ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf5i09 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DQ245615.1| Zea mays clone 18315 mRNA sequence Length = 665 Score = 61.9 bits (31), Expect = 3e-06 Identities = 37/39 (94%) Strand = Plus / Plus Query: 446 cgccgccgcctccctgcgctctttgccgccgccgtcgcc 484 ||||||||||||||||| |||||||||||||||| |||| Sbjct: 14 cgccgccgcctccctgccctctttgccgccgccgccgcc 52 Score = 44.1 bits (22), Expect = 0.74 Identities = 34/38 (89%) Strand = Plus / Plus Query: 470 gccgccgccgtcgcccattgccgtggacgcctcctcct 507 |||||||||| ||||| ||| || |||||||||||||| Sbjct: 47 gccgccgccgccgcccgttgtcgcggacgcctcctcct 84
>dbj|AK242205.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J075169L17, full insert sequence Length = 878 Score = 56.0 bits (28), Expect = 2e-04 Identities = 43/48 (89%) Strand = Plus / Plus Query: 244 cgacttcgagagggccttcaagatccacgacaagctacacatcggcct 291 ||||||| |||||| |||||||||||||||||||| |||||||||| Sbjct: 219 cgacttccagagggtgttcaagatccacgacaagctctacatcggcct 266
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 56.0 bits (28), Expect = 2e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 244 cgacttcgagagggccttcaagatccacgacaagctacacatcggcct 291 ||||||| |||||| |||||||||||||||||||| |||||||||| Sbjct: 4601060 cgacttccagagggtgttcaagatccacgacaagctctacatcggcct 4601013
>dbj|AP004087.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1297_C09 Length = 163378 Score = 56.0 bits (28), Expect = 2e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 244 cgacttcgagagggccttcaagatccacgacaagctacacatcggcct 291 ||||||| |||||| |||||||||||||||||||| |||||||||| Sbjct: 136439 cgacttccagagggtgttcaagatccacgacaagctctacatcggcct 136392
>emb|CT832416.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA003B09, full insert sequence Length = 976 Score = 54.0 bits (27), Expect = 8e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 245 gacttcgagagggccttcaagatccacgacaagctacacatcggcct 291 |||||| |||||| |||||||||||||||||||| |||||||||| Sbjct: 196 gacttccagagggtgttcaagatccacgacaagctctacatcggcct 242
>ref|NM_001064711.1| Oryza sativa (japonica cultivar-group) Os06g0643100 (Os06g0643100) mRNA, complete cds Length = 1038 Score = 54.0 bits (27), Expect = 8e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 245 gacttcgagagggccttcaagatccacgacaagctacacatcggcct 291 |||||| |||||| |||||||||||||||||||| |||||||||| Sbjct: 205 gacttccagagggtgttcaagatccacgacaagctctacatcggcct 251
>gb|BT018301.1| Zea mays clone EL01T0206D12.c mRNA sequence Length = 1117 Score = 54.0 bits (27), Expect = 8e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 245 gacttcgagagggccttcaagatccacgacaagctacacatcggcct 291 |||||| |||||| |||||||||||||||||||| |||||||||| Sbjct: 348 gacttccagagggtgttcaagatccacgacaagctctacatcggcct 394
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6 Length = 30731886 Score = 54.0 bits (27), Expect = 8e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 245 gacttcgagagggccttcaagatccacgacaagctacacatcggcct 291 |||||| |||||| |||||||||||||||||||| |||||||||| Sbjct: 25818847 gacttccagagggtgttcaagatccacgacaagctctacatcggcct 25818801
>dbj|AP003523.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0416A11 Length = 171519 Score = 54.0 bits (27), Expect = 8e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 245 gacttcgagagggccttcaagatccacgacaagctacacatcggcct 291 |||||| |||||| |||||||||||||||||||| |||||||||| Sbjct: 101051 gacttccagagggtgttcaagatccacgacaagctctacatcggcct 101005
>dbj|AK070915.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023064O06, full insert sequence Length = 1040 Score = 54.0 bits (27), Expect = 8e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 245 gacttcgagagggccttcaagatccacgacaagctacacatcggcct 291 |||||| |||||| |||||||||||||||||||| |||||||||| Sbjct: 207 gacttccagagggtgttcaagatccacgacaagctctacatcggcct 253
>gb|AY104986.1| Zea mays PCO060249 mRNA sequence Length = 1122 Score = 54.0 bits (27), Expect = 8e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 245 gacttcgagagggccttcaagatccacgacaagctacacatcggcct 291 |||||| |||||| |||||||||||||||||||| |||||||||| Sbjct: 327 gacttccagagggtgttcaagatccacgacaagctctacatcggcct 373
>dbj|AB026565.1| Oryza sativa (japonica cultivar-group) OsPBC1 mRNA for beta 3 subunit of 20S proteasome, complete cds Length = 929 Score = 54.0 bits (27), Expect = 8e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 245 gacttcgagagggccttcaagatccacgacaagctacacatcggcct 291 |||||| |||||| |||||||||||||||||||| |||||||||| Sbjct: 209 gacttccagagggtgttcaagatccacgacaagctctacatcggcct 255
>emb|CT025888.9| Zebrafish DNA sequence from clone CH211-276C1 in linkage group 18, complete sequence Length = 134613 Score = 52.0 bits (26), Expect = 0.003 Identities = 26/26 (100%) Strand = Plus / Minus Query: 725 ttgtaaattattttatttttgtacat 750 |||||||||||||||||||||||||| Sbjct: 97724 ttgtaaattattttatttttgtacat 97699
>emb|BX936376.6| Zebrafish DNA sequence from clone CH211-82K12 in linkage group 18, complete sequence Length = 107736 Score = 52.0 bits (26), Expect = 0.003 Identities = 26/26 (100%) Strand = Plus / Plus Query: 725 ttgtaaattattttatttttgtacat 750 |||||||||||||||||||||||||| Sbjct: 11331 ttgtaaattattttatttttgtacat 11356
>emb|CR854824.7| Zebrafish DNA sequence from clone CH211-161C3 in linkage group 6, complete sequence Length = 122862 Score = 48.1 bits (24), Expect = 0.048 Identities = 24/24 (100%) Strand = Plus / Plus Query: 735 ttttatttttgtacataaataatt 758 |||||||||||||||||||||||| Sbjct: 113955 ttttatttttgtacataaataatt 113978
>emb|CT830889.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA017E11, full insert sequence Length = 625 Score = 48.1 bits (24), Expect = 0.048 Identities = 36/39 (92%), Gaps = 2/39 (5%) Strand = Plus / Plus Query: 446 cgccgccgcctccctgcgctctttgccgccgccgtcgcc 484 ||||||||||||||| ||||| |||||||||||||||| Sbjct: 12 cgccgccgcctccct--gctctctgccgccgccgtcgcc 48
>ref|XM_855868.1| PREDICTED: Canis familiaris similar to Kinesin-like protein KIF3A (Microtubule plus end-directed kinesin motor 3A), transcript variant 8 (LOC474675), mRNA Length = 2381 Score = 46.1 bits (23), Expect = 0.19 Identities = 26/27 (96%) Strand = Plus / Plus Query: 544 agagggggttgatgaagagggtgagaa 570 |||||||| |||||||||||||||||| Sbjct: 1275 agagggggatgatgaagagggtgagaa 1301
>dbj|AK086388.1| Mus musculus 15 days embryo head cDNA, RIKEN full-length enriched library, clone:D930025A01 product:unclassifiable, full insert sequence Length = 3601 Score = 46.1 bits (23), Expect = 0.19 Identities = 23/23 (100%) Strand = Plus / Minus Query: 729 aaattattttatttttgtacata 751 ||||||||||||||||||||||| Sbjct: 885 aaattattttatttttgtacata 863
>gb|AC154797.2| Mus musculus BAC clone RP24-494B10 from chromosome 17, complete sequence Length = 140053 Score = 46.1 bits (23), Expect = 0.19 Identities = 23/23 (100%) Strand = Plus / Minus Query: 728 taaattattttatttttgtacat 750 ||||||||||||||||||||||| Sbjct: 127103 taaattattttatttttgtacat 127081
>gb|AC186136.3| Medicago truncatula chromosome 7 BAC clone mth2-5a14, complete sequence Length = 115769 Score = 44.1 bits (22), Expect = 0.74 Identities = 22/22 (100%) Strand = Plus / Minus Query: 35 ccaactccatgttcttccccca 56 |||||||||||||||||||||| Sbjct: 34395 ccaactccatgttcttccccca 34374
>ref|NM_001058753.1| Oryza sativa (japonica cultivar-group) Os04g0196600 (Os04g0196600) mRNA, complete cds Length = 1765 Score = 44.1 bits (22), Expect = 0.74 Identities = 22/22 (100%) Strand = Plus / Minus Query: 445 gcgccgccgcctccctgcgctc 466 |||||||||||||||||||||| Sbjct: 614 gcgccgccgcctccctgcgctc 593
>gb|DQ366251.1| Diploschistes ocellatus translation elongation factor 1-alpha gene, partial cds Length = 727 Score = 44.1 bits (22), Expect = 0.74 Identities = 25/26 (96%) Strand = Plus / Plus Query: 607 cccttcgggacgtctacaagattggt 632 |||||| ||||||||||||||||||| Sbjct: 655 cccttcaggacgtctacaagattggt 680
>ref|NM_198807.1| Danio rerio zgc:56161 (zgc:56161), mRNA gb|BC045956.1| Danio rerio zgc:56161, mRNA (cDNA clone MGC:56161 IMAGE:5412774), complete cds Length = 2483 Score = 44.1 bits (22), Expect = 0.74 Identities = 25/26 (96%) Strand = Plus / Plus Query: 728 taaattattttatttttgtacataaa 753 |||||||||||| ||||||||||||| Sbjct: 2435 taaattattttagttttgtacataaa 2460
>gb|AC113506.12| Mus musculus chromosome 9, clone RP23-373O2, complete sequence Length = 171170 Score = 44.1 bits (22), Expect = 0.74 Identities = 22/22 (100%) Strand = Plus / Minus Query: 723 cattgtaaattattttattttt 744 |||||||||||||||||||||| Sbjct: 46685 cattgtaaattattttattttt 46664
>gb|AC159144.4| Medicago truncatula chromosome 7 BAC clone mth2-41a4, complete sequence Length = 55550 Score = 44.1 bits (22), Expect = 0.74 Identities = 22/22 (100%) Strand = Plus / Plus Query: 732 ttattttatttttgtacataaa 753 |||||||||||||||||||||| Sbjct: 35652 ttattttatttttgtacataaa 35673
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 44.1 bits (22), Expect = 0.74 Identities = 22/22 (100%) Strand = Plus / Plus Query: 445 gcgccgccgcctccctgcgctc 466 |||||||||||||||||||||| Sbjct: 6559192 gcgccgccgcctccctgcgctc 6559213
>emb|AL607008.2|OSJN00119 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0026E15, complete sequence Length = 137874 Score = 44.1 bits (22), Expect = 0.74 Identities = 22/22 (100%) Strand = Plus / Plus Query: 445 gcgccgccgcctccctgcgctc 466 |||||||||||||||||||||| Sbjct: 113440 gcgccgccgcctccctgcgctc 113461
>dbj|AK121999.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033110G11, full insert sequence Length = 1768 Score = 44.1 bits (22), Expect = 0.74 Identities = 22/22 (100%) Strand = Plus / Minus Query: 445 gcgccgccgcctccctgcgctc 466 |||||||||||||||||||||| Sbjct: 615 gcgccgccgcctccctgcgctc 594
>ref|XM_675071.1| Plasmodium berghei strain ANKA hypothetical protein (PB001046.02.0) partial mRNA Length = 3519 Score = 44.1 bits (22), Expect = 0.74 Identities = 22/22 (100%) Strand = Plus / Plus Query: 723 cattgtaaattattttattttt 744 |||||||||||||||||||||| Sbjct: 2049 cattgtaaattattttattttt 2070
>ref|XM_724229.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY01543) partial mRNA Length = 5331 Score = 44.1 bits (22), Expect = 0.74 Identities = 22/22 (100%) Strand = Plus / Plus Query: 723 cattgtaaattattttattttt 744 |||||||||||||||||||||| Sbjct: 1149 cattgtaaattattttattttt 1170
>gb|DQ021452.1| Penaeus monodon elongation factor-1 alpha mRNA, partial cds Length = 615 Score = 42.1 bits (21), Expect = 2.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 607 cccttcgggacgtctacaagattgg 631 |||||| |||||||||||||||||| Sbjct: 71 cccttcaggacgtctacaagattgg 95
>gb|DQ904452.1| Bacteriophage RB32, complete genome Length = 165890 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 687 ataaacgatattattatattt 707 ||||||||||||||||||||| Sbjct: 104457 ataaacgatattattatattt 104437
>gb|DQ677913.1| Ascochyta pisi isolate AFTOL-ID #1583 elongation factor-1 alpha (EF1a) gene, partial sequence Length = 889 Score = 42.1 bits (21), Expect = 2.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 607 cccttcgggacgtctacaagattgg 631 |||||| |||||||||||||||||| Sbjct: 363 cccttcaggacgtctacaagattgg 387
>gb|DQ217510.1| Elaeodendron curtipendulum 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 26S ribosomal RNA gene, partial sequence Length = 674 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 108 cccacagcccctcgcctcaga 128 ||||||||||||||||||||| Sbjct: 112 cccacagcccctcgcctcaga 92
>gb|DQ437593.1| Cowpox virus strain Germany 91-3, complete genome Length = 228250 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 736 tttatttttgtacataaataa 756 ||||||||||||||||||||| Sbjct: 160073 tttatttttgtacataaataa 160093
>gb|AC186558.1| Gasterosteus aculeatus clone VMRC26-150D01, complete sequence Length = 166468 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 734 attttatttttgtacataaat 754 ||||||||||||||||||||| Sbjct: 155795 attttatttttgtacataaat 155815
>gb|AC145222.18| Medicago truncatula clone mth2-29a15, complete sequence Length = 134651 Score = 42.1 bits (21), Expect = 2.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 734 attttatttttgtacataaataatt 758 |||||||||||||||||||| |||| Sbjct: 107790 attttatttttgtacataaaaaatt 107814
>gb|AC124560.4| Mus musculus BAC clone RP23-166O22 from chromosome 5, complete sequence Length = 222593 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 724 attgtaaattattttattttt 744 ||||||||||||||||||||| Sbjct: 86812 attgtaaattattttattttt 86832
>gb|AC130801.16| Medicago truncatula clone mth2-12p19, complete sequence Length = 119328 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 718 gatgtcattgtaaattatttt 738 ||||||||||||||||||||| Sbjct: 88138 gatgtcattgtaaattatttt 88158
>gb|AC125038.4| Mus musculus BAC clone RP23-333P7 from chromosome 5, complete sequence Length = 198463 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 724 attgtaaattattttattttt 744 ||||||||||||||||||||| Sbjct: 49285 attgtaaattattttattttt 49265
>gb|AC146218.2| Pan troglodytes BAC clone CH251-267E2 from Y, complete sequence Length = 203014 Score = 42.1 bits (21), Expect = 2.9 Identities = 30/33 (90%) Strand = Plus / Plus Query: 712 tgacatgatgtcattgtaaattattttattttt 744 |||||||||||| ||| ||||| |||||||||| Sbjct: 35174 tgacatgatgtctttgaaaatttttttattttt 35206
>gb|AF240806.1| Platydesmus sp. 'Pla' elongation factor-1alpha mRNA, partial cds Length = 1132 Score = 42.1 bits (21), Expect = 2.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 607 cccttcgggacgtctacaagattgg 631 |||||| |||||||||||||||||| Sbjct: 609 cccttcaggacgtctacaagattgg 633
>gb|AF388862.1| Cortinarius anomalus elongation factor 1-alpha (EF1-alpha) gene, partial cds Length = 625 Score = 42.1 bits (21), Expect = 2.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 641 tgtgcatgttggtcgtgttgagact 665 ||||| ||||||||||||||||||| Sbjct: 33 tgtgcctgttggtcgtgttgagact 57
>gb|AC140254.4| Mus musculus BAC clone RP23-467N7 from chromosome 10, complete sequence Length = 196465 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 724 attgtaaattattttattttt 744 ||||||||||||||||||||| Sbjct: 71943 attgtaaattattttattttt 71963
>gb|AF482758.2| Cowpox virus strain Brighton Red, complete genome Length = 224499 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 736 tttatttttgtacataaataa 756 ||||||||||||||||||||| Sbjct: 160957 tttatttttgtacataaataa 160977
>gb|AC126917.1| Homo sapiens chromosome 5 clone RP11-467F22, complete sequence Length = 206737 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 735 ttttatttttgtacataaata 755 ||||||||||||||||||||| Sbjct: 165248 ttttatttttgtacataaata 165268
>gb|AF012825.2| Ectromelia virus strain Moscow, complete genome Length = 209771 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 736 tttatttttgtacataaataa 756 ||||||||||||||||||||| Sbjct: 152327 tttatttttgtacataaataa 152347
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8 Length = 28434780 Score = 42.1 bits (21), Expect = 2.9 Identities = 30/33 (90%) Strand = Plus / Plus Query: 452 cgcctccctgcgctctttgccgccgccgtcgcc 484 ||||||||||||||| |||| ||||||||||| Sbjct: 17151221 cgcctccctgcgctcgctgcctccgccgtcgcc 17151253
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7 Length = 29644043 Score = 42.1 bits (21), Expect = 2.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 443 ccgcgccgccgcctccctgcgctct 467 |||||||||||||||||| |||||| Sbjct: 3005258 ccgcgccgccgcctccctccgctct 3005234
>emb|CR931763.8| Zebrafish DNA sequence from clone DKEY-65B12 in linkage group 5, complete sequence Length = 186739 Score = 42.1 bits (21), Expect = 2.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 734 attttatttttgtacataaataatt 758 ||||||||||| ||||||||||||| Sbjct: 168077 attttatttttttacataaataatt 168101
>emb|AL136090.12| Human DNA sequence from clone RP11-97N19 on chromosome 20 Contains the 5' end of the SLC24A3 gene for solute carrier family 24 (sodium/potassium/calcium exchanger) member 3, a novel gene and a CpG island, complete sequence Length = 185473 Score = 42.1 bits (21), Expect = 2.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 442 cccgcgccgccgcctccctgcgctc 466 |||||||||||||||||| |||||| Sbjct: 169292 cccgcgccgccgcctcccggcgctc 169268
>gb|AC154841.2| Mus musculus BAC clone RP23-61I24 from chromosome 14, complete sequence Length = 211666 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 725 ttgtaaattattttatttttg 745 ||||||||||||||||||||| Sbjct: 99723 ttgtaaattattttatttttg 99743
>emb|BX936364.6| Zebrafish DNA sequence from clone CH211-247G11 in linkage group 18, complete sequence Length = 146733 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 719 atgtcattgtaaattatttta 739 ||||||||||||||||||||| Sbjct: 9536 atgtcattgtaaattatttta 9556
>emb|BX957220.1| Methanococcus maripaludis S2 complete genome; segment 2/5 Length = 349648 Score = 42.1 bits (21), Expect = 2.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 733 tattttatttttgtacataaataat 757 ||||||||||||| ||||||||||| Sbjct: 132005 tattttatttttggacataaataat 131981
>gb|AF314822.1|AF314822 Mus musculus strain 129/SvJ K+-dependent Na/Ca exchanger (Slc24A3) gene, partial cds Length = 907 Score = 42.1 bits (21), Expect = 2.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 442 cccgcgccgccgcctccctgcgctc 466 ||||| ||||||||||||||||||| Sbjct: 397 cccgcaccgccgcctccctgcgctc 373
>gb|AF137389.1| Metajapyx subterraneus elongation factor-1 alpha mRNA, partial cds Length = 1132 Score = 42.1 bits (21), Expect = 2.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 607 cccttcgggacgtctacaagattgg 631 |||||| |||||||||||||||||| Sbjct: 609 cccttcaggacgtctacaagattgg 633
>gb|AY205999.1| Malva pusilla translation elongation factor-1 alpha mRNA, partial cds Length = 1320 Score = 42.1 bits (21), Expect = 2.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 641 tgtgcatgttggtcgtgttgagact 665 ||||| ||||||||||||||||||| Sbjct: 608 tgtgcctgttggtcgtgttgagact 632
>gb|AF158101.6| Enterobacteria phage T4, complete genome Length = 168903 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 687 ataaacgatattattatattt 707 ||||||||||||||||||||| Sbjct: 107646 ataaacgatattattatattt 107626
>dbj|BS000645.2| Pan troglodytes chromosome Y clone: PTB-520M19, complete sequence Length = 166301 Score = 42.1 bits (21), Expect = 2.9 Identities = 30/33 (90%) Strand = Plus / Minus Query: 712 tgacatgatgtcattgtaaattattttattttt 744 |||||||||||| ||| ||||| |||||||||| Sbjct: 121632 tgacatgatgtctttgaaaatttttttattttt 121600
>dbj|AP005409.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0024L18 Length = 150128 Score = 42.1 bits (21), Expect = 2.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 443 ccgcgccgccgcctccctgcgctct 467 |||||||||||||||||| |||||| Sbjct: 51313 ccgcgccgccgcctccctccgctct 51289
>dbj|BS000535.1| Pan troglodytes chromosome Y clone:PTB-096E06, complete sequences Length = 198405 Score = 42.1 bits (21), Expect = 2.9 Identities = 30/33 (90%) Strand = Plus / Plus Query: 712 tgacatgatgtcattgtaaattattttattttt 744 |||||||||||| ||| ||||| |||||||||| Sbjct: 24488 tgacatgatgtctttgaaaatttttttattttt 24520
>gb|AC079465.5| Homo sapiens chromosome 5 clone CTD-2124P24, complete sequence Length = 184585 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 735 ttttatttttgtacataaata 755 ||||||||||||||||||||| Sbjct: 104267 ttttatttttgtacataaata 104247
>dbj|AP005389.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0091C18 Length = 154416 Score = 42.1 bits (21), Expect = 2.9 Identities = 30/33 (90%) Strand = Plus / Plus Query: 452 cgcctccctgcgctctttgccgccgccgtcgcc 484 ||||||||||||||| |||| ||||||||||| Sbjct: 75076 cgcctccctgcgctcgctgcctccgccgtcgcc 75108
>dbj|AP005298.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1770_H03 Length = 189893 Score = 42.1 bits (21), Expect = 2.9 Identities = 30/33 (90%) Strand = Plus / Plus Query: 452 cgcctccctgcgctctttgccgccgccgtcgcc 484 ||||||||||||||| |||| ||||||||||| Sbjct: 11846 cgcctccctgcgctcgctgcctccgccgtcgcc 11878
>emb|AJ324344.1|HSA324344 Homo sapiens genomic sequence surrounding NotI site, clone NR5-DA13R Length = 838 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 299 tcccttttttcaatattttgt 319 ||||||||||||||||||||| Sbjct: 811 tcccttttttcaatattttgt 831
>gb|BC009604.1| Homo sapiens chromosome 15 open reading frame 15, mRNA (cDNA clone MGC:14750 IMAGE:4282059), complete cds Length = 1404 Score = 42.1 bits (21), Expect = 2.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 728 taaattattttatttttgtacataa 752 ||||||||||||||||| ||||||| Sbjct: 601 taaattattttatttttttacataa 625
>emb|X14428.1|GDMYAL12 Gallus gallus MLC gene for embryonic myosin alkali light chain exons 1 and 2 and joined CDS Length = 1575 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 469 tgccgccgccgtcgcccattg 489 ||||||||||||||||||||| Sbjct: 766 tgccgccgccgtcgcccattg 746
>gb|U37059.1|EVU37059 Ectromelia virus A33R homolog gene, complete cds Length = 635 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 736 tttatttttgtacataaataa 756 ||||||||||||||||||||| Sbjct: 612 tttatttttgtacataaataa 632
>gb|AC141564.4| Mus musculus BAC clone RP23-361B14 from 10, complete sequence Length = 210784 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 724 attgtaaattattttattttt 744 ||||||||||||||||||||| Sbjct: 20200 attgtaaattattttattttt 20180
>gb|AY487540.1| Uncultured organism clone 5B17 nitrilase (BD5307) gene, complete cds Length = 966 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 190 aggcttgctccactcgcctcg 210 ||||||||||||||||||||| Sbjct: 359 aggcttgctccactcgcctcg 339
>dbj|AB003713.1| Protula magnifica mRNA for elongation factor-1alpha, partial cds Length = 1134 Score = 42.1 bits (21), Expect = 2.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 607 cccttcgggacgtctacaagattgg 631 |||||| |||||||||||||||||| Sbjct: 620 cccttcaggacgtctacaagattgg 644
>emb|AL772192.8| Mouse DNA sequence from clone RP23-161B16 on chromosome 2, complete sequence Length = 61365 Score = 42.1 bits (21), Expect = 2.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 442 cccgcgccgccgcctccctgcgctc 466 ||||| ||||||||||||||||||| Sbjct: 3590 cccgcaccgccgcctccctgcgctc 3566 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 150,113,043 Number of extensions: 9672241 Number of successful extensions: 281877 Number of sequences better than 10.0: 72 Number of HSP's gapped: 281876 Number of HSP's successfully gapped: 73 Length of query: 781 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 759 Effective length of database: 18,508,616,841 Effective search space: 14048040182319 Effective search space used: 14048040182319 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
