ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf11c05 |
|---|---|
| Clone Library Name | barley_pub |
>O24308:TOP2_PEA DNA topoisomerase 2 - Pisum sativum (Garden pea)| Length = 1462 Score = 49.7 bits (117), Expect = 1e-05 Identities = 26/52 (50%), Positives = 38/52 (73%) Frame = +1 Query: 97 QSKGMRQKVMEEIFKPTDDSNLSAPSPEKKVRRIRDSPFNKKSGSVLHRMAS 252 QS G QK++ ++ +P + + S PEKKVR++R+SPFNKKSGS+L R A+ Sbjct: 1344 QSAG--QKLLTDMLQPAEGTGTS---PEKKVRKMRESPFNKKSGSILGRAAA 1390
>P30182:TOP2_ARATH DNA topoisomerase 2 - Arabidopsis thaliana (Mouse-ear cress)| Length = 1473 Score = 45.4 bits (106), Expect = 2e-04 Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 7/68 (10%) Frame = +1 Query: 172 SPEKKVRRIRDSPFNKKSGSVLHRMA------STSTGVEDDEAPPSGSSAEPVA-PRRTT 330 SPEKKVR++R SPFNKKS SV+ R+A S+ + + SG ++ P+R Sbjct: 1383 SPEKKVRKMRSSPFNKKSSSVMSRLADNKEEESSENVAGNSSSEKSGGDVSAISRPQRAN 1442 Query: 331 RERKAAVV 354 R + V+ Sbjct: 1443 RRKMTYVL 1450
>Q9BTA9:WAC_HUMAN WW domain-containing adapter protein with coiled-coil - Homo| sapiens (Human) Length = 647 Score = 33.5 bits (75), Expect = 0.74 Identities = 20/59 (33%), Positives = 30/59 (50%) Frame = +1 Query: 142 PTDDSNLSAPSPEKKVRRIRDSPFNKKSGSVLHRMASTSTGVEDDEAPPSGSSAEPVAP 318 PT S++ A E+K D P S S S+++G+ APP+ +SA PV+P Sbjct: 292 PTPTSSVPAQKTERKESTSGDKPV---SHSCTTPSTSSASGLNPTSAPPTSASAVPVSP 347
>Q64298:MCSP_RAT Sperm mitochondrial-associated cysteine-rich protein - Rattus| norvegicus (Rat) Length = 145 Score = 32.0 bits (71), Expect = 2.1 Identities = 13/30 (43%), Positives = 16/30 (53%) Frame = +3 Query: 39 KTACCCEAKDCCHQEESASSEQRHEAESDG 128 K CC CC Q SSE + E++SDG Sbjct: 88 KKCTCCPQPTCCVQPTCCSSENKTESDSDG 117
>Q924H7:WAC_MOUSE WW domain-containing adapter protein with coiled-coil - Mus| musculus (Mouse) Length = 646 Score = 32.0 bits (71), Expect = 2.2 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Frame = +1 Query: 163 SAPSPEKKVRRIRDSPFNKK-SGSVLHRMASTSTGVEDDEAPPSGSSAEPVAP 318 +A P +K R +P +K S S S+++G+ APP+ +SA PV+P Sbjct: 295 TASLPAQKTERKESAPGDKSISHSCTTPSTSSASGLNPTSAPPTSASAVPVSP 347
>Q9ULV3:CIZ1_HUMAN Cip1-interacting zinc finger protein - Homo sapiens (Human)| Length = 898 Score = 32.0 bits (71), Expect = 2.2 Identities = 22/60 (36%), Positives = 28/60 (46%) Frame = +1 Query: 157 NLSAPSPEKKVRRIRDSPFNKKSGSVLHRMASTSTGVEDDEAPPSGSSAEPVAPRRTTRE 336 NLS +P+K+ R + N+K S S + VED PP GS E PR T E Sbjct: 175 NLSGRNPQKQARTSSSTTPNRKDSS------SQTMPVEDKSDPPEGSE-EAAEPRMDTPE 227
>P15265:MCSP_MOUSE Sperm mitochondrial-associated cysteine-rich protein - Mus musculus| (Mouse) Length = 143 Score = 31.2 bits (69), Expect = 3.6 Identities = 12/30 (40%), Positives = 17/30 (56%) Frame = +3 Query: 36 RKTACCCEAKDCCHQEESASSEQRHEAESD 125 +K CC + CC Q SSE + E++SD Sbjct: 84 KKCTCCPQPPPCCAQPTCCSSENKTESDSD 113
>Q9VDW6:DMDA_DROME Dystrophin, isoforms A/C/DLP1/DLP3 - Drosophila melanogaster (Fruit| fly) Length = 3497 Score = 31.2 bits (69), Expect = 3.7 Identities = 16/55 (29%), Positives = 33/55 (60%), Gaps = 4/55 (7%) Frame = +1 Query: 118 KVMEEIFKPTDDSNLSAPSP--EKKVRRIRD--SPFNKKSGSVLHRMASTSTGVE 270 KV+E + P DDSN++ SP E++ + + D F+K++ +++++ T +E Sbjct: 1982 KVLESLSSPVDDSNVTLKSPISEEQPQNLDDRVREFDKQAKQMIYKLKLTKAKIE 2036
>O96006:ZBED1_HUMAN Zinc finger BED domain-containing protein 1 - Homo sapiens (Human)| Length = 694 Score = 30.4 bits (67), Expect = 6.3 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%) Frame = +1 Query: 97 QSKGMRQKVMEEIFKPTDDSNLSAPS--PEKKVRRIRDSPFNKKSGSVLHRMASTSTGVE 270 ++KG+ KV + ++P +D P P KK+ R P ++L + + GVE Sbjct: 500 EAKGLLDKVKDGGYRPAEDKIFPVPEEPPVKKLMRTSTPPPASVINNMLAEIFCQTGGVE 559 Query: 271 DDE 279 D E Sbjct: 560 DQE 562
>Q68EY7:C124A_XENLA Coiled-coil domain-containing protein 124-A - Xenopus laevis| (African clawed frog) Length = 217 Score = 30.4 bits (67), Expect = 6.3 Identities = 18/78 (23%), Positives = 35/78 (44%) Frame = +1 Query: 100 SKGMRQKVMEEIFKPTDDSNLSAPSPEKKVRRIRDSPFNKKSGSVLHRMASTSTGVEDDE 279 S G RQK +E+ + DD +++ K+ + KK L R + +++++ Sbjct: 26 SDGKRQKEIEDAYWQDDDKHVARKGQRKEDK-------EKKRLEQLERKKESQRLLDEED 78 Query: 280 APPSGSSAEPVAPRRTTR 333 + +P AP + TR Sbjct: 79 SKMKAKPTKPAAPSKVTR 96
>Q14676:MDC1_HUMAN Mediator of DNA damage checkpoint protein 1 - Homo sapiens (Human)| Length = 2089 Score = 30.0 bits (66), Expect = 8.2 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 8/62 (12%) Frame = +1 Query: 172 SPEKKVRRIRDSPFNKKSGSVLHRMASTSTGVEDDEA--------PPSGSSAEPVAPRRT 327 +PE ++ D P K S R + + V++ E+ PPS S+ +PV P T Sbjct: 1329 APELQISTSTDQPVTPKPTSRTTRSRTNMSSVKNPESTVPIAPELPPSTSTEQPVTPEPT 1388 Query: 328 TR 333 +R Sbjct: 1389 SR 1390
>O70220:FOXQ1_MOUSE Forkhead box protein Q1 - Mus musculus (Mouse)| Length = 400 Score = 30.0 bits (66), Expect = 8.2 Identities = 16/67 (23%), Positives = 30/67 (44%) Frame = +1 Query: 118 KVMEEIFKPTDDSNLSAPSPEKKVRRIRDSPFNKKSGSVLHRMASTSTGVEDDEAPPSGS 297 KV+ + +P N +P + D F ++ + HR +++G+ +EAPP + Sbjct: 175 KVLRDPSRPWGKDNYWMLNPNSEYT-FADGVFRRRRKRLSHRTTVSASGLRPEEAPPGPA 233 Query: 298 SAEPVAP 318 AP Sbjct: 234 GTPQAAP 240 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 93,100,591 Number of extensions: 1709385 Number of successful extensions: 5403 Number of sequences better than 10.0: 12 Number of HSP's gapped: 5399 Number of HSP's successfully gapped: 12 Length of query: 223 Length of database: 100,686,439 Length adjustment: 109 Effective length of query: 114 Effective length of database: 70,788,284 Effective search space: 8069864376 Effective search space used: 8069864376 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
