ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf2n05 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001059421.1| Oryza sativa (japonica cultivar-group) Os04g0443000 (Os04g0443000) mRNA, complete cds Length = 2425 Score = 389 bits (196), Expect = e-104 Identities = 636/782 (81%), Gaps = 3/782 (0%) Strand = Plus / Plus Query: 682 gggatctctgtgcagcagatgatgaggataatggagctggagaagtgcgtccagccaggg 741 |||||||| |||||||||||||||||||| ||||||||||||| | ||||| |||| || Sbjct: 775 gggatctccgtgcagcagatgatgaggatcatggagctggagaggcgcgtcgagccgggc 834 Query: 742 actctcccatttactgagaaggatgtgagaaatctcatacagtccttcaggaggttcgag 801 | ||| || || || |||||||||||||| || ||||| ||||| | ||||| || || Sbjct: 835 aatctgcccttcacagagaaggatgtgaggaacctcatccagtcgtgcaggaagtctga- 893 Query: 802 catcaggaggagagtgttgacctgcttcagatgtgcagaaatgttaaggagaaggatccc 861 |||||||||||| || || ||| | | |||||||||| || |||||||||| ||| Sbjct: 894 --tcaggaggagagcgtcgatctgatcaaaatgtgcagaagatttcaggagaaggacccc 951 Query: 862 aatttcaggtacgacttcaccaaagatgcgaacaactgccttgagaacatcgcctggtca 921 |||||| ||| || |||||||||| |||| |||| || | |||||| | |||||||| Sbjct: 952 gatttcaagtatgaattcaccaaaggcgcgagcaaccgcgtcgagaacgttgcctggtcg 1011 Query: 922 tacgcatcatcgattcagtcttatgaggtatttggtgatgctgttgtgtttgacaccact 981 | ||||| ||| ||||||| |||||| | ||||||||||||||||| || |||| || Sbjct: 1012 tttgcatcgtcggttcagtcgtatgagatgtttggtgatgctgttgtattcaacacgaca 1071 Query: 982 catcggctaatttctattgacatggcactgggtatttggattggaatgaacaatcatggg 1041 |||||| | | || | |||||| || ||||||||| ||||| |||||||||||||| Sbjct: 1072 catcggttgcctgctctggacatgctgcttggtatttgggttggattgaacaatcatggg 1131 Query: 1042 atgccttgcttcttcagttgcgcacttctgagggaagaaaatctgcaatccttcacatgg 1101 |||||||||||||| ||||||| |||| ||||| |||| ||||||||||| ||||| Sbjct: 1132 atgccttgcttctttggttgcgcttttctaagggaggaaagtctgcaatcctatgcatgg 1191 Query: 1102 gcattacaggtgtttcttaacttcatgaacagaaaagcccctcaaacaatattgactgat 1161 |||||| |||| ||||| ||||||||||||||||| || || | ||||||||||| ||| Sbjct: 1192 gcattaaaggtatttctcaacttcatgaacagaaaggctccgctgacaatattgacggat 1251 Query: 1162 caaaataagtatctcaaagaagcagttcaaaaggagctaccaaacacaaagcatgccttc 1221 |||||| ||| ||||| |||||| || |||||||||| ||| ||||||||| ||| || Sbjct: 1252 gaaaatatgtacctcaaggaagcaattgaaaaggagcttccaggcacaaagcaagccctc 1311 Query: 1222 tccatcgggcttcttgcatccaggtttccatcttggttcagtgcagttctcgggggacac 1281 | ||| ||||| | ||| ||||||| ||||||||||| ||||||||| || | || Sbjct: 1312 tgcatatggcttatcgcagccaggttcccatcttggtttgatgcagttcttggcgaacgg 1371 Query: 1282 tataatgactgggaagttgagttctataggctctacaacatggaaagcacaatggacttt 1341 || ||| |||| ||| ||||||| ||||| | || |||||||||||||||||||| ||| Sbjct: 1372 tacaatagctggaaagatgagttcgataggttgtataacatggaaagcacaatggagttt 1431 Query: 1342 gatcttggatggagtgacatggtgagctgctatggattgcatggaaataggcacattgct 1401 |||||||| |||||||||||| ||| | |||||||| | ||||| ||| ||||||||||| Sbjct: 1432 gatcttgggtggagtgacatgatgaacagctatggactacatgggaatgggcacattgct 1491 Query: 1402 agcctgtttgcatcacggaacctttgggcatcgccatatttgagaggacattttttggca 1461 || |||||||||||||| | || ||||||| |||||||||||||| || ||||| ||| Sbjct: 1492 agtctgtttgcatcacgaactctctgggcattaccatatttgagagggcagtttttcgca 1551 Query: 1462 gg 1463 || Sbjct: 1552 gg 1553 Score = 186 bits (94), Expect = 3e-43 Identities = 267/324 (82%), Gaps = 3/324 (0%) Strand = Plus / Plus Query: 1630 ctcaagacagcagctccagtggaaggacatgctgctgctgttttcaccccatacgcgttc 1689 |||||||| ||| ||||| ||||| | ||||| ||||| ||| |||| || || || ||| Sbjct: 1723 ctcaagactgcaactccaatggaaaggcatgcggctgcagttctcactccttatgccttc 1782 Query: 1690 tgtaagctacaggatgagcttgtgggggctgcccattatgcatacttccacttggaaggg 1749 | ||||||||| ||||||||||| | |||| || ||||||| ||||||||||||||| Sbjct: 1783 tctaagctacaagatgagcttgttgtggcttgtcaatatgcatcattccacttggaaggg 1842 Query: 1750 aatgcttatcttgtccggcaccataccacgacagatggcggt---tgcaatgtcacatgg 1806 |||| | ||| ||||| || ||||||| |||||| | |||| |||||||| |||||| Sbjct: 1843 aatgtctttctggtccgtcatcataccaagacagaagacggtgggtgcaatgtgacatgg 1902 Query: 1807 aaccaaaaggaagagctaatttcttgcagctgccaaatgtttgaatcatcagggatcctc 1866 | ||||| || ||||||||||||||||||||| | |||||||| || ||||||||||| Sbjct: 1903 agccaaagagaggagctaatttcttgcagctgcaatatgtttgagtctgcagggatcctc 1962 Query: 1867 tgccggcatgccctccgtttgctcacaacactaaactactttcagattccggaccattac 1926 |||||||||| ||||||| ||||| | || || |||||||||||||| ||||||||||| Sbjct: 1963 tgccggcatggcctccgtgtgctctcgaccctcaactactttcagatcccggaccattat 2022 Query: 1927 gttcctgtccgatggcgtagaacc 1950 | ||| ||||||||||||||| Sbjct: 2023 ctccctcctcgatggcgtagaacc 2046 Score = 182 bits (92), Expect = 4e-42 Identities = 214/255 (83%), Gaps = 6/255 (2%) Strand = Plus / Plus Query: 280 gggcagcggttcctgacacacgaagcggcgtacgagctctacagcgggttcgcaaagcag 339 |||||| |||||| ||| ||||| |||||| |||||||||||||||||||||| | || | Sbjct: 349 gggcagaggttcccgacgcacgacgcggcgcacgagctctacagcgggttcgcgaggcgg 408 Query: 340 tgcgggttctcgatccggcggcaccgcacggaggggaaggatggcgtgggcaaggggctg 399 |||||||||||||||| || ||||| |||||||||||||| || ||||| | ||| ||| Sbjct: 409 cgcgggttctcgatccgccgccaccggacggaggggaaggacggggtggggaggggcctg 468 Query: 400 acccggcggtacttcgtgtgccaccgcgccggcaacacgccggcgaagcccttcgacgac 459 || || |||||||||||||||||||||| || ||| |||||||||||||||||| || | Sbjct: 469 acgaggaggtacttcgtgtgccaccgcgctgggaacccgccggcgaagcccttcgccgcc 528 Query: 460 ggcgc------gaagcagcagaggaacaggaagtcctcccgctgcgggtgccaggcgtac 513 ||||| | || |||||||||| || ||||||||||||||||||| |||||||| Sbjct: 529 ggcgccggcgacaggccgcagaggaaccggcggtcctcccgctgcgggtgcaaggcgtac 588 Query: 514 ctacgcattggcagg 528 | ||||| |||||| Sbjct: 589 atgcgcatcggcagg 603 Score = 71.9 bits (36), Expect = 1e-08 Identities = 45/48 (93%) Strand = Plus / Plus Query: 549 ggagtggcgggtcacggggttctctaaccaccacaaccatgagctcct 596 |||||||||||||||||| ||||| |||||||||||||| |||||||| Sbjct: 642 ggagtggcgggtcacgggcttctccaaccaccacaaccacgagctcct 689 Score = 65.9 bits (33), Expect = 7e-07 Identities = 57/65 (87%) Strand = Plus / Plus Query: 2071 cggatggatctcgcgacacaggaggtctctgtcctgctgtcccggataaagcagcaacct 2130 ||||||||| ||||||| | ||||||||||| |||| |||| ||||| | |||||||||| Sbjct: 2170 cggatggatatcgcgacgcgggaggtctctgccctgttgtcgcggatgaggcagcaacct 2229 Query: 2131 gttgt 2135 ||||| Sbjct: 2230 gttgt 2234 Score = 56.0 bits (28), Expect = 7e-04 Identities = 55/64 (85%) Strand = Plus / Plus Query: 2566 ggatggatctcgcgacacaggaggtctctgtcctgctgtcccggacaaggcagctacctg 2625 |||||||| ||||||| | ||||||||||| |||| |||| |||| ||||||| ||||| Sbjct: 2171 ggatggatatcgcgacgcgggaggtctctgccctgttgtcgcggatgaggcagcaacctg 2230 Query: 2626 ttgt 2629 |||| Sbjct: 2231 ttgt 2234
>dbj|AK100533.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023101L24, full insert sequence Length = 2426 Score = 389 bits (196), Expect = e-104 Identities = 636/782 (81%), Gaps = 3/782 (0%) Strand = Plus / Plus Query: 682 gggatctctgtgcagcagatgatgaggataatggagctggagaagtgcgtccagccaggg 741 |||||||| |||||||||||||||||||| ||||||||||||| | ||||| |||| || Sbjct: 776 gggatctccgtgcagcagatgatgaggatcatggagctggagaggcgcgtcgagccgggc 835 Query: 742 actctcccatttactgagaaggatgtgagaaatctcatacagtccttcaggaggttcgag 801 | ||| || || || |||||||||||||| || ||||| ||||| | ||||| || || Sbjct: 836 aatctgcccttcacagagaaggatgtgaggaacctcatccagtcgtgcaggaagtctga- 894 Query: 802 catcaggaggagagtgttgacctgcttcagatgtgcagaaatgttaaggagaaggatccc 861 |||||||||||| || || ||| | | |||||||||| || |||||||||| ||| Sbjct: 895 --tcaggaggagagcgtcgatctgatcaaaatgtgcagaagatttcaggagaaggacccc 952 Query: 862 aatttcaggtacgacttcaccaaagatgcgaacaactgccttgagaacatcgcctggtca 921 |||||| ||| || |||||||||| |||| |||| || | |||||| | |||||||| Sbjct: 953 gatttcaagtatgaattcaccaaaggcgcgagcaaccgcgtcgagaacgttgcctggtcg 1012 Query: 922 tacgcatcatcgattcagtcttatgaggtatttggtgatgctgttgtgtttgacaccact 981 | ||||| ||| ||||||| |||||| | ||||||||||||||||| || |||| || Sbjct: 1013 tttgcatcgtcggttcagtcgtatgagatgtttggtgatgctgttgtattcaacacgaca 1072 Query: 982 catcggctaatttctattgacatggcactgggtatttggattggaatgaacaatcatggg 1041 |||||| | | || | |||||| || ||||||||| ||||| |||||||||||||| Sbjct: 1073 catcggttgcctgctctggacatgctgcttggtatttgggttggattgaacaatcatggg 1132 Query: 1042 atgccttgcttcttcagttgcgcacttctgagggaagaaaatctgcaatccttcacatgg 1101 |||||||||||||| ||||||| |||| ||||| |||| ||||||||||| ||||| Sbjct: 1133 atgccttgcttctttggttgcgcttttctaagggaggaaagtctgcaatcctatgcatgg 1192 Query: 1102 gcattacaggtgtttcttaacttcatgaacagaaaagcccctcaaacaatattgactgat 1161 |||||| |||| ||||| ||||||||||||||||| || || | ||||||||||| ||| Sbjct: 1193 gcattaaaggtatttctcaacttcatgaacagaaaggctccgctgacaatattgacggat 1252 Query: 1162 caaaataagtatctcaaagaagcagttcaaaaggagctaccaaacacaaagcatgccttc 1221 |||||| ||| ||||| |||||| || |||||||||| ||| ||||||||| ||| || Sbjct: 1253 gaaaatatgtacctcaaggaagcaattgaaaaggagcttccaggcacaaagcaagccctc 1312 Query: 1222 tccatcgggcttcttgcatccaggtttccatcttggttcagtgcagttctcgggggacac 1281 | ||| ||||| | ||| ||||||| ||||||||||| ||||||||| || | || Sbjct: 1313 tgcatatggcttatcgcagccaggttcccatcttggtttgatgcagttcttggcgaacgg 1372 Query: 1282 tataatgactgggaagttgagttctataggctctacaacatggaaagcacaatggacttt 1341 || ||| |||| ||| ||||||| ||||| | || |||||||||||||||||||| ||| Sbjct: 1373 tacaatagctggaaagatgagttcgataggttgtataacatggaaagcacaatggagttt 1432 Query: 1342 gatcttggatggagtgacatggtgagctgctatggattgcatggaaataggcacattgct 1401 |||||||| |||||||||||| ||| | |||||||| | ||||| ||| ||||||||||| Sbjct: 1433 gatcttgggtggagtgacatgatgaacagctatggactacatgggaatgggcacattgct 1492 Query: 1402 agcctgtttgcatcacggaacctttgggcatcgccatatttgagaggacattttttggca 1461 || |||||||||||||| | || ||||||| |||||||||||||| || ||||| ||| Sbjct: 1493 agtctgtttgcatcacgaactctctgggcattaccatatttgagagggcagtttttcgca 1552 Query: 1462 gg 1463 || Sbjct: 1553 gg 1554 Score = 182 bits (92), Expect = 4e-42 Identities = 214/255 (83%), Gaps = 6/255 (2%) Strand = Plus / Plus Query: 280 gggcagcggttcctgacacacgaagcggcgtacgagctctacagcgggttcgcaaagcag 339 |||||| |||||| ||| ||||| |||||| |||||||||||||||||||||| | || | Sbjct: 350 gggcagaggttcccgacgcacgacgcggcgcacgagctctacagcgggttcgcgaggcgg 409 Query: 340 tgcgggttctcgatccggcggcaccgcacggaggggaaggatggcgtgggcaaggggctg 399 |||||||||||||||| || ||||| |||||||||||||| || ||||| | ||| ||| Sbjct: 410 cgcgggttctcgatccgccgccaccggacggaggggaaggacggggtggggaggggcctg 469 Query: 400 acccggcggtacttcgtgtgccaccgcgccggcaacacgccggcgaagcccttcgacgac 459 || || |||||||||||||||||||||| || ||| |||||||||||||||||| || | Sbjct: 470 acgaggaggtacttcgtgtgccaccgcgctgggaacccgccggcgaagcccttcgccgcc 529 Query: 460 ggcgc------gaagcagcagaggaacaggaagtcctcccgctgcgggtgccaggcgtac 513 ||||| | || |||||||||| || ||||||||||||||||||| |||||||| Sbjct: 530 ggcgccggcgacaggccgcagaggaaccggcggtcctcccgctgcgggtgcaaggcgtac 589 Query: 514 ctacgcattggcagg 528 | ||||| |||||| Sbjct: 590 atgcgcatcggcagg 604 Score = 170 bits (86), Expect = 2e-38 Identities = 265/324 (81%), Gaps = 3/324 (0%) Strand = Plus / Plus Query: 1630 ctcaagacagcagctccagtggaaggacatgctgctgctgttttcaccccatacgcgttc 1689 |||||||| ||| ||||| ||||| | ||||| ||||| ||| |||| || || || || Sbjct: 1724 ctcaagactgcaactccaatggaaaggcatgcggctgcagttctcactccttatgccatc 1783 Query: 1690 tgtaagctacaggatgagcttgtgggggctgcccattatgcatacttccacttggaaggg 1749 | ||||||||| ||||||||||| | |||| || ||||||| ||||||||||||||| Sbjct: 1784 tctaagctacaagatgagcttgttgtggcttgtcaatatgcatcattccacttggaaggg 1843 Query: 1750 aatgcttatcttgtccggcaccataccacgacagatggcggt---tgcaatgtcacatgg 1806 |||| | ||| ||||| || ||||||| |||||| | |||| |||||||| |||||| Sbjct: 1844 aatgtctttctggtccgtcatcataccaagacagaagacggtgggtgcaatgtgacatgg 1903 Query: 1807 aaccaaaaggaagagctaatttcttgcagctgccaaatgtttgaatcatcagggatcctc 1866 | ||||| || |||||||||||||||||| || | |||||||| || ||||||||||| Sbjct: 1904 agccaaagagaggagctaatttcttgcagcagcaatatgtttgagtctgcagggatcctc 1963 Query: 1867 tgccggcatgccctccgtttgctcacaacactaaactactttcagattccggaccattac 1926 |||||||||| ||||||| ||||| | || || |||||||||||||| ||||||||||| Sbjct: 1964 tgccggcatggcctccgtgtgctctcgaccctcaactactttcagatcccggaccattat 2023 Query: 1927 gttcctgtccgatggcgtagaacc 1950 | ||| ||||||||||||||| Sbjct: 2024 ctccctcctcgatggcgtagaacc 2047 Score = 71.9 bits (36), Expect = 1e-08 Identities = 45/48 (93%) Strand = Plus / Plus Query: 549 ggagtggcgggtcacggggttctctaaccaccacaaccatgagctcct 596 |||||||||||||||||| ||||| |||||||||||||| |||||||| Sbjct: 643 ggagtggcgggtcacgggcttctccaaccaccacaaccacgagctcct 690 Score = 65.9 bits (33), Expect = 7e-07 Identities = 57/65 (87%) Strand = Plus / Plus Query: 2071 cggatggatctcgcgacacaggaggtctctgtcctgctgtcccggataaagcagcaacct 2130 ||||||||| ||||||| | ||||||||||| |||| |||| ||||| | |||||||||| Sbjct: 2171 cggatggatatcgcgacgcgggaggtctctgccctgttgtcgcggatgaggcagcaacct 2230 Query: 2131 gttgt 2135 ||||| Sbjct: 2231 gttgt 2235 Score = 56.0 bits (28), Expect = 7e-04 Identities = 55/64 (85%) Strand = Plus / Plus Query: 2566 ggatggatctcgcgacacaggaggtctctgtcctgctgtcccggacaaggcagctacctg 2625 |||||||| ||||||| | ||||||||||| |||| |||| |||| ||||||| ||||| Sbjct: 2172 ggatggatatcgcgacgcgggaggtctctgccctgttgtcgcggatgaggcagcaacctg 2231 Query: 2626 ttgt 2629 |||| Sbjct: 2232 ttgt 2235
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 216 bits (109), Expect = 3e-52 Identities = 295/357 (82%) Strand = Plus / Plus Query: 1107 acaggtgtttcttaacttcatgaacagaaaagcccctcaaacaatattgactgatcaaaa 1166 |||||| ||||| ||||||||||||||||| || || | ||||||||||| ||| |||| Sbjct: 22083687 acaggtatttctcaacttcatgaacagaaaggctccgctgacaatattgacggatgaaaa 22083746 Query: 1167 taagtatctcaaagaagcagttcaaaaggagctaccaaacacaaagcatgccttctccat 1226 || ||| ||||| |||||| || |||||||||| ||| ||||||||| ||| ||| ||| Sbjct: 22083747 tatgtacctcaaggaagcaattgaaaaggagcttccaggcacaaagcaagccctctgcat 22083806 Query: 1227 cgggcttcttgcatccaggtttccatcttggttcagtgcagttctcgggggacactataa 1286 ||||| | ||| ||||||| ||||||||||| ||||||||| || | || || || Sbjct: 22083807 atggcttatcgcagccaggttcccatcttggtttgatgcagttcttggcgaacggtacaa 22083866 Query: 1287 tgactgggaagttgagttctataggctctacaacatggaaagcacaatggactttgatct 1346 | |||| ||| ||||||| ||||| | || |||||||||||||||||||| |||||||| Sbjct: 22083867 tagctggaaagatgagttcgataggttgtataacatggaaagcacaatggagtttgatct 22083926 Query: 1347 tggatggagtgacatggtgagctgctatggattgcatggaaataggcacattgctagcct 1406 ||| |||||||||||| ||| | |||||||| | ||||| ||| ||||||||||||| || Sbjct: 22083927 tgggtggagtgacatgatgaacagctatggactacatgggaatgggcacattgctagtct 22083986 Query: 1407 gtttgcatcacggaacctttgggcatcgccatatttgagaggacattttttggcagg 1463 |||||||||||| | || ||||||| |||||||||||||| || ||||| ||||| Sbjct: 22083987 gtttgcatcacgaactctctgggcattaccatatttgagagggcagtttttcgcagg 22084043 Score = 186 bits (94), Expect = 3e-43 Identities = 267/324 (82%), Gaps = 3/324 (0%) Strand = Plus / Plus Query: 1630 ctcaagacagcagctccagtggaaggacatgctgctgctgttttcaccccatacgcgttc 1689 |||||||| ||| ||||| ||||| | ||||| ||||| ||| |||| || || || ||| Sbjct: 22084429 ctcaagactgcaactccaatggaaaggcatgcggctgcagttctcactccttatgccttc 22084488 Query: 1690 tgtaagctacaggatgagcttgtgggggctgcccattatgcatacttccacttggaaggg 1749 | ||||||||| ||||||||||| | |||| || ||||||| ||||||||||||||| Sbjct: 22084489 tctaagctacaagatgagcttgttgtggcttgtcaatatgcatcattccacttggaaggg 22084548 Query: 1750 aatgcttatcttgtccggcaccataccacgacagatggcggt---tgcaatgtcacatgg 1806 |||| | ||| ||||| || ||||||| |||||| | |||| |||||||| |||||| Sbjct: 22084549 aatgtctttctggtccgtcatcataccaagacagaagacggtgggtgcaatgtgacatgg 22084608 Query: 1807 aaccaaaaggaagagctaatttcttgcagctgccaaatgtttgaatcatcagggatcctc 1866 | ||||| || ||||||||||||||||||||| | |||||||| || ||||||||||| Sbjct: 22084609 agccaaagagaggagctaatttcttgcagctgcaatatgtttgagtctgcagggatcctc 22084668 Query: 1867 tgccggcatgccctccgtttgctcacaacactaaactactttcagattccggaccattac 1926 |||||||||| ||||||| ||||| | || || |||||||||||||| ||||||||||| Sbjct: 22084669 tgccggcatggcctccgtgtgctctcgaccctcaactactttcagatcccggaccattat 22084728 Query: 1927 gttcctgtccgatggcgtagaacc 1950 | ||| ||||||||||||||| Sbjct: 22084729 ctccctcctcgatggcgtagaacc 22084752 Score = 184 bits (93), Expect = 1e-42 Identities = 347/431 (80%), Gaps = 3/431 (0%) Strand = Plus / Plus Query: 682 gggatctctgtgcagcagatgatgaggataatggagctggagaagtgcgtccagccaggg 741 |||||||| |||||||||||||||||||| ||||||||||||| | ||||| |||| || Sbjct: 22083149 gggatctccgtgcagcagatgatgaggatcatggagctggagaggcgcgtcgagccgggc 22083208 Query: 742 actctcccatttactgagaaggatgtgagaaatctcatacagtccttcaggaggttcgag 801 | ||| || || || |||||||||||||| || ||||| ||||| | ||||| || || Sbjct: 22083209 aatctgcccttcacagagaaggatgtgaggaacctcatccagtcgtgcaggaagtctga- 22083267 Query: 802 catcaggaggagagtgttgacctgcttcagatgtgcagaaatgttaaggagaaggatccc 861 |||||||||||| || || ||| | | |||||||||| || |||||||||| ||| Sbjct: 22083268 --tcaggaggagagcgtcgatctgatcaaaatgtgcagaagatttcaggagaaggacccc 22083325 Query: 862 aatttcaggtacgacttcaccaaagatgcgaacaactgccttgagaacatcgcctggtca 921 |||||| ||| || |||||||||| |||| |||| || | |||||| | |||||||| Sbjct: 22083326 gatttcaagtatgaattcaccaaaggcgcgagcaaccgcgtcgagaacgttgcctggtcg 22083385 Query: 922 tacgcatcatcgattcagtcttatgaggtatttggtgatgctgttgtgtttgacaccact 981 | ||||| ||| ||||||| |||||| | ||||||||||||||||| || |||| || Sbjct: 22083386 tttgcatcgtcggttcagtcgtatgagatgtttggtgatgctgttgtattcaacacgaca 22083445 Query: 982 catcggctaatttctattgacatggcactgggtatttggattggaatgaacaatcatggg 1041 |||||| | | || | |||||| || ||||||||| ||||| |||||||||||||| Sbjct: 22083446 catcggttgcctgctctggacatgctgcttggtatttgggttggattgaacaatcatggg 22083505 Query: 1042 atgccttgcttcttcagttgcgcacttctgagggaagaaaatctgcaatccttcacatgg 1101 |||||||||||||| ||||||| |||| ||||| |||| ||||||||||| ||||| Sbjct: 22083506 atgccttgcttctttggttgcgcttttctaagggaggaaagtctgcaatcctatgcatgg 22083565 Query: 1102 gcattacaggt 1112 |||||| |||| Sbjct: 22083566 gcattaaaggt 22083576 Score = 182 bits (92), Expect = 4e-42 Identities = 214/255 (83%), Gaps = 6/255 (2%) Strand = Plus / Plus Query: 280 gggcagcggttcctgacacacgaagcggcgtacgagctctacagcgggttcgcaaagcag 339 |||||| |||||| ||| ||||| |||||| |||||||||||||||||||||| | || | Sbjct: 22082723 gggcagaggttcccgacgcacgacgcggcgcacgagctctacagcgggttcgcgaggcgg 22082782 Query: 340 tgcgggttctcgatccggcggcaccgcacggaggggaaggatggcgtgggcaaggggctg 399 |||||||||||||||| || ||||| |||||||||||||| || ||||| | ||| ||| Sbjct: 22082783 cgcgggttctcgatccgccgccaccggacggaggggaaggacggggtggggaggggcctg 22082842 Query: 400 acccggcggtacttcgtgtgccaccgcgccggcaacacgccggcgaagcccttcgacgac 459 || || |||||||||||||||||||||| || ||| |||||||||||||||||| || | Sbjct: 22082843 acgaggaggtacttcgtgtgccaccgcgctgggaacccgccggcgaagcccttcgccgcc 22082902 Query: 460 ggcgc------gaagcagcagaggaacaggaagtcctcccgctgcgggtgccaggcgtac 513 ||||| | || |||||||||| || ||||||||||||||||||| |||||||| Sbjct: 22082903 ggcgccggcgacaggccgcagaggaaccggcggtcctcccgctgcgggtgcaaggcgtac 22082962 Query: 514 ctacgcattggcagg 528 | ||||| |||||| Sbjct: 22082963 atgcgcatcggcagg 22082977 Score = 71.9 bits (36), Expect = 1e-08 Identities = 45/48 (93%) Strand = Plus / Plus Query: 549 ggagtggcgggtcacggggttctctaaccaccacaaccatgagctcct 596 |||||||||||||||||| ||||| |||||||||||||| |||||||| Sbjct: 22083016 ggagtggcgggtcacgggcttctccaaccaccacaaccacgagctcct 22083063 Score = 65.9 bits (33), Expect = 7e-07 Identities = 57/65 (87%) Strand = Plus / Plus Query: 2071 cggatggatctcgcgacacaggaggtctctgtcctgctgtcccggataaagcagcaacct 2130 ||||||||| ||||||| | ||||||||||| |||| |||| ||||| | |||||||||| Sbjct: 22084876 cggatggatatcgcgacgcgggaggtctctgccctgttgtcgcggatgaggcagcaacct 22084935 Query: 2131 gttgt 2135 ||||| Sbjct: 22084936 gttgt 22084940 Score = 56.0 bits (28), Expect = 7e-04 Identities = 55/64 (85%) Strand = Plus / Plus Query: 2566 ggatggatctcgcgacacaggaggtctctgtcctgctgtcccggacaaggcagctacctg 2625 |||||||| ||||||| | ||||||||||| |||| |||| |||| ||||||| ||||| Sbjct: 22084877 ggatggatatcgcgacgcgggaggtctctgccctgttgtcgcggatgaggcagcaacctg 22084936 Query: 2626 ttgt 2629 |||| Sbjct: 22084937 ttgt 22084940
>emb|BX548155.1|OSJN00293 Oryza sativa genomic DNA, chromosome 4, BAC clone: P0041A24, complete sequence Length = 50879 Score = 216 bits (109), Expect = 3e-52 Identities = 295/357 (82%) Strand = Plus / Plus Query: 1107 acaggtgtttcttaacttcatgaacagaaaagcccctcaaacaatattgactgatcaaaa 1166 |||||| ||||| ||||||||||||||||| || || | ||||||||||| ||| |||| Sbjct: 28379 acaggtatttctcaacttcatgaacagaaaggctccgctgacaatattgacggatgaaaa 28438 Query: 1167 taagtatctcaaagaagcagttcaaaaggagctaccaaacacaaagcatgccttctccat 1226 || ||| ||||| |||||| || |||||||||| ||| ||||||||| ||| ||| ||| Sbjct: 28439 tatgtacctcaaggaagcaattgaaaaggagcttccaggcacaaagcaagccctctgcat 28498 Query: 1227 cgggcttcttgcatccaggtttccatcttggttcagtgcagttctcgggggacactataa 1286 ||||| | ||| ||||||| ||||||||||| ||||||||| || | || || || Sbjct: 28499 atggcttatcgcagccaggttcccatcttggtttgatgcagttcttggcgaacggtacaa 28558 Query: 1287 tgactgggaagttgagttctataggctctacaacatggaaagcacaatggactttgatct 1346 | |||| ||| ||||||| ||||| | || |||||||||||||||||||| |||||||| Sbjct: 28559 tagctggaaagatgagttcgataggttgtataacatggaaagcacaatggagtttgatct 28618 Query: 1347 tggatggagtgacatggtgagctgctatggattgcatggaaataggcacattgctagcct 1406 ||| |||||||||||| ||| | |||||||| | ||||| ||| ||||||||||||| || Sbjct: 28619 tgggtggagtgacatgatgaacagctatggactacatgggaatgggcacattgctagtct 28678 Query: 1407 gtttgcatcacggaacctttgggcatcgccatatttgagaggacattttttggcagg 1463 |||||||||||| | || ||||||| |||||||||||||| || ||||| ||||| Sbjct: 28679 gtttgcatcacgaactctctgggcattaccatatttgagagggcagtttttcgcagg 28735 Score = 186 bits (94), Expect = 3e-43 Identities = 267/324 (82%), Gaps = 3/324 (0%) Strand = Plus / Plus Query: 1630 ctcaagacagcagctccagtggaaggacatgctgctgctgttttcaccccatacgcgttc 1689 |||||||| ||| ||||| ||||| | ||||| ||||| ||| |||| || || || ||| Sbjct: 29121 ctcaagactgcaactccaatggaaaggcatgcggctgcagttctcactccttatgccttc 29180 Query: 1690 tgtaagctacaggatgagcttgtgggggctgcccattatgcatacttccacttggaaggg 1749 | ||||||||| ||||||||||| | |||| || ||||||| ||||||||||||||| Sbjct: 29181 tctaagctacaagatgagcttgttgtggcttgtcaatatgcatcattccacttggaaggg 29240 Query: 1750 aatgcttatcttgtccggcaccataccacgacagatggcggt---tgcaatgtcacatgg 1806 |||| | ||| ||||| || ||||||| |||||| | |||| |||||||| |||||| Sbjct: 29241 aatgtctttctggtccgtcatcataccaagacagaagacggtgggtgcaatgtgacatgg 29300 Query: 1807 aaccaaaaggaagagctaatttcttgcagctgccaaatgtttgaatcatcagggatcctc 1866 | ||||| || ||||||||||||||||||||| | |||||||| || ||||||||||| Sbjct: 29301 agccaaagagaggagctaatttcttgcagctgcaatatgtttgagtctgcagggatcctc 29360 Query: 1867 tgccggcatgccctccgtttgctcacaacactaaactactttcagattccggaccattac 1926 |||||||||| ||||||| ||||| | || || |||||||||||||| ||||||||||| Sbjct: 29361 tgccggcatggcctccgtgtgctctcgaccctcaactactttcagatcccggaccattat 29420 Query: 1927 gttcctgtccgatggcgtagaacc 1950 | ||| ||||||||||||||| Sbjct: 29421 ctccctcctcgatggcgtagaacc 29444 Score = 184 bits (93), Expect = 1e-42 Identities = 347/431 (80%), Gaps = 3/431 (0%) Strand = Plus / Plus Query: 682 gggatctctgtgcagcagatgatgaggataatggagctggagaagtgcgtccagccaggg 741 |||||||| |||||||||||||||||||| ||||||||||||| | ||||| |||| || Sbjct: 27841 gggatctccgtgcagcagatgatgaggatcatggagctggagaggcgcgtcgagccgggc 27900 Query: 742 actctcccatttactgagaaggatgtgagaaatctcatacagtccttcaggaggttcgag 801 | ||| || || || |||||||||||||| || ||||| ||||| | ||||| || || Sbjct: 27901 aatctgcccttcacagagaaggatgtgaggaacctcatccagtcgtgcaggaagtctga- 27959 Query: 802 catcaggaggagagtgttgacctgcttcagatgtgcagaaatgttaaggagaaggatccc 861 |||||||||||| || || ||| | | |||||||||| || |||||||||| ||| Sbjct: 27960 --tcaggaggagagcgtcgatctgatcaaaatgtgcagaagatttcaggagaaggacccc 28017 Query: 862 aatttcaggtacgacttcaccaaagatgcgaacaactgccttgagaacatcgcctggtca 921 |||||| ||| || |||||||||| |||| |||| || | |||||| | |||||||| Sbjct: 28018 gatttcaagtatgaattcaccaaaggcgcgagcaaccgcgtcgagaacgttgcctggtcg 28077 Query: 922 tacgcatcatcgattcagtcttatgaggtatttggtgatgctgttgtgtttgacaccact 981 | ||||| ||| ||||||| |||||| | ||||||||||||||||| || |||| || Sbjct: 28078 tttgcatcgtcggttcagtcgtatgagatgtttggtgatgctgttgtattcaacacgaca 28137 Query: 982 catcggctaatttctattgacatggcactgggtatttggattggaatgaacaatcatggg 1041 |||||| | | || | |||||| || ||||||||| ||||| |||||||||||||| Sbjct: 28138 catcggttgcctgctctggacatgctgcttggtatttgggttggattgaacaatcatggg 28197 Query: 1042 atgccttgcttcttcagttgcgcacttctgagggaagaaaatctgcaatccttcacatgg 1101 |||||||||||||| ||||||| |||| ||||| |||| ||||||||||| ||||| Sbjct: 28198 atgccttgcttctttggttgcgcttttctaagggaggaaagtctgcaatcctatgcatgg 28257 Query: 1102 gcattacaggt 1112 |||||| |||| Sbjct: 28258 gcattaaaggt 28268 Score = 182 bits (92), Expect = 4e-42 Identities = 214/255 (83%), Gaps = 6/255 (2%) Strand = Plus / Plus Query: 280 gggcagcggttcctgacacacgaagcggcgtacgagctctacagcgggttcgcaaagcag 339 |||||| |||||| ||| ||||| |||||| |||||||||||||||||||||| | || | Sbjct: 27415 gggcagaggttcccgacgcacgacgcggcgcacgagctctacagcgggttcgcgaggcgg 27474 Query: 340 tgcgggttctcgatccggcggcaccgcacggaggggaaggatggcgtgggcaaggggctg 399 |||||||||||||||| || ||||| |||||||||||||| || ||||| | ||| ||| Sbjct: 27475 cgcgggttctcgatccgccgccaccggacggaggggaaggacggggtggggaggggcctg 27534 Query: 400 acccggcggtacttcgtgtgccaccgcgccggcaacacgccggcgaagcccttcgacgac 459 || || |||||||||||||||||||||| || ||| |||||||||||||||||| || | Sbjct: 27535 acgaggaggtacttcgtgtgccaccgcgctgggaacccgccggcgaagcccttcgccgcc 27594 Query: 460 ggcgc------gaagcagcagaggaacaggaagtcctcccgctgcgggtgccaggcgtac 513 ||||| | || |||||||||| || ||||||||||||||||||| |||||||| Sbjct: 27595 ggcgccggcgacaggccgcagaggaaccggcggtcctcccgctgcgggtgcaaggcgtac 27654 Query: 514 ctacgcattggcagg 528 | ||||| |||||| Sbjct: 27655 atgcgcatcggcagg 27669 Score = 71.9 bits (36), Expect = 1e-08 Identities = 45/48 (93%) Strand = Plus / Plus Query: 549 ggagtggcgggtcacggggttctctaaccaccacaaccatgagctcct 596 |||||||||||||||||| ||||| |||||||||||||| |||||||| Sbjct: 27708 ggagtggcgggtcacgggcttctccaaccaccacaaccacgagctcct 27755 Score = 65.9 bits (33), Expect = 7e-07 Identities = 57/65 (87%) Strand = Plus / Plus Query: 2071 cggatggatctcgcgacacaggaggtctctgtcctgctgtcccggataaagcagcaacct 2130 ||||||||| ||||||| | ||||||||||| |||| |||| ||||| | |||||||||| Sbjct: 29568 cggatggatatcgcgacgcgggaggtctctgccctgttgtcgcggatgaggcagcaacct 29627 Query: 2131 gttgt 2135 ||||| Sbjct: 29628 gttgt 29632 Score = 56.0 bits (28), Expect = 7e-04 Identities = 55/64 (85%) Strand = Plus / Plus Query: 2566 ggatggatctcgcgacacaggaggtctctgtcctgctgtcccggacaaggcagctacctg 2625 |||||||| ||||||| | ||||||||||| |||| |||| |||| ||||||| ||||| Sbjct: 29569 ggatggatatcgcgacgcgggaggtctctgccctgttgtcgcggatgaggcagcaacctg 29628 Query: 2626 ttgt 2629 |||| Sbjct: 29629 ttgt 29632
>gb|AC191599.4| Medicago truncatula chromosome 2 BAC clone mth2-181i5, complete sequence Length = 121604 Score = 58.0 bits (29), Expect = 2e-04 Identities = 65/77 (84%) Strand = Plus / Plus Query: 901 cttgagaacatcgcctggtcatacgcatcatcgattcagtcttatgaggtatttggtgat 960 |||||| |||| || ||||| |||| ||||| ||||| || || ||||||||||||||| Sbjct: 73838 cttgagtacattgcatggtcctacgggtcatcaattcaatcatacgaggtatttggtgat 73897 Query: 961 gctgttgtgtttgacac 977 ||||| || |||||||| Sbjct: 73898 gctgtggtttttgacac 73914
>ref|NM_100898.2| Arabidopsis thaliana unknown protein (AT1G10240) mRNA, complete cds Length = 2295 Score = 46.1 bits (23), Expect = 0.67 Identities = 41/47 (87%) Strand = Plus / Plus Query: 694 cagcagatgatgaggataatggagctggagaagtgcgtccagccagg 740 ||||||||||||||| | ||||||| |||||||| ||| ||||||| Sbjct: 659 cagcagatgatgaggctcttggagcttgagaagtgtgtcgagccagg 705
>gb|BC060756.1| Xenopus laevis hypothetical protein MGC69106, mRNA (cDNA clone MGC:69106 IMAGE:5047476), complete cds Length = 4141 Score = 46.1 bits (23), Expect = 0.67 Identities = 26/27 (96%) Strand = Plus / Plus Query: 1645 ccagtggaaggacatgctgctgctgtt 1671 |||||||||||||||||||||| |||| Sbjct: 3119 ccagtggaaggacatgctgctggtgtt 3145
>gb|BT000486.1| Arabidopsis thaliana unknown protein (At1g10240/F14N23_12) mRNA, complete cds Length = 2043 Score = 46.1 bits (23), Expect = 0.67 Identities = 41/47 (87%) Strand = Plus / Plus Query: 694 cagcagatgatgaggataatggagctggagaagtgcgtccagccagg 740 ||||||||||||||| | ||||||| |||||||| ||| ||||||| Sbjct: 562 cagcagatgatgaggctcttggagcttgagaagtgtgtcgagccagg 608
>gb|AF424595.1|AF424595 Arabidopsis thaliana At1g10240/F14N23_12 mRNA, complete cds Length = 2295 Score = 46.1 bits (23), Expect = 0.67 Identities = 41/47 (87%) Strand = Plus / Plus Query: 694 cagcagatgatgaggataatggagctggagaagtgcgtccagccagg 740 ||||||||||||||| | ||||||| |||||||| ||| ||||||| Sbjct: 659 cagcagatgatgaggctcttggagcttgagaagtgtgtcgagccagg 705
>gb|AC005489.1|AC005489 Genomic sequence for Arabidopsis thaliana BAC F14N23 from Chromosome 1, complete sequence Length = 100746 Score = 46.1 bits (23), Expect = 0.67 Identities = 41/47 (87%) Strand = Plus / Minus Query: 694 cagcagatgatgaggataatggagctggagaagtgcgtccagccagg 740 ||||||||||||||| | ||||||| |||||||| ||| ||||||| Sbjct: 39070 cagcagatgatgaggctcttggagcttgagaagtgtgtcgagccagg 39024
>gb|AC116515.11| Mus musculus chromosome 7, clone RP24-331B9, complete sequence Length = 133179 Score = 44.1 bits (22), Expect = 2.7 Identities = 22/22 (100%) Strand = Plus / Minus Query: 188 gcggggaggagggagaagggga 209 |||||||||||||||||||||| Sbjct: 81620 gcggggaggagggagaagggga 81599
>ref|NM_064271.1| Caenorhabditis elegans Serpentine Receptor, class H family member (srh-61) (srh-61) mRNA, complete cds Length = 1008 Score = 44.1 bits (22), Expect = 2.7 Identities = 25/26 (96%) Strand = Plus / Plus Query: 1431 atcgccatatttgagaggacattttt 1456 |||||||||||||||| ||||||||| Sbjct: 643 atcgccatatttgagatgacattttt 668
>emb|Z81124.1|CET21B4 Caenorhabditis elegans Cosmid T21B4, complete sequence Length = 37797 Score = 44.1 bits (22), Expect = 2.7 Identities = 25/26 (96%) Strand = Plus / Minus Query: 1431 atcgccatatttgagaggacattttt 1456 |||||||||||||||| ||||||||| Sbjct: 25231 atcgccatatttgagatgacattttt 25206
>emb|AL445564.1|MPULM02 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 2/3 Length = 321250 Score = 44.1 bits (22), Expect = 2.7 Identities = 22/22 (100%) Strand = Plus / Minus Query: 2291 attaatttattgtagaaactta 2312 |||||||||||||||||||||| Sbjct: 237962 attaatttattgtagaaactta 237941
>gb|AF030027.1|AF030027 Equine herpesvirus 4 strain NS80567, complete genome Length = 145597 Score = 44.1 bits (22), Expect = 2.7 Identities = 25/26 (96%) Strand = Plus / Plus Query: 2542 gtgaagcaggcaagtcggaggaatgg 2567 ||||||||||| |||||||||||||| Sbjct: 88899 gtgaagcaggcgagtcggaggaatgg 88924
>emb|AL512346.41| Mouse DNA sequence from clone RP23-322E15 on chromosome X, complete sequence Length = 227395 Score = 44.1 bits (22), Expect = 2.7 Identities = 22/22 (100%) Strand = Plus / Plus Query: 2269 tttatgatgttgtccttatttt 2290 |||||||||||||||||||||| Sbjct: 149218 tttatgatgttgtccttatttt 149239
>emb|AL671229.11| Mouse DNA sequence from clone RP23-93N10 on chromosome 4, complete sequence Length = 237082 Score = 44.1 bits (22), Expect = 2.7 Identities = 22/22 (100%) Strand = Plus / Plus Query: 2280 gtccttattttattaatttatt 2301 |||||||||||||||||||||| Sbjct: 75046 gtccttattttattaatttatt 75067 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 503,267,129 Number of extensions: 27733757 Number of successful extensions: 156810 Number of sequences better than 10.0: 17 Number of HSP's gapped: 156798 Number of HSP's successfully gapped: 51 Length of query: 2745 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 2722 Effective length of database: 18,503,978,556 Effective search space: 50367829629432 Effective search space used: 50367829629432 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 15 (30.2 bits)
