>P45972:YNZB_CAEEL Uncharacterized protein T09A5.12 - Caenorhabditis elegans|
          Length = 708
 Score = 36.6 bits (83), Expect = 0.58
 Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
 Frame = +1

Query: 367 TEGKDGVGKGLTRRYFVCHRAGNTPAKPFDDGAKQQRNRKSSRCG--CQAYLRIGRDAGA 540
           + G    G+GL   Y  C R+G+   +P     +    R S +CG  C AYL+I ++   
Sbjct: 377 SSGSKKWGRGLQVHYLTCSRSGDQKERPNKKYVRPP--RPSIKCGRNCMAYLKIKQNPTV 434

Query: 541 GGLEWRVTGFSNHHNHEL 594
              E ++ G  +H  HE+
Sbjct: 435 S--ELQIEGCLHHSGHEI 450

>Q00999:VCAP_SHV21 Major capsid protein - Saimiriine herpesvirus 2 (strain 11) (SaHV-2)|
            (Herpesvirus saimiri)
          Length = 1371

 Score = 33.5 bits (75), Expect = 4.9
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 9/70 (12%)
 Frame = +1

Query: 832  MCRNVKEKDPNFRYDFTKDANNCLENIAWSYASSIQSY---------EVFGDAVVFDTTH 984
            +C++  +  P F     +      E+I +S  +S   +         EV  DAVVFD  H
Sbjct: 1021 ICQSRHKIHPGFALTAVRTDEVVAEHIMYSSKASTSVFIGQPTVHRKEVRSDAVVFDINH 1080

Query: 985  RLISIDMALG 1014
             L S+D ALG
Sbjct: 1081 ELASLDTALG 1090

>Q4R6Y6:SNPC3_MACFA snRNA-activating protein complex subunit 3 - Macaca fascicularis|
           (Crab eating macaque) (Cynomolgus monkey)
          Length = 412

 Score = 33.5 bits (75), Expect = 4.9
 Identities = 33/129 (25%), Positives = 53/129 (41%), Gaps = 8/129 (6%)
 Frame = +1

Query: 478 NRKSSRCGCQAYLRIGRDAGAGGLEWRVTGFSNHHNHELLRQDEVRFLPAYRVISDSDRD 657
           N ++   G    L  GR  GAG L               LR+     LP  R I+DSDR+
Sbjct: 38  NTRAFHVGAFGELWRGRLRGAGDLS--------------LREPPASALPGSRGIADSDRE 83

Query: 658 RILVFAKSGISVQQMMRI-----MELEKCVQPGTLPFTEKDVRNLIQ---SFRRFEHQEE 813
              V      S++    +     ++  KC++ G  P    +  +L+      R  EH+EE
Sbjct: 84  DAAVARDLDCSLEAAAELRAVCGLDKLKCLEDGEDPEVIPENTDLVTLGVRKRFLEHREE 143

Query: 814 SVDLLQMCR 840
           ++ + + CR
Sbjct: 144 TITIDRACR 152

>Q90850:HIC1_CHICK Hypermethylated in cancer 1 protein - Gallus gallus (Chicken)|
          Length = 676

 Score = 33.5 bits (75), Expect = 4.9
 Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = -1

Query: 408 PPGQPLAHAILPLRAVPPDREPALLCEPAVELVRRFVCQEPL-PYVRDG 265
           P G P  HA  P R+ PP  EP L      EL+ R++  EPL PY+ +G
Sbjct: 302 PGGHP--HATDPFRSTPPCAEPPLPRGDGRELMYRWMKHEPLGPYLDEG 348

>P47038:YJG4_YEAST Putative uncharacterized protein YJL064W - Saccharomyces cerevisiae|
            (Baker's yeast)
          Length = 131

 Score = 32.7 bits (73), Expect = 8.3
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +3

Query: 1605 ATELGKHNSQDSSSSGRTCCCC 1670
            A E+  ++S  SS SG TCCCC
Sbjct: 39   AAEMSSYDSVSSSGSGGTCCCC 60

>Q66H10:FBX39_RAT F-box only protein 39 - Rattus norvegicus (Rat)|
          Length = 443

 Score = 32.7 bits (73), Expect = 8.3
 Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 6/84 (7%)
 Frame = +1

Query: 1237 ASRFPS--WFSAVLGGHYNDWEVEFYRLYNMESTMDFDLGWSDMVSCYGLHGNR----HI 1398
            AS F S  W+    G +    E++F   YN   T  F +    ++SC G   NR     I
Sbjct: 72   ASEFESALWYVKKFGRYLEHLEIKFLNPYNAVLTKKFQVTMRGLLSCLGKSNNRLRSLSI 131

Query: 1399 ASLFASRNLWASPYLRGHFLAGLT 1470
              L   R +W +  +RG  +  L+
Sbjct: 132  QHLELDRLVWRNS-IRGSLIKSLS 154

>Q5NBU5:FBX39_MOUSE F-box only protein 39 - Mus musculus (Mouse)|
          Length = 443

 Score = 32.7 bits (73), Expect = 8.3
 Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 6/84 (7%)
 Frame = +1

Query: 1237 ASRFPS--WFSAVLGGHYNDWEVEFYRLYNMESTMDFDLGWSDMVSCYGLHGNR----HI 1398
            AS F S  W+    G +    E++F   YN   T  F +    ++SC G   NR     I
Sbjct: 72   ASEFESALWYIKKFGRYLEHLEIKFLNPYNAVLTKKFQVTMRGLLSCLGKSNNRLRSLSI 131

Query: 1399 ASLFASRNLWASPYLRGHFLAGLT 1470
              L   R +W +  +RG  +  L+
Sbjct: 132  QHLELDRLVWRNS-IRGSLIKSLS 154

>Q32LM4:FBX39_BOVIN F-box only protein 39 - Bos taurus (Bovine)|
          Length = 443

 Score = 32.7 bits (73), Expect = 8.3
 Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 6/84 (7%)
 Frame = +1

Query: 1237 ASRFPS--WFSAVLGGHYNDWEVEFYRLYNMESTMDFDLGWSDMVSCYGLHGNR----HI 1398
            AS F S  W+    G +    E++F   YN   T  F +    ++SC G   NR     I
Sbjct: 72   ASEFESALWYVKKFGRYLEHLEIKFLNPYNAVLTKKFQVTMRGLLSCLGKSNNRLKSLSI 131

Query: 1399 ASLFASRNLWASPYLRGHFLAGLT 1470
              L   R +W +  +R  F+  L+
Sbjct: 132  QHLELDRLVWRNS-IRSSFMKSLS 154


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 520,001,394
Number of extensions: 12289188
Number of successful extensions: 33885
Number of sequences better than 10.0: 8
Number of HSP's gapped: 33871
Number of HSP's successfully gapped: 8
Length of query: 915
Length of database: 100,686,439
Length adjustment: 122
Effective length of query: 793
Effective length of database: 67,222,449
Effective search space: 53307402057
Effective search space used: 53307402057
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)