| Clone Name | FLbaf11b12 |
|---|---|
| Clone Library Name | barley_pub |
>P36886:PSAK_HORVU Photosystem I reaction center subunit psaK, chloroplast precursor -| Hordeum vulgare (Barley) Length = 131 Score = 252 bits (643), Expect = 8e-67 Identities = 128/128 (100%), Positives = 128/128 (100%) Frame = +1 Query: 49 QLSAMTSVPQFHGLRTYSSPRSMATLPSLRRRRSQGIRCDYIGSSTNLIMVTTTTLMLFA 228 QLSAMTSVPQFHGLRTYSSPRSMATLPSLRRRRSQGIRCDYIGSSTNLIMVTTTTLMLFA Sbjct: 4 QLSAMTSVPQFHGLRTYSSPRSMATLPSLRRRRSQGIRCDYIGSSTNLIMVTTTTLMLFA 63 Query: 229 GRFGLAPSANRKATAGLKLEARESGLQTGDPAGFTLADTLACGAVGHIMGVGIVLGLKNT 408 GRFGLAPSANRKATAGLKLEARESGLQTGDPAGFTLADTLACGAVGHIMGVGIVLGLKNT Sbjct: 64 GRFGLAPSANRKATAGLKLEARESGLQTGDPAGFTLADTLACGAVGHIMGVGIVLGLKNT 123 Query: 409 GVLDQIIG 432 GVLDQIIG Sbjct: 124 GVLDQIIG 131
>Q9SUI5:PSAK_ARATH Photosystem I reaction center subunit psaK, chloroplast precursor -| Arabidopsis thaliana (Mouse-ear cress) Length = 130 Score = 171 bits (434), Expect = 1e-42 Identities = 87/125 (69%), Positives = 107/125 (85%), Gaps = 6/125 (4%) Frame = +1 Query: 61 MTSVPQFHGLR----TYSSPRSMATLPSLRRRRSQ--GIRCDYIGSSTNLIMVTTTTLML 222 MT++PQF+GLR + + + +A++ +RR+ + G +CD+IGSSTNLIMVT+TTLML Sbjct: 6 MTTLPQFNGLRATKISAAPVQGLASVQPMRRKGNGALGAKCDFIGSSTNLIMVTSTTLML 65 Query: 223 FAGRFGLAPSANRKATAGLKLEARESGLQTGDPAGFTLADTLACGAVGHIMGVGIVLGLK 402 FAGRFGLAPSANRKATAGL+LEAR+SGLQTGDPAGFTLADTLACG VGHI+GVG+VLGLK Sbjct: 66 FAGRFGLAPSANRKATAGLRLEARDSGLQTGDPAGFTLADTLACGTVGHIIGVGVVLGLK 125 Query: 403 NTGVL 417 N G + Sbjct: 126 NIGAI 130
>Q9ZT05:PSAK_MEDSA Photosystem I reaction center subunit psaK, chloroplast precursor -| Medicago sativa (Alfalfa) Length = 129 Score = 166 bits (419), Expect = 7e-41 Identities = 86/122 (70%), Positives = 99/122 (81%), Gaps = 6/122 (4%) Frame = +1 Query: 55 SAMTSVPQFHGLRTYSSPRSM----ATLPSLRRRR--SQGIRCDYIGSSTNLIMVTTTTL 216 S MT++PQF GLR P + A P RR+ + G+RCD+IGSSTN+IMV +TTL Sbjct: 4 SMMTTLPQFTGLRPQLKPSPIQGLVAAQPMTRRKGKGALGVRCDFIGSSTNVIMVASTTL 63 Query: 217 MLFAGRFGLAPSANRKATAGLKLEARESGLQTGDPAGFTLADTLACGAVGHIMGVGIVLG 396 MLFAGRFGLAPSANRKATAGLKLE R+SGLQTGDPAGFTLADTLACG VGHI+GVG+VLG Sbjct: 64 MLFAGRFGLAPSANRKATAGLKLETRDSGLQTGDPAGFTLADTLACGTVGHIIGVGVVLG 123 Query: 397 LK 402 L+ Sbjct: 124 LR 125
>P14225:PSAK_CHLRE Photosystem I reaction center subunit psaK, chloroplast precursor -| Chlamydomonas reinhardtii Length = 113 Score = 102 bits (255), Expect = 7e-22 Identities = 60/112 (53%), Positives = 73/112 (65%), Gaps = 9/112 (8%) Frame = +1 Query: 109 RSMATLPSL------RRRRSQGIRCD-YIGSSTNLIMVTTTTLMLFAGRFGLAPSANRKA 267 +++AT PS RR S +R D +IGSSTNLIMV +TT L A RFGLAP+ + Sbjct: 2 QALATRPSAIRPTKAARRSSVVVRADGFIGSSTNLIMVASTTATLAAARFGLAPTVKKNT 61 Query: 268 TAGLKL--EARESGLQTGDPAGFTLADTLACGAVGHIMGVGIVLGLKNTGVL 417 TAGLKL +G+ + DPAGFT+ D LA GA GH +GVGIVLGLK G L Sbjct: 62 TAGLKLVDSKNSAGVISNDPAGFTIVDVLAMGAAGHGLGVGIVLGLKGIGAL 113
>P42051:PSAK_CUCSA Photosystem I reaction center subunit psaK, chloroplast - Cucumis| sativus (Cucumber) Length = 33 Score = 57.4 bits (137), Expect = 4e-08 Identities = 27/32 (84%), Positives = 30/32 (93%) Frame = +1 Query: 166 DYIGSSTNLIMVTTTTLMLFAGRFGLAPSANR 261 DYIGS TN+IMV +T+LMLFAGRFGLAPSANR Sbjct: 2 DYIGSPTNVIMVISTSLMLFAGRFGLAPSANR 33
>P14627:PSAK_SPIOL Photosystem I reaction center subunit psaK, chloroplast - Spinacia| oleracea (Spinach) Length = 29 Score = 53.5 bits (127), Expect = 5e-07 Identities = 25/28 (89%), Positives = 27/28 (96%) Frame = +1 Query: 166 DYIGSSTNLIMVTTTTLMLFAGRFGLAP 249 D+IGSSTNLIMVT+TTLMLFAGRFGL P Sbjct: 2 DFIGSSTNLIMVTSTTLMLFAGRFGLXP 29
>Q9SPM4:PSAG_TORRU Photosystem I reaction center subunit V, chloroplast precursor -| Tortula ruralis (Star moss) (Twisted moss) Length = 112 Score = 46.6 bits (109), Expect = 6e-05 Identities = 36/99 (36%), Positives = 47/99 (47%), Gaps = 16/99 (16%) Frame = +1 Query: 157 IRCDYIGSSTNLIMVTTTTLMLFAGRF-------------GLAPSANRKATAGLKLEARE 297 + CD G++T+ I+ +T +L GRF GL P N T R Sbjct: 11 VTCD--GANTSFIISASTAALLALGRFVFLPFQRSMVSRHGL-PEQNGVPTTRRVTAVRR 67 Query: 298 ---SGLQTGDPAGFTLADTLACGAVGHIMGVGIVLGLKN 405 S L+T DPAGFTL D LA GA+GH +G I+ N Sbjct: 68 RWWSMLKTNDPAGFTLVDVLAWGALGHAVGFFILATATN 106
>Q9S7N7:PSAG_ARATH Photosystem I reaction center subunit V, chloroplast precursor -| Arabidopsis thaliana (Mouse-ear cress) Length = 160 Score = 45.4 bits (106), Expect = 1e-04 Identities = 39/128 (30%), Positives = 57/128 (44%), Gaps = 19/128 (14%) Frame = +1 Query: 79 FHGLRTYSSPRSMATLPSL----RRRRSQGIRCDYIGSSTNLIMVTTTTLMLFAGRF--- 237 FHGLR S + LP L R+ S +R + S ++++ +T L LF GRF Sbjct: 28 FHGLRPLRLGGSSSALPKLSTTGRKSSSAVVRAEL---SPSIVISLSTGLSLFLGRFVFF 84 Query: 238 ----------GLAPSANRKATAGLKLEARE--SGLQTGDPAGFTLADTLACGAVGHIMGV 381 GL + A+E S L++ DP GF + D LA G++GHI+ Sbjct: 85 NFQRENVAKQGLPEQNGKTHFEAGDDRAKEYVSLLKSNDPIGFNIVDVLAWGSIGHIVAY 144 Query: 382 GIVLGLKN 405 I+ N Sbjct: 145 YILATSSN 152
>Q00327:PSAG_HORVU Photosystem I reaction center subunit V, chloroplast precursor -| Hordeum vulgare (Barley) Length = 143 Score = 44.7 bits (104), Expect = 2e-04 Identities = 41/133 (30%), Positives = 59/133 (44%), Gaps = 16/133 (12%) Frame = +1 Query: 55 SAMTSVPQFHGLRTYSSPRSMATLPSLR--RRRSQGIRCDYIGSSTNLIMVTTTTLMLFA 228 +A+ S P GLR SPR+ A+ + RRS R ++++ +T L L Sbjct: 6 AAVLSPPAVAGLRLAPSPRAAASFRGVSPPARRSVAARA---ALEPSVVISLSTGLSLVM 62 Query: 229 GRFGL-----------APSANRKA--TAGLKLEARESG-LQTGDPAGFTLADTLACGAVG 366 GRF P N K AG + +G L++ DP GF L D LA G++G Sbjct: 63 GRFVFFNFQRENVAKQVPEQNGKTHFEAGDERAKEFAGILKSNDPVGFNLVDVLAWGSIG 122 Query: 367 HIMGVGIVLGLKN 405 HI+ I+ N Sbjct: 123 HIVAYYILATTSN 135
>P12357:PSAG_SPIOL Photosystem I reaction center subunit V, chloroplast precursor -| Spinacia oleracea (Spinach) Length = 167 Score = 43.5 bits (101), Expect = 5e-04 Identities = 38/127 (29%), Positives = 55/127 (43%), Gaps = 18/127 (14%) Frame = +1 Query: 79 FHGLR----TYSSPRSMATLPSLRRRRSQGIRCDYIGSSTNLIMVTTTTLMLFAGRFGL- 243 F GLR SS S ++L RRS R + S +L++ +T L LF GRF Sbjct: 37 FSGLRPLKLNISSNNSSSSLSMSSARRSMTCRAEL---SPSLVISLSTGLSLFLGRFVFF 93 Query: 244 ----------APSANRKA---TAGLKLEARESGLQTGDPAGFTLADTLACGAVGHIMGVG 384 P N + + + S L++ DP GF + D LA G++GHI+ Sbjct: 94 NFQRENMAKQVPEQNGMSHFEAGDTRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYY 153 Query: 385 IVLGLKN 405 I+ N Sbjct: 154 ILATASN 160
>Q1XDB7:PSAK_PORYE Photosystem I reaction center subunit psaK - Porphyra yezoensis| Length = 86 Score = 40.0 bits (92), Expect = 0.006 Identities = 23/76 (30%), Positives = 39/76 (51%) Frame = +1 Query: 190 LIMVTTTTLMLFAGRFGLAPSANRKATAGLKLEARESGLQTGDPAGFTLADTLACGAVGH 369 ++M+T L + AGR+ + GL SG++ GF L + LA ++GH Sbjct: 22 MVMITCNLLAIVAGRYAIK-------VRGLGPSIPVSGVE-----GFGLPELLATTSLGH 69 Query: 370 IMGVGIVLGLKNTGVL 417 ++G +LGL N G++ Sbjct: 70 VIGAASILGLSNVGLI 85
>P51370:PSAK_PORPU Photosystem I reaction center subunit psaK - Porphyra purpurea| Length = 86 Score = 40.0 bits (92), Expect = 0.006 Identities = 23/76 (30%), Positives = 39/76 (51%) Frame = +1 Query: 190 LIMVTTTTLMLFAGRFGLAPSANRKATAGLKLEARESGLQTGDPAGFTLADTLACGAVGH 369 ++M+T L + AGR+ + GL SG++ GF L + LA ++GH Sbjct: 22 MVMITCNLLAIVAGRYAIK-------VRGLGPSIPVSGVE-----GFGLPELLATTSLGH 69 Query: 370 IMGVGIVLGLKNTGVL 417 ++G +LGL N G++ Sbjct: 70 VIGAASILGLSNVGLI 85
>P72712:PSAK1_SYNY3 Photosystem I reaction center subunit psaK 1 precursor -| Synechocystis sp. (strain PCC 6803) Length = 86 Score = 40.0 bits (92), Expect = 0.006 Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 5/65 (7%) Frame = +1 Query: 238 GLAPSANRKATAGLKLEARESGLQTGDPA-----GFTLADTLACGAVGHIMGVGIVLGLK 402 G+ + N A A KL ++ + T P+ GF L L + GHI+G G++LGL Sbjct: 22 GVMIACNILAIAFGKLTIKQQNVGTPMPSSNFFGGFGLGAVLGTASFGHILGAGVILGLA 81 Query: 403 NTGVL 417 N GVL Sbjct: 82 NMGVL 86
>P74564:PSAK2_SYNY3 Photosystem I reaction center subunit psaK 2 precursor -| Synechocystis sp. (strain PCC 6803) Length = 90 Score = 36.6 bits (83), Expect = 0.065 Identities = 23/79 (29%), Positives = 38/79 (48%) Frame = +1 Query: 181 STNLIMVTTTTLMLFAGRFGLAPSANRKATAGLKLEARESGLQTGDPAGFTLADTLACGA 360 S +IM G F + + K A +L ++++ F L + LA + Sbjct: 21 SVGIIMCLCNVFAFVIGYFAIQKTGKGKDLALPQLASKKT---------FGLPELLATMS 71 Query: 361 VGHIMGVGIVLGLKNTGVL 417 GHI+G G+VLGL ++G+L Sbjct: 72 FGHILGAGMVLGLASSGIL 90
>P17226:PSAK_PEA Photosystem I reaction center subunit psaK, chloroplast - Pisum| sativum (Garden pea) Length = 20 Score = 36.2 bits (82), Expect = 0.085 Identities = 16/20 (80%), Positives = 19/20 (95%) Frame = +1 Query: 166 DYIGSSTNLIMVTTTTLMLF 225 D+IGSSTN+IMV +TTLMLF Sbjct: 1 DFIGSSTNVIMVASTTLMLF 20
>Q6B8M4:PSAK_GRATL Photosystem I reaction center subunit psaK - Gracilaria| tenuistipitata var. liui (Red alga) Length = 86 Score = 36.2 bits (82), Expect = 0.085 Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 5/85 (5%) Frame = +1 Query: 181 STNLIMVTTTTLMLFAGRF-----GLAPSANRKATAGLKLEARESGLQTGDPAGFTLADT 345 ST +IMV L + GR+ GL PS GLK GF L + Sbjct: 19 STAIIMVICNLLCIGLGRYAIQVRGLGPSI---PALGLK--------------GFGLPEL 61 Query: 346 LACGAVGHIMGVGIVLGLKNTGVLD 420 LA ++GHI+G G ++GL + +++ Sbjct: 62 LATTSLGHIIGAGAIIGLNSIKIIN 86
>Q9S3W9:PSAK_MASLA Photosystem I reaction center subunit psaK precursor -| Mastigocladus laminosus (Fischerella sp.) Length = 86 Score = 35.4 bits (80), Expect = 0.14 Identities = 16/29 (55%), Positives = 19/29 (65%) Frame = +1 Query: 325 GFTLADTLACGAVGHIMGVGIVLGLKNTG 411 GF L LA A GHI+G G++LGL N G Sbjct: 56 GFGLPALLATTAFGHILGTGVILGLHNLG 84
>P23317:PSAK_ANAVT Photosystem I reaction center subunit psaK precursor - Anabaena| variabilis (strain ATCC 29413 / PCC 7937) Length = 86 Score = 35.4 bits (80), Expect = 0.14 Identities = 17/29 (58%), Positives = 19/29 (65%) Frame = +1 Query: 325 GFTLADTLACGAVGHIMGVGIVLGLKNTG 411 GF LA A GHI+GVGI+LGL N G Sbjct: 56 GFGAPALLATTAFGHILGVGIILGLHNLG 84
>P14224:PSAG_CHLRE Photosystem I reaction center subunit V, chloroplast precursor -| Chlamydomonas reinhardtii Length = 126 Score = 35.4 bits (80), Expect = 0.14 Identities = 30/114 (26%), Positives = 47/114 (41%), Gaps = 20/114 (17%) Frame = +1 Query: 109 RSMATLPSLR-------RRRSQGIRCDYIGSSTNLIMVTTTTLMLFAGRFGLAPSANRKA 267 +++A+ PSLR RR + +++ +T L GRF R+A Sbjct: 2 QTLASRPSLRASARVAPRRAPRVAVVTKAALDPQIVISGSTAAFLAIGRFVFLGYQRREA 61 Query: 268 ----TAGLK---------LEARESGLQTGDPAGFTLADTLACGAVGHIMGVGIV 390 T G K L+ + T DPAGF + D GA+GH +G ++ Sbjct: 62 NFDSTVGPKTTGATYFDDLQKNSTIFATNDPAGFNIIDVAGWGALGHAVGFAVL 115
>Q9JKS4:LDB3_MOUSE LIM domain-binding protein 3 - Mus musculus (Mouse)| Length = 723 Score = 35.4 bits (80), Expect = 0.14 Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 6/61 (9%) Frame = -1 Query: 353 HASVSASVKPAGSPVCSPDSRASSLSPAVAFLFADGA------SPNRPAKSIRVVVVTMM 192 HA+ +++ PA SPV +P +AS+ SPA A A A P PA RVV + Sbjct: 340 HAAAASAAGPAASPVENPRPQASAYSPAAAASPAPSAHTSYSEGPAAPAPKPRVVTTASI 399 Query: 191 R 189 R Sbjct: 400 R 400
>P58583:PSAK1_ANASP Photosystem I reaction center subunit psaK 1 precursor - Anabaena| sp. (strain PCC 7120) Length = 86 Score = 35.0 bits (79), Expect = 0.19 Identities = 17/29 (58%), Positives = 19/29 (65%) Frame = +1 Query: 325 GFTLADTLACGAVGHIMGVGIVLGLKNTG 411 GF LA A GHI+GVG+VLGL N G Sbjct: 56 GFGAPALLATTAFGHILGVGLVLGLHNLG 84
>P31567:PSAK_GALSU Photosystem I reaction center subunit psaK - Galdieria sulphuraria| (Red alga) Length = 69 Score = 34.7 bits (78), Expect = 0.25 Identities = 21/82 (25%), Positives = 36/82 (43%) Frame = +1 Query: 172 IGSSTNLIMVTTTTLMLFAGRFGLAPSANRKATAGLKLEARESGLQTGDPAGFTLADTLA 351 I STN+I + T+ + G++ + N + A LA+ LA Sbjct: 3 IAVSTNIIFIVVNTICVILGKYSVQNKKNESYSI----------------ANINLAELLA 46 Query: 352 CGAVGHIMGVGIVLGLKNTGVL 417 ++GHI+ VLGLK+ ++ Sbjct: 47 SMSLGHIISSATVLGLKSLNLI 68
>O19902:PSAK_CYACA Photosystem I reaction center subunit psaK - Cyanidium caldarium| Length = 84 Score = 33.9 bits (76), Expect = 0.42 Identities = 23/75 (30%), Positives = 38/75 (50%) Frame = +1 Query: 178 SSTNLIMVTTTTLMLFAGRFGLAPSANRKATAGLKLEARESGLQTGDPAGFTLADTLACG 357 SS ++IM+ + + + GR+ + GLK S L+ F + + LA Sbjct: 15 SSISIIMILSNIMAIVVGRYSIK-------VRGLKPPIAISQLKD-----FGVPELLATM 62 Query: 358 AVGHIMGVGIVLGLK 402 ++GHI+GVG +GLK Sbjct: 63 SLGHIIGVGSTIGLK 77
>O75112:LDB3_HUMAN LIM domain-binding protein 3 - Homo sapiens (Human)| Length = 727 Score = 32.7 bits (73), Expect = 0.94 Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 6/57 (10%) Frame = -1 Query: 341 SASVKPAGSPVCSPDSRASSLSPAVAFLFADGA------SPNRPAKSIRVVVVTMMR 189 +++ PA SP SP +ASS SPAVA A P PA RVV +R Sbjct: 348 ASTTAPASSPADSPRPQASSYSPAVAASSAPATHTSYSEGPAAPAPKPRVVTTASIR 404
>O78444:PSAK_GUITH Photosystem I reaction center subunit psaK - Guillardia theta| (Cryptomonas phi) Length = 87 Score = 31.6 bits (70), Expect = 2.1 Identities = 22/80 (27%), Positives = 38/80 (47%) Frame = +1 Query: 178 SSTNLIMVTTTTLMLFAGRFGLAPSANRKATAGLKLEARESGLQTGDPAGFTLADTLACG 357 + T+ IM+ L + + R+ + N+ L L +G + F L + LA Sbjct: 18 AKTSSIMILCNVLCIVSARYIIQ---NKNKGTALPL--------SGSFSTFGLPELLATT 66 Query: 358 AVGHIMGVGIVLGLKNTGVL 417 ++GHI+G G +LG G+L Sbjct: 67 SLGHIIGSGTILGFSYIGLL 86
>Q8YLK8:PSAK2_ANASP Photosystem I reaction center subunit psaK 2 precursor - Anabaena| sp. (strain PCC 7120) Length = 92 Score = 31.6 bits (70), Expect = 2.1 Identities = 15/29 (51%), Positives = 20/29 (68%) Frame = +1 Query: 331 TLADTLACGAVGHIMGVGIVLGLKNTGVL 417 ++A LA + GHI+GV VLGL N GV+ Sbjct: 64 SVATFLAAMSFGHIIGVAAVLGLTNLGVI 92
>P0A426:PSAK_SYNEN Photosystem I reaction center subunit psaK precursor -| Synechococcus elongatus naegeli Length = 83 Score = 31.2 bits (69), Expect = 2.7 Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 3/82 (3%) Frame = +1 Query: 181 STNLIMVTTTTLMLFAGRFGLAPSANRKATAGLKLEARESGLQTGDPA---GFTLADTLA 351 S L+++ + GR+ + + + GL PA GF L + LA Sbjct: 14 SVGLVVILCNLFAIALGRYAI------------QSRGKGPGLPIALPALFEGFGLPELLA 61 Query: 352 CGAVGHIMGVGIVLGLKNTGVL 417 + GH++ G+V GL+ G L Sbjct: 62 TTSFGHLLAAGVVSGLQYAGAL 83
>P0A425:PSAK_SYNEL Photosystem I reaction center subunit psaK precursor -| Synechococcus elongatus (Thermosynechococcus elongatus) Length = 83 Score = 31.2 bits (69), Expect = 2.7 Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 3/82 (3%) Frame = +1 Query: 181 STNLIMVTTTTLMLFAGRFGLAPSANRKATAGLKLEARESGLQTGDPA---GFTLADTLA 351 S L+++ + GR+ + + + GL PA GF L + LA Sbjct: 14 SVGLVVILCNLFAIALGRYAI------------QSRGKGPGLPIALPALFEGFGLPELLA 61 Query: 352 CGAVGHIMGVGIVLGLKNTGVL 417 + GH++ G+V GL+ G L Sbjct: 62 TTSFGHLLAAGVVSGLQYAGAL 83 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 65,023,561 Number of extensions: 1249157 Number of successful extensions: 4006 Number of sequences better than 10.0: 28 Number of HSP's gapped: 4000 Number of HSP's successfully gapped: 28 Length of query: 191 Length of database: 100,686,439 Length adjustment: 107 Effective length of query: 84 Effective length of database: 71,336,874 Effective search space: 5992297416 Effective search space used: 5992297416 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)