ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf5i09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Q9LST7:PSB3_ORYSJ Proteasome subunit beta type 3 - Oryza sativa ... 46 1e-04
2O65084:PSB3_PICMA Proteasome subunit beta type 3 - Picea mariana... 46 2e-04
3O81153:PSB3B_ARATH Proteasome subunit beta type 3-B - Arabidopsi... 40 0.013
4Q9XI05:PSB3A_ARATH Proteasome subunit beta type 3-A - Arabidopsi... 40 0.013

>Q9LST7:PSB3_ORYSJ Proteasome subunit beta type 3 - Oryza sativa subsp. japonica|
           (Rice)
          Length = 204
 Score = 46.2 bits (108), Expect = 1e-04
 Identities = 21/30 (70%), Positives = 26/30 (86%)
 Frame = +2

Query: 203 SPRRLGV*LRTLSVDFERAFKIHDKLHIGL 292
           S RRLGV L+T++ DF+R FKIHDKL+IGL
Sbjct: 24  SDRRLGVQLQTVATDFQRVFKIHDKLYIGL 53



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>O65084:PSB3_PICMA Proteasome subunit beta type 3 - Picea mariana (Black spruce)|
          Length = 204

 Score = 45.8 bits (107), Expect = 2e-04
 Identities = 20/30 (66%), Positives = 26/30 (86%)
 Frame = +2

Query: 203 SPRRLGV*LRTLSVDFERAFKIHDKLHIGL 292
           S RRLGV L+T++ DF+R FKIHDKL++GL
Sbjct: 24  SDRRLGVQLQTIATDFQRIFKIHDKLYVGL 53



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>O81153:PSB3B_ARATH Proteasome subunit beta type 3-B - Arabidopsis thaliana (Mouse-ear|
           cress)
          Length = 204

 Score = 39.7 bits (91), Expect = 0.013
 Identities = 19/30 (63%), Positives = 23/30 (76%)
 Frame = +2

Query: 203 SPRRLGV*LRTLSVDFERAFKIHDKLHIGL 292
           S RRLGV L+T++ DF+R  KIHD L IGL
Sbjct: 24  SDRRLGVQLQTIATDFQRISKIHDHLFIGL 53



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>Q9XI05:PSB3A_ARATH Proteasome subunit beta type 3-A - Arabidopsis thaliana (Mouse-ear|
           cress)
          Length = 204

 Score = 39.7 bits (91), Expect = 0.013
 Identities = 18/30 (60%), Positives = 24/30 (80%)
 Frame = +2

Query: 203 SPRRLGV*LRTLSVDFERAFKIHDKLHIGL 292
           S RRLGV L+T++ DF+R  KIHD++ IGL
Sbjct: 24  SDRRLGVQLQTIATDFQRISKIHDRVFIGL 53


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 128,775,475
Number of extensions: 2739726
Number of successful extensions: 7215
Number of sequences better than 10.0: 4
Number of HSP's gapped: 7213
Number of HSP's successfully gapped: 4
Length of query: 260
Length of database: 100,686,439
Length adjustment: 111
Effective length of query: 149
Effective length of database: 70,239,694
Effective search space: 10465714406
Effective search space used: 10465714406
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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