ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf2n15 |
|---|---|
| Clone Library Name | barley_pub |
>LOC_Os12g07050:12012.t00590:unspliced-genomic protein SSU72, putative, expressed| Length = 3994 Score = 150 bits (322), Expect(4) = 1e-92 Identities = 59/68 (86%), Positives = 63/68 (92%) Frame = +2 / +1 Query: 104 FAMVCSSNMNRSMEAHAVLGRAALDVESYGTGSQVKLPGPSMHEPNVYDFGTPYGGIYDD 283 FAMVCSSNMNRSMEAH++LGRA LDV SYGTG+ VKLPGPS+HEPNVYDFGTPY IYDD Sbjct: 145 FAMVCSSNMNRSMEAHSLLGRAGLDVASYGTGTHVKLPGPSLHEPNVYDFGTPYNVIYDD 324 Query: 284 LRRKDPDL 307 LRRKDPDL Sbjct: 325 LRRKDPDL 348 Score = 105 bits (223), Expect(4) = 1e-92 Identities = 41/51 (80%), Positives = 46/51 (90%) Frame = +2 / +2 Query: 299 PDLYKRNGLLPMLKRNISVKLAPQRWQDNTGDGVFDMILTFEERVFDLVVE 451 P YKRNGLLPMLKRN SVKLAPQRWQDN GDG+FD+I +FEERVFDL+V+ Sbjct: 677 PFRYKRNGLLPMLKRNTSVKLAPQRWQDNAGDGLFDVIFSFEERVFDLIVD 829 Score = 88.1 bits (186), Expect(4) = 1e-92 Identities = 36/47 (76%), Positives = 40/47 (85%) Frame = +2 / +2 Query: 434 FDLVVEDMNNREQRLLKSVLIINMDVKDNHEEAAVGAKLALDLCHKL 574 F L DM+NREQR+LK+ LIINMDVKDNHEEA VGAKLALDLC K+ Sbjct: 968 FSLFAADMHNREQRMLKNALIINMDVKDNHEEAGVGAKLALDLCQKV 1108 Score = 67.5 bits (141), Expect(4) = 1e-92 Identities = 26/37 (70%), Positives = 31/37 (83%) Frame = +2 / +2 Query: 569 KLEAVADDWEEIIDDLVAAFEKQHKRKLTYYISFY*L 679 +LE +DWEEIIDDL+ FEKQHKRKLTY ++FY*L Sbjct: 3389 QLEGADEDWEEIIDDLIITFEKQHKRKLTYNMAFY*L 3499 Score = 106 bits (227), Expect(5) = 9e-63 Identities = 50/71 (70%), Positives = 55/71 (77%) Frame = -3 / -3 Query: 273 MPP*GVPKS*TLGSCIDGPGSFTWEPVP*DSTSSAARPSTACASMLRFMFDEQTIANLHL 94 M *GVPKS*TLGS +GPGS TW PVP*++TSS ARPS+ CASMLRFMFDE TIANL Sbjct: 314 MTL*GVPKS*TLGSWREGPGSLTWVPVP*EATSSPARPSSECASMLRFMFDEHTIANLIF 135 Query: 93 LGAVILAPRRR 61 L A + RRR Sbjct: 134 LLASMPIRRRR 102 Score = 95.5 bits (202), Expect(5) = 9e-63 Identities = 38/46 (82%), Positives = 42/46 (91%) Frame = -2 / -1 Query: 448 NN*VEDPLLKGEYHIKHPIAGVILPPLRRQLH*DVPLQHWQQAVPL 311 ++*VEDPLLK EYHIK PIAG++LPPLRRQL * VPLQHWQQAVPL Sbjct: 826 DD*VEDPLLKAEYHIKQPIAGIVLPPLRRQLD*GVPLQHWQQAVPL 689 Score = 70.3 bits (147), Expect(5) = 9e-63 Identities = 30/35 (85%), Positives = 31/35 (88%) Frame = -3 / -2 Query: 564 HKSKASFAPTAASSWLSFTSILIISTLFNNLCSRL 460 HKSKASFAPT ASSWLSFTSILIIS F+ LCSRL Sbjct: 1098 HKSKASFAPTPASSWLSFTSILIISAFFSILCSRL 994 Score = 35.0 bits (70), Expect(5) = 9e-63 Identities = 15/18 (83%), Positives = 15/18 (83%) Frame = -3 / -2 Query: 678 S**KEM*YVSFRLCCFSN 625 S** M YVSFRLCCFSN Sbjct: 3498 S**NAMLYVSFRLCCFSN 3445 Score = 23.5 bits (45), Expect(5) = 9e-63 Identities = 9/11 (81%), Positives = 10/11 (90%) Frame = -3 / -1 Query: 75 APRRRQGRVGA 43 A RRRQGRVG+ Sbjct: 106 AARRRQGRVGS 74 Score = 73.0 bits (153), Expect(3) = 4e-39 Identities = 35/47 (74%), Positives = 37/47 (78%) Frame = -2 / -2 Query: 265 VRGAEVVDVGLVHRRAWELHLGAGAVGLDV*RRAAQHRVRLHASVHV 125 V GAEVVDVGLV RA EL +GAGAVG DV RAA+ RVRLHA VHV Sbjct: 306 VGGAEVVDVGLVEGRAGELDVGAGAVGGDVEPRAAEQRVRLHAPVHV 166 Score = 69.3 bits (145), Expect(3) = 4e-39 Identities = 30/44 (68%), Positives = 34/44 (77%) Frame = -1 / -3 Query: 563 TNLKQASPQQQLLHGYLSRPY*LSARSSITSARGYSYLQQLSRR 432 TNLKQA Q QLLHGYLS PY*LSARS + A GY+YLQQ ++ Sbjct: 1097 TNLKQALHQHQLLHGYLSHPY*LSARSLASFAHGYAYLQQKEKK 966 Score = 67.0 bits (140), Expect(3) = 4e-39 Identities = 25/29 (86%), Positives = 27/29 (93%) Frame = -3 / -2 Query: 402 NTPSPVLSCHLCGASFTEMFLFSIGSRPF 316 N+PSP LSCHLCGAS TE+FLFSIGSRPF Sbjct: 780 NSPSPALSCHLCGASLTEVFLFSIGSRPF 694 Score = 90.0 bits (190), Expect(3) = 4e-35 Identities = 37/43 (86%), Positives = 38/43 (88%) Frame = +3 / +3 Query: 315 GTACCQC*RGTSQ*SWRRRGGRITPAMGCLI*YSPLRRGSST* 443 GTACCQC*RGT Q SWRRRGGR PAMGCL+*YS LRRGSST* Sbjct: 693 GTACCQC*RGTPQSSWRRRGGRTMPAMGCLM*YSALRRGSST* 821 Score = 68.4 bits (143), Expect(3) = 4e-35 Identities = 30/46 (65%), Positives = 35/46 (76%) Frame = +1 / +1 Query: 445 C*RYE*PRAEVIEERADNQYGRER*P*RSCCWGEACFRFVPQA*SS 582 C RY *P A+ +ERADNQYG ER*P*RS CW +ACFRFV + S+ Sbjct: 979 CCRYA*P*AKDAKERADNQYGCER*P*RSWCWCKACFRFVSEGIST 1116 Score = 37.7 bits (76), Expect(3) = 4e-35 Identities = 16/25 (64%), Positives = 18/25 (72%) Frame = +1 / +3 Query: 64 AARSKDDGAEEVEVRDGLLVEHEPK 138 AA G EE EVRDG+LVEHEP+ Sbjct: 105 AAADGHGGEEEDEVRDGVLVEHEPE 179 Score = 84.0 bits (177), Expect(2) = 5e-25 Identities = 38/46 (82%), Positives = 40/46 (86%) Frame = +1 / +1 Query: 307 VQEERPAANAEEEHLSEAGAAEVAG*HRRWGV*YDTHL*GEGLRLS 444 VQEERPAANAEEEHLS+AGAAEVAG RRW V* D L*GEGLRL+ Sbjct: 685 VQEERPAANAEEEHLSQAGAAEVAGQCRRWAV*CDIQL*GEGLRLN 822 Score = 56.1 bits (116), Expect(2) = 5e-25 Identities = 30/45 (66%), Positives = 34/45 (75%) Frame = +3 / +3 Query: 444 LLKI*ITASRGY*RAC**SIWT*KITMKKLLLGRSLL*ICATSLK 578 LL+I IT S+G *R **SIW *KITMKKL+L +SLL*IC K Sbjct: 978 LLQICITVSKGC*RTR**SIWM*KITMKKLVLVQSLL*ICVRRYK 1112 Score = 64.8 bits (135), Expect(2) = 2e-16 Identities = 28/40 (70%), Positives = 32/40 (80%) Frame = -2 / -1 Query: 571 LVAQI*SKLRPNSSFFMVIFHVHIDYQHALQ*PLLAVIHI 452 L+ QI*SKL N+SFFMVIFH+HIDYQ L PLL V+HI Sbjct: 1105 LLTQI*SKLCTNTSFFMVIFHIHIDYQRVL*HPLLTVMHI 986 Score = 46.0 bits (94), Expect(2) = 2e-16 Identities = 19/28 (67%), Positives = 23/28 (82%) Frame = -1 / -3 Query: 455 YLQQLSRRPSPQR*VSYQTPHRRCYPAT 372 Y ++LSRRPSPQ *+S+QT HRR PAT Sbjct: 833 YHRRLSRRPSPQS*ISHQTAHRRHCPAT 750
>LOC_Os08g37120:12008.t03449:unspliced-genomic transposon protein, putative, unclassified| Length = 2753 Score = 25.4 bits (49), Expect(2) = 3.0 Identities = 9/19 (47%), Positives = 13/19 (68%) Frame = +2 / +2 Query: 344 NISVKLAPQRWQDNTGDGV 400 ++ +K P RW D TG+GV Sbjct: 2159 DVYMKEKPIRWVDPTGEGV 2215 Score = 24.9 bits (48), Expect(2) = 3.0 Identities = 8/14 (57%), Positives = 10/14 (71%) Frame = +1 / +1 Query: 529 SCCWGEACFRFVPQ 570 SCCW + F FVP+ Sbjct: 2344 SCCWSFSQF*FVPR 2385
>LOC_Os08g02640:12008.t00158:unspliced-genomic succinate dehydrogenase iron-sulfur protein,mitochondrial| precursor, putative, expressed Length = 3537 Score = 33.1 bits (66), Expect = 3.0 Identities = 12/20 (60%), Positives = 14/20 (70%) Frame = +3 / -3 Query: 339 RGTSQ*SWRRRGGRITPAMG 398 RGT+ +WRRRGGR P G Sbjct: 175 RGTTSGAWRRRGGRRAPGRG 116
>LOC_Os08g21940:12008.t01982:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 2589 Score = 32.7 bits (65), Expect = 4.2 Identities = 13/51 (25%), Positives = 25/51 (49%) Frame = -3 / +1 Query: 831 C*ICDTYFGTKRNIKLKTLILKQRGYQPSKTSHVKQPSLCDSNVHRGKAVP 679 C +C+ ++ +L +I K + Q + ++QP D+N H A+P Sbjct: 2332 CFLCEGTDHVPKDCQLNAVIAKTKKEQGTTVQPIRQPMAVDNNSHNPSALP 2484
>LOC_Os02g22060:12002.t01994:unspliced-genomic membrane protein, putative, expressed| Length = 7120 Score = 32.7 bits (65), Expect = 4.2 Identities = 12/28 (42%), Positives = 13/28 (46%) Frame = +3 / +3 Query: 315 GTACCQC*RGTSQ*SWRRRGGRITPAMG 398 GT CC+ G WR GG TP G Sbjct: 4578 GTGCCRAEEGREGQLWRSEGGAATPTRG 4661
>LOC_Os03g28960:12003.t02515:unspliced-genomic DNA-directed RNA polymerase III 130 kDa polypeptide, putative,| expressed Length = 18541 Score = 32.2 bits (64), Expect = 5.7 Identities = 17/48 (35%), Positives = 23/48 (47%) Frame = -2 / -1 Query: 610 IDYFLPVISHCFKLVAQI*SKLRPNSSFFMVIFHVHIDYQHALQ*PLL 467 + Y P +C K+ A SK+ NSSF+ I H+ Y PLL Sbjct: 2332 LHYHKPWKLYCLKVTASFVSKIANNSSFYCHIILEHVLY*ITTNIPLL 2189
>LOC_Os06g40760:12006.t03771:unspliced-genomic expressed protein| Length = 656 Score = 31.8 bits (63), Expect = 7.9 Identities = 12/21 (57%), Positives = 13/21 (61%) Frame = +3 / +2 Query: 339 RGTSQ*SWRRRGGRITPAMGC 401 RG+S WRRRG R TP C Sbjct: 218 RGSSPRGWRRRGPRATPGSTC 280 Database: tigr.seq.out Posted date: Jul 20, 2007 8:58 AM Number of letters in database: 166,841,660 Number of sequences in database: 56,278 Lambda K H 0.318 0.134 0.401 Matrix: BLOSUM62 Number of Sequences: 56278 Number of Hits to DB: 321,403,443 Number of extensions: 4584562 Number of successful extensions: 17732 Number of sequences better than 10.0: 7 Length of query: 323 Length of database: 55,613,886 Length adjustment: 50 Effective length of query: 273 Effective length of database: 52,799,986 Effective search space: 14414396178 Effective search space used: 14414396178 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.3 bits)
