ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf5j24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Q08354:EZY1_CHLRE Ezy-1 protein precursor - Chlamydomonas reinha... 33 2.0
2Q9C615:SYP24_ARATH Putative syntaxin-24 - Arabidopsis thaliana (... 32 5.8

>Q08354:EZY1_CHLRE Ezy-1 protein precursor - Chlamydomonas reinhardtii|
          Length = 453
 Score = 33.1 bits (74), Expect = 2.0
 Identities = 19/49 (38%), Positives = 21/49 (42%)
 Frame = -2

Query: 584 DLEDEVPGLDVLGERIGEVGREGDAGAGEHRGPDLHVAVALVDRRERGG 438
           D  D++PGL        E G EGD G GE  G    V    VD    GG
Sbjct: 259 DFLDKMPGLKAAFTGKAEPGAEGDDGEGEEEGEAQDVGEDAVDSSSSGG 307



to top

>Q9C615:SYP24_ARATH Putative syntaxin-24 - Arabidopsis thaliana (Mouse-ear cress)|
          Length = 416

 Score = 31.6 bits (70), Expect = 5.8
 Identities = 21/89 (23%), Positives = 40/89 (44%)
 Frame = +3

Query: 249 RFYLQDASLRQLDVLTANASAAAGVLSTVLQVTVASRNPNDRVGVYYDRLDVYASYKYQQ 428
           +F + DA L   D+ + N       L   L + ++ RN    +G++YDR +    Y  Q+
Sbjct: 8   KFQVYDAELTHFDLESNNN------LQYSLSLNLSIRNSKSSIGIHYDRFEATVYYMNQR 61

Query: 429 ITLASALPPVYQGHGDVEVWSPVLSGPSV 515
           +  A  +P  Y G  +  +   +  G ++
Sbjct: 62  LG-AVPMPLFYLGSKNTMLLRALFEGQTL 89


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 105,619,070
Number of extensions: 1836124
Number of successful extensions: 5604
Number of sequences better than 10.0: 2
Number of HSP's gapped: 5602
Number of HSP's successfully gapped: 2
Length of query: 357
Length of database: 100,686,439
Length adjustment: 114
Effective length of query: 243
Effective length of database: 69,416,809
Effective search space: 16868284587
Effective search space used: 16868284587
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top