | Sbjct: 109771 aaaagcatgaaattccatcattggatgatgatgtctggcgcctgaagaagatatcaaaag 109830 Query: 827 atggtgtcttccatggggcactcaaacggagtggcat 863 ||||||||||||||| ||| | |||| ||||||||| Sbjct: 109831 atggtgtcttccatgatgcattgaaacagagtggcat 109867 Score = 65.9 bits (33), Expect = 5e-07 Identities = 81/97 (83%) Strand = Plus / Plus Query: 949 tggacgactattattgatcatgctaaaaggtgtgatcctggaaaggagctctactctttc 1008 ||||||||||| ||||| |||||||| | |||||||||||||| ||||| ||||||||| Sbjct: 110036 tggacgactatcattgagcatgctaagaagtgtgatcctggaagagagctgtactctttc 110095 Query: 1009 atcgtggaaggccataatgttgtcctgttcttcaact 1045 | |||| || |||||||| ||||||||||||| Sbjct: 110096 ttgccggaaaaccgcaatgttgtgctgttcttcaact 110132
>emb|AL133268.15| Human DNA sequence from clone RP3-425P12 on chromosome 6p21.33-22.3 Contains 3 novel genes, a nucleoporin 50kD (NUP50) (NPAP60 NPAP60L) pseudogene and the CMAH gene for cytidine monophosphate-N-acetylneuraminic acid hydroxylase (CMP-N-acetylneuraminate monooxygenase) (CSAH), complete sequence Length = 110794 Score = 46.1 bits (23), Expect = 0.48 Identities = 29/31 (93%) Strand = Plus / Minus Query: 408 ggaggacaacaaccaacaagagaacaattct 438 ||||||||||||| ||||| ||||||||||| Sbjct: 104564 ggaggacaacaacaaacaaaagaacaattct 104534
>gb|AY780645.1| Lactobacillus reuteri CRL1098 cobalamin gene cluster, partial sequence Length = 43444 Score = 46.1 bits (23), Expect = 0.48 Identities = 23/23 (100%) Strand = Plus / Plus Query: 463 aaaattgttgttcttgatggtga 485 ||||||||||||||||||||||| Sbjct: 40830 aaaattgttgttcttgatggtga 40852
>dbj|AB009668.1| Homo sapiens gene for CMP-N-acetylneuraminic acid hydroxylase, partial cds Length = 22810 Score = 46.1 bits (23), Expect = 0.48 Identities = 29/31 (93%) Strand = Plus / Plus Query: 408 ggaggacaacaaccaacaagagaacaattct 438 ||||||||||||| ||||| ||||||||||| Sbjct: 1906 ggaggacaacaacaaacaaaagaacaattct 1936
>gb|CP000432.1| Rhodococcus sp. RHA1 plasmid pRHL1, complete sequence Length = 1123075 Score = 44.1 bits (22), Expect = 1.9 Identities = 28/30 (93%) Strand = Plus / Minus Query: 63 ggcctcgccgtcgccggcgcgttcgccggc 92 |||| |||||||||| |||||||||||||| Sbjct: 292419 ggccgcgccgtcgcccgcgcgttcgccggc 292390
>gb|AF446240.1| Streptococcus pneumoniae strain IC222 penicillin-binding protein 2X (pbp2x) gene, partial cds Length = 1983 Score = 44.1 bits (22), Expect = 1.9 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1238 tcatgctggaacctaaatttat 1259 |||||||||||||||||||||| Sbjct: 1151 tcatgctggaacctaaatttat 1172
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 44.1 bits (22), Expect = 1.9 Identities = 22/22 (100%) Strand = Plus / Plus Query: 953 cgactattattgatcatgctaa 974 |||||||||||||||||||||| Sbjct: 26339566 cgactattattgatcatgctaa 26339587
>emb|AL358113.21| Human DNA sequence from clone RP11-16N10 on chromosome 9q13-21.33 Contains the TJP2 gene for tight junction protein 2 (zona occludens 2) (X104, ZO-2) and two CpG islands, complete sequence Length = 129719 Score = 44.1 bits (22), Expect = 1.9 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1581 ttttgtaagcaatgatgcttca 1602 |||||||||||||||||||||| Sbjct: 81035 ttttgtaagcaatgatgcttca 81014
>emb|Y18686.1|SPN18686 Streptococcus pneumoniae pbpX gene, strain 473A Length = 1921 Score = 44.1 bits (22), Expect = 1.9 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1238 tcatgctggaacctaaatttat 1259 |||||||||||||||||||||| Sbjct: 1122 tcatgctggaacctaaatttat 1143
>gb|AY950548.1| Streptococcus pneumoniae strain 14771 penicillin binding protein (pbp2x) gene, partial cds Length = 1618 Score = 44.1 bits (22), Expect = 1.9 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1238 tcatgctggaacctaaatttat 1259 |||||||||||||||||||||| Sbjct: 893 tcatgctggaacctaaatttat 914
>dbj|AP002485.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:P0491E01 Length = 136150 Score = 44.1 bits (22), Expect = 1.9 Identities = 22/22 (100%) Strand = Plus / Plus Query: 953 cgactattattgatcatgctaa 974 |||||||||||||||||||||| Sbjct: 71918 cgactattattgatcatgctaa 71939
>dbj|AK110510.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-167-G01, full insert sequence Length = 2378 Score = 44.1 bits (22), Expect = 1.9 Identities = 22/22 (100%) Strand = Plus / Plus Query: 69 gccgtcgccggcgcgttcgccg 90 |||||||||||||||||||||| Sbjct: 77 gccgtcgccggcgcgttcgccg 98
>dbj|AB011209.1| Streptococcus pneumoniae pbp2X gene for penicillin binding protein 2X, partial cds, isolate #22/H23 Length = 1063 Score = 44.1 bits (22), Expect = 1.9 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1238 tcatgctggaacctaaatttat 1259 |||||||||||||||||||||| Sbjct: 653 tcatgctggaacctaaatttat 674
>dbj|AB011205.1| Streptococcus pneumoniae pbp2X gene for penicillin binding protein 2X, partial cds, isolate #16/MA37 Length = 1063 Score = 44.1 bits (22), Expect = 1.9 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1238 tcatgctggaacctaaatttat 1259 |||||||||||||||||||||| Sbjct: 653 tcatgctggaacctaaatttat 674
>emb|CR855024.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0160I04, complete sequence Length = 84262 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 470 ttgttcttgatggtgacttca 490 ||||||||||||||||||||| Sbjct: 30077 ttgttcttgatggtgacttca 30057
>emb|CR855238.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0136O08-OSIGBa0153H12, complete sequence Length = 148322 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 470 ttgttcttgatggtgacttca 490 ||||||||||||||||||||| Sbjct: 54474 ttgttcttgatggtgacttca 54454
>emb|CR855175.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0122F23, complete sequence Length = 83373 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 60 aggggcctcgccgtcgccggc 80 ||||||||||||||||||||| Sbjct: 19767 aggggcctcgccgtcgccggc 19787
>ref|NM_001060027.1| Oryza sativa (japonica cultivar-group) Os04g0550700 (Os04g0550700) mRNA, complete cds Length = 1411 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 60 aggggcctcgccgtcgccggc 80 ||||||||||||||||||||| Sbjct: 124 aggggcctcgccgtcgccggc 104
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 72 gtcgccggcgcgttcgccggc 92 ||||||||||||||||||||| Sbjct: 3522969 gtcgccggcgcgttcgccggc 3522949
>gb|AC131966.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAa0028C16, complete sequence Length = 151030 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 470 ttgttcttgatggtgacttca 490 ||||||||||||||||||||| Sbjct: 769 ttgttcttgatggtgacttca 749
>gb|AC146338.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0093C16, complete sequence Length = 206612 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 470 ttgttcttgatggtgacttca 490 ||||||||||||||||||||| Sbjct: 53144 ttgttcttgatggtgacttca 53164
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 42.1 bits (21), Expect = 7.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 68 cgccgtcgccggcgcgttcgccggc 92 ||||||||||||||| ||||||||| Sbjct: 579265 cgccgtcgccggcgccttcgccggc 579241
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 42.1 bits (21), Expect = 7.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 68 cgccgtcgccggcgcgttcgccggc 92 ||||||||||||||| ||||||||| Sbjct: 3195514 cgccgtcgccggcgccttcgccggc 3195538
>gb|AC139885.3| Mus musculus BAC clone RP23-349N15 from chromosome 9, complete sequence Length = 207340 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1191 taatgaaaaaccaagaccaaa 1211 ||||||||||||||||||||| Sbjct: 162890 taatgaaaaaccaagaccaaa 162870
>gb|AC119148.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0035F15, complete sequence Length = 138335 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 470 ttgttcttgatggtgacttca 490 ||||||||||||||||||||| Sbjct: 21479 ttgttcttgatggtgacttca 21499
>emb|CT025689.6| Mouse DNA sequence from clone RP24-236L7 on chromosome 14, complete sequence Length = 177482 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 300 aaaccagactccaagatacaa 320 ||||||||||||||||||||| Sbjct: 118956 aaaccagactccaagatacaa 118936
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10 Length = 22685906 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 470 ttgttcttgatggtgacttca 490 ||||||||||||||||||||| Sbjct: 3137894 ttgttcttgatggtgacttca 3137874 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 470 ttgttcttgatggtgacttca 490 ||||||||||||||||||||| Sbjct: 9533406 ttgttcttgatggtgacttca 9533426
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8 Length = 28434780 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 470 ttgttcttgatggtgacttca 490 ||||||||||||||||||||| Sbjct: 17001956 ttgttcttgatggtgacttca 17001936
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7 Length = 29644043 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 470 ttgttcttgatggtgacttca 490 ||||||||||||||||||||| Sbjct: 9978795 ttgttcttgatggtgacttca 9978815
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6 Length = 30731886 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 470 ttgttcttgatggtgacttca 490 ||||||||||||||||||||| Sbjct: 18871836 ttgttcttgatggtgacttca 18871816 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 62 gggcctcgccgtcgccggcgc 82 ||||||||||||||||||||| Sbjct: 22578876 gggcctcgccgtcgccggcgc 22578896
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5 Length = 29737217 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 470 ttgttcttgatggtgacttca 490 ||||||||||||||||||||| Sbjct: 9822517 ttgttcttgatggtgacttca 9822537
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 470 ttgttcttgatggtgacttca 490 ||||||||||||||||||||| Sbjct: 7732986 ttgttcttgatggtgacttca 7733006 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 470 ttgttcttgatggtgacttca 490 ||||||||||||||||||||| Sbjct: 12516019 ttgttcttgatggtgacttca 12515999 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 470 ttgttcttgatggtgacttca 490 ||||||||||||||||||||| Sbjct: 15604805 ttgttcttgatggtgacttca 15604785 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 470 ttgttcttgatggtgacttca 490 ||||||||||||||||||||| Sbjct: 15738406 ttgttcttgatggtgacttca 15738386 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 60 aggggcctcgccgtcgccggc 80 ||||||||||||||||||||| Sbjct: 27545854 aggggcctcgccgtcgccggc 27545874
>gb|AC098565.3| Oryza sativa chromosome 10 clone OSJNBa0028C16, complete sequence Length = 166757 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 470 ttgttcttgatggtgacttca 490 ||||||||||||||||||||| Sbjct: 107526 ttgttcttgatggtgacttca 107506
>emb|Y16952.3|AME16952 Amycolatopsis balhimycina biosynthetic gene cluster for balhimycin, strain DSM 5908 Length = 66669 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 73 tcgccggcgcgttcgccggcg 93 ||||||||||||||||||||| Sbjct: 55924 tcgccggcgcgttcgccggcg 55944
>emb|BX842603.2|OSJN00300 Oryza sativa genomic DNA, chromosome 4, BAC clone: B1159F04, complete sequence Length = 158330 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 470 ttgttcttgatggtgacttca 490 ||||||||||||||||||||| Sbjct: 64862 ttgttcttgatggtgacttca 64842
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 42.1 bits (21), Expect = 7.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 68 cgccgtcgccggcgcgttcgccggc 92 ||||||||||||||| ||||||||| Sbjct: 2925380 cgccgtcgccggcgccttcgccggc 2925404
>emb|AL939111.1|SCO939111 Streptomyces coelicolor A3(2) complete genome; segment 8/29 Length = 321250 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 63 ggcctcgccgtcgccggcgcg 83 ||||||||||||||||||||| Sbjct: 254136 ggcctcgccgtcgccggcgcg 254116
>emb|AL731644.4|OSJN00287 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0011K22, complete sequence Length = 145766 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 470 ttgttcttgatggtgacttca 490 ||||||||||||||||||||| Sbjct: 68336 ttgttcttgatggtgacttca 68316
>emb|AL731643.4|OSJN00284 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0085C10, complete sequence Length = 202924 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 470 ttgttcttgatggtgacttca 490 ||||||||||||||||||||| Sbjct: 120486 ttgttcttgatggtgacttca 120506
>emb|AL731615.4|OSJN00256 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0065J03, complete sequence Length = 144146 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 470 ttgttcttgatggtgacttca 490 ||||||||||||||||||||| Sbjct: 78206 ttgttcttgatggtgacttca 78226
>emb|AL663000.4|OSJN00201 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0034G17, complete sequence Length = 127259 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 60 aggggcctcgccgtcgccggc 80 ||||||||||||||||||||| Sbjct: 69830 aggggcctcgccgtcgccggc 69850
>gb|AC092645.2| Homo sapiens BAC clone RP11-399B17 from 2, complete sequence Length = 147390 Score = 42.1 bits (21), Expect = 7.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 348 tgaagttttcacaaaaaaggaaatc 372 |||| |||||||||||||||||||| Sbjct: 11091 tgaacttttcacaaaaaaggaaatc 11067
>dbj|AP003684.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0485D10 Length = 147464 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 470 ttgttcttgatggtgacttca 490 ||||||||||||||||||||| Sbjct: 37401 ttgttcttgatggtgacttca 37381
>dbj|AP007273.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBb0035K09 Length = 124866 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 62 gggcctcgccgtcgccggcgc 82 ||||||||||||||||||||| Sbjct: 62828 gggcctcgccgtcgccggcgc 62848
>dbj|AP005966.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:B1047H05 Length = 187273 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 62 gggcctcgccgtcgccggcgc 82 ||||||||||||||||||||| Sbjct: 44285 gggcctcgccgtcgccggcgc 44305
>dbj|AP005201.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0685B06 Length = 140293 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 470 ttgttcttgatggtgacttca 490 ||||||||||||||||||||| Sbjct: 108327 ttgttcttgatggtgacttca 108347
>gb|AF546189.1| Contiguous genomic DNA sequence comprising the 19-kDa-zein gene family from Zea mays, complete sequence Length = 116115 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 470 ttgttcttgatggtgacttca 490 ||||||||||||||||||||| Sbjct: 116049 ttgttcttgatggtgacttca 116029
>dbj|AP004663.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0410E02 Length = 144294 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 470 ttgttcttgatggtgacttca 490 ||||||||||||||||||||| Sbjct: 37473 ttgttcttgatggtgacttca 37453
>dbj|AK106156.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-A05, full insert sequence Length = 1411 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 60 aggggcctcgccgtcgccggc 80 ||||||||||||||||||||| Sbjct: 124 aggggcctcgccgtcgccggc 104
>gb|AC021198.2|F14D7 Sequence of BAC F14D7 from Arabidopsis thaliana chromosome 1, complete sequence Length = 81513 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1749 acaacattaatcagatcttaa 1769 ||||||||||||||||||||| Sbjct: 8622 acaacattaatcagatcttaa 8642
>dbj|AP003797.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1001_C01 Length = 90750 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 470 ttgttcttgatggtgacttca 490 ||||||||||||||||||||| Sbjct: 10444 ttgttcttgatggtgacttca 10464
>dbj|AG266840.1| Oryza officinalis DNA, gypsy-type retrotransposon sequence, clone: RIRE166 Length = 407 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 470 ttgttcttgatggtgacttca 490 ||||||||||||||||||||| Sbjct: 52 ttgttcttgatggtgacttca 32
>gb|AE016830.1| Enterococcus faecalis V583, complete genome Length = 3218031 Score = 42.1 bits (21), Expect = 7.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1819 tgctattttgacatttctgttaaat 1843 |||||||||||||||| |||||||| Sbjct: 1798769 tgctattttgacatttttgttaaat 1798745
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 42.1 bits (21), Expect = 7.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 72 gtcgccggcgcgttcgccggcgatg 96 |||||||||||||||| |||||||| Sbjct: 1297552 gtcgccggcgcgttcggcggcgatg 1297528
>gb|AC133584.12| Mus musculus chromosome 5, clone RP24-448L9, complete sequence Length = 165291 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1034 tgttcttcaactgtttctata 1054 ||||||||||||||||||||| Sbjct: 55562 tgttcttcaactgtttctata 55542
>emb|AL731883.4|CNS08C8N Oryza sativa chromosome 12, . BAC OSJNBa0024B03 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 148110 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 470 ttgttcttgatggtgacttca 490 ||||||||||||||||||||| Sbjct: 24777 ttgttcttgatggtgacttca 24757
>emb|AL731785.2|CNS08C89 Oryza sativa chromosome 12, . BAC OSJNBa0037L20 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 178827 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 470 ttgttcttgatggtgacttca 490 ||||||||||||||||||||| Sbjct: 32394 ttgttcttgatggtgacttca 32414
>emb|CT030639.8| Mouse DNA sequence from clone RP24-318P17 on chromosome 9, complete sequence Length = 198178 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1191 taatgaaaaaccaagaccaaa 1211 ||||||||||||||||||||| Sbjct: 62850 taatgaaaaaccaagaccaaa 62830
>emb|BX000366.6| Zebrafish DNA sequence from clone CH211-204I4, complete sequence Length = 169542 Score = 42.1 bits (21), Expect = 7.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1263 aggacaccaacagaattgtgc 1283 ||||||||||||||||||||| Sbjct: 29815 aggacaccaacagaattgtgc 29795
>gb|AC161214.4| Mus musculus chromosome 8, clone RP23-78A10, complete sequence Length = 182742 Score = 42.1 bits (21), Expect = 7.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 328 ttcctgaatggcttgagtaatgaagtttt 356 |||||| |||||||||||||||| ||||| Sbjct: 40501 ttcctggatggcttgagtaatgatgtttt 40529 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 359,679,290 Number of extensions: 18659494 Number of successful extensions: 360671 Number of sequences better than 10.0: 63 Number of HSP's gapped: 360671 Number of HSP's successfully gapped: 88 Length of query: 1961 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1938 Effective length of database: 18,503,978,556 Effective search space: 35860710441528 Effective search space used: 35860710441528 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)