ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf2m21 |
|---|---|
| Clone Library Name | barley_pub |
>Q60560:SMBP2_MESAU DNA-binding protein SMUBP-2 - Mesocricetus auratus (Golden hamster)| Length = 989 Score = 359 bits (921), Expect = 5e-98 Identities = 255/693 (36%), Positives = 368/693 (53%), Gaps = 15/693 (2%) Frame = +1 Query: 928 IEDFVRHMSDLLRIERDAELEFTQEELNATTMLDNNSKPSKPVEYLVTHGQAQQEQCDTI 1107 +E FV +LL +ERDAE+E + H ++ Q + Sbjct: 6 VESFVAQQLELLELERDAEVEERRSWQE--------------------HSSLKELQSRGV 45 Query: 1108 C--NLSVISSSTGLGGLHLVLF---RIEGEHKLPPTTLSPGDMVCVRTCNSRGEGATSCM 1272 C L V S TGL G LV F ++ LP + + GD+V + N + AT Sbjct: 46 CLLKLQVSSQCTGLYGQRLVTFEPRKLGPVVVLPSNSFTSGDIVGLYDANESSQLAT--- 102 Query: 1273 QGFLYNLGEDGCSITVALESRHGDPTFSRLFGKSVRIDRIQGLADALTYERNLEALMLLQ 1452 G L + + S+TVA + H +L R+ LA+ +TY+R +ALM L+ Sbjct: 103 -GVLTRITQK--SVTVAFDESHD----FQLNLDRENTYRLLKLANDVTYKRLKKALMTLK 155 Query: 1453 RNGLLKSNASIDVVATLFGDGKDVMKMEQNCLIDWGESSLPDPRLSERYAFDDSQLRALS 1632 + +++ IDV L G E +P P A D SQ A+S Sbjct: 156 KYHSGPASSLIDV---LLGGSSPSPTTE-----------IP-PFTFYNTALDPSQKEAVS 200 Query: 1633 LGLNKKRPVLVIQGPPGTGKTVLLTELIVRAVRQGENVLVTAPSNAAVDNMVEKLSSTGL 1812 L +K V +I GPPGTGKT + E+I++AV+QG +L APSN AVDN+VE+L+ Sbjct: 201 FALAQKE-VAIIHGPPGTGKTTTVVEIILQAVKQGLKILCCAPSNVAVDNLVERLALCKK 259 Query: 1813 NIVRVGNPARISPSVTSKSLAEIV----NGRL-SQFRKELEXXXXXXXXXXXXCIEDDSL 1977 I+R+G+PAR+ S SL ++ N ++ + RK+++ +D Sbjct: 260 RILRLGHPARLLESAQQHSLDAVLARSDNAQIVADIRKDIDQVFGKNKKT-----QDKRE 314 Query: 1978 AAGIRQLLKQLGRDLEMKEKETIMEVLSDAQVVLSTNTGAADPLIRKI---GCFDLVIID 2148 + R +K L ++L+ +E+ I++ L+ A VVL+TNTGA+ K+ FD+V++D Sbjct: 315 KSNFRNEIKLLRKELKEREEAAIVQSLTAADVVLATNTGASSDGPLKLLPENHFDVVVVD 374 Query: 2149 EAGQGIEPSCWIPILQGKRCILAGDHCQLAPAILSRKALEGGLGKSMMERASLLHDGLLT 2328 E Q +E SCWIP+L+ +CILAGDH QL P +S KA GL +S+MER H Sbjct: 375 ECAQALEASCWIPLLKAPKCILAGDHRQLPPTTISHKAALAGLSRSLMERLVEKHGAGAV 434 Query: 2329 TRLTVQHRMHDSIASWASKEMYQGLLQSSHSVASHLLADSPVVKDTWITRCPLLLLDTRM 2508 LTVQ+RMH +I WAS+ MY G L + SVA HLL D P V DT T PLLL+DT Sbjct: 435 RMLTVQYRMHQAITRWASEAMYHGQLTAHPSVAGHLLKDLPGVADTEETSVPLLLIDT-- 492 Query: 2509 PYGILNADC-VEHLDPAGTGSFYNDGEADIVTQHVLNLVHCGVSPSEIAIQSPYIAQVQL 2685 A C + LD + S N GE +VT H+ LV GV +IA+ +PY QV L Sbjct: 493 ------AGCGLLELDEEDSQSKGNPGEVRLVTLHIQALVDAGVHAGDIAVIAPYNLQVDL 546 Query: 2686 LREKI-EEYPGLSGVEVSTVDSFQGREADAVVLSMVRSNPLGAVGFMGDSRLMNVAITRA 2862 LR+ + ++P L E+ +VD FQGRE +AV+L+ VRSN G VGF+ + R +NVA+TRA Sbjct: 547 LRQSLSNKHPEL---EIKSVDGFQGREKEAVILTFVRSNRKGEVGFLAEDRRINVAVTRA 603 Query: 2863 RRHVTVVCDTSTICHSTFLARLLRHIRRYGQVK 2961 RRHV V+CD+ T+ + FL L+ + +G+V+ Sbjct: 604 RRHVAVICDSRTVNNHAFLKTLVDYFTEHGEVR 636
>P40694:SMBP2_MOUSE DNA-binding protein SMUBP-2 - Mus musculus (Mouse)| Length = 993 Score = 355 bits (912), Expect = 6e-97 Identities = 253/693 (36%), Positives = 368/693 (53%), Gaps = 15/693 (2%) Frame = +1 Query: 928 IEDFVRHMSDLLRIERDAELEFTQEELNATTMLDNNSKPSKPVEYLVTHGQAQQEQCDTI 1107 +E FV LL +ERDAE+E + H ++ Q + Sbjct: 6 VESFVAQQLQLLELERDAEVEERRSWQE--------------------HSSLRELQSRGV 45 Query: 1108 C--NLSVISSSTGLGGLHLVLF---RIEGEHKLPPTTLSPGDMVCVRTCNSRGEGATSCM 1272 C L V S TGL G LV F + LP + + GD+V + N + AT Sbjct: 46 CLLKLQVSSQRTGLYGQRLVTFEPRKFGPAVVLPSNSFTSGDIVGLYDTNENSQLAT--- 102 Query: 1273 QGFLYNLGEDGCSITVALESRHGDPTFSRLFGKSVRIDRIQGLADALTYERNLEALMLLQ 1452 G L + + S+TVA + H +L R+ LA+ +TY+R +ALM L+ Sbjct: 103 -GVLTRITQK--SVTVAFDESHD----LQLNLDRENTYRLLKLANDVTYKRLKKALMTLK 155 Query: 1453 RNGLLKSNASIDVVATLFGDGKDVMKMEQNCLIDWGESSLPDPRLSERYAFDDSQLRALS 1632 + +++ ID+ L G ME +P P D SQ A+S Sbjct: 156 KYHSGPASSLIDI---LLGSSTPSPAME-----------IP-PLSFYNTTLDLSQKEAVS 200 Query: 1633 LGLNKKRPVLVIQGPPGTGKTVLLTELIVRAVRQGENVLVTAPSNAAVDNMVEKLSSTGL 1812 L +K + +I GPPGTGKT + E+I++AV+QG VL APSN AVDN+VE+L+ Sbjct: 201 FALAQKE-LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKK 259 Query: 1813 NIVRVGNPARISPSVTSKSLAEIV----NGRL-SQFRKELEXXXXXXXXXXXXCIEDDSL 1977 I+R+G+PAR+ SV SL ++ N ++ + R++++ +D Sbjct: 260 RILRLGHPARLLESVQHHSLDAVLARSDNAQIVADIRRDIDQVFGKNKKT-----QDKRE 314 Query: 1978 AAGIRQLLKQLGRDLEMKEKETIMEVLSDAQVVLSTNTGAADPLIRKI---GCFDLVIID 2148 R +K L ++L+ +E+ I++ L+ A VVL+TNTGA+ K+ FD+V++D Sbjct: 315 KGNFRSEIKLLRKELKEREEAAIVQSLTAADVVLATNTGASSDGPLKLLPEDYFDVVVVD 374 Query: 2149 EAGQGIEPSCWIPILQGKRCILAGDHCQLAPAILSRKALEGGLGKSMMERASLLHDGLLT 2328 E Q +E SCWIP+L+ +CILAGDH QL P +S +A GL +S+MER + H + Sbjct: 375 ECAQALEASCWIPLLKAPKCILAGDHRQLPPTTVSHRAALAGLSRSLMERLAEKHGAGVV 434 Query: 2329 TRLTVQHRMHDSIASWASKEMYQGLLQSSHSVASHLLADSPVVKDTWITRCPLLLLDTRM 2508 LTVQ+RMH +I WAS+ MY G S SVA HLL D P V DT TR PLLL+DT Sbjct: 435 RMLTVQYRMHQAIMCWASEAMYHGQFTSHPSVAGHLLKDLPGVTDTEETRVPLLLIDT-- 492 Query: 2509 PYGILNADC-VEHLDPAGTGSFYNDGEADIVTQHVLNLVHCGVSPSEIAIQSPYIAQVQL 2685 A C + L+ + S N GE +VT H+ LV GV +IA+ +PY QV L Sbjct: 493 ------AGCGLLELEEEDSQSKGNPGEVRLVTLHIQALVDAGVQAGDIAVIAPYNLQVDL 546 Query: 2686 LREKI-EEYPGLSGVEVSTVDSFQGREADAVVLSMVRSNPLGAVGFMGDSRLMNVAITRA 2862 LR+ + ++P L E+ +VD FQGRE +AV+L+ VRSN G VGF+ + R +NVA+TRA Sbjct: 547 LRQSLSNKHPEL---EIKSVDGFQGREKEAVLLTFVRSNRKGEVGFLAEDRRINVAVTRA 603 Query: 2863 RRHVTVVCDTSTICHSTFLARLLRHIRRYGQVK 2961 RRHV V+CD+ T+ + FL L+ + +G+V+ Sbjct: 604 RRHVAVICDSHTVNNHAFLETLVDYFTEHGEVR 636
>P38935:SMBP2_HUMAN DNA-binding protein SMUBP-2 - Homo sapiens (Human)| Length = 993 Score = 349 bits (895), Expect = 5e-95 Identities = 250/691 (36%), Positives = 366/691 (52%), Gaps = 13/691 (1%) Frame = +1 Query: 928 IEDFVRHMSDLLRIERDAELEFTQEELNATTMLDNNSKPSKPVEYLVTHGQAQQEQCDTI 1107 +E FV DLL +ERDAE+E + ++ + S+ + Sbjct: 6 VESFVTKQLDLLELERDAEVEERRSWQENISLKELQSRGV------------------CL 47 Query: 1108 CNLSVISSSTGLGGLHLVLF---RIEGEHKLPPTTLSPGDMVCVRTCNSRGEGATSCMQG 1278 L V S TGL G LV F R LP + + GD+V + + G + G Sbjct: 48 LKLQVSSQRTGLYGRLLVTFEPRRYGSAAALPSNSFTSGDIVGLYDAANEGSQLAT---G 104 Query: 1279 FLYNLGEDGCSITVALESRHGDPTFSRLFGKSVRIDRIQGLADALTYERNLEALMLLQRN 1458 L + + S+TVA + H D S S R+ + LA+ +TY R +AL+ L++ Sbjct: 105 ILTRVTQK--SVTVAFDESH-DFQLSLDRENSYRLLK---LANDVTYRRLKKALIALKK- 157 Query: 1459 GLLKSNASIDVVATLFGDGKDVMKMEQNCLIDWGESSLPDPRLSERYAFDDSQLRALSLG 1638 S + ++ LFG E + L + D SQ A+S Sbjct: 158 --YHSGPASSLIEVLFGRSAPSPASEIHPLTFFNT------------CLDTSQKEAVSFA 203 Query: 1639 LNKKRPVLVIQGPPGTGKTVLLTELIVRAVRQGENVLVTAPSNAAVDNMVEKLSSTGLNI 1818 L++K + +I GPPGTGKT + E+I++AV+QG VL APSN AVDN+VE+L+ I Sbjct: 204 LSQKE-LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKQRI 262 Query: 1819 VRVGNPARISPSVTSKSLAEIVNG-----RLSQFRKELEXXXXXXXXXXXXCIEDDSLAA 1983 +R+G+PAR+ SV SL ++ ++ RK+++ +D + Sbjct: 263 LRLGHPARLLESVQQHSLDAVLARSDSAQNVADIRKDIDQVFVKNKKT-----QDKREKS 317 Query: 1984 GIRQLLKQLGRDLEMKEKETIMEVLSDAQVVLSTNTGA-ADPLIRKI--GCFDLVIIDEA 2154 R +K L ++L+ +E+ ++E L+ A VVL+TNTGA AD ++ + FD+V+IDE Sbjct: 318 NFRNEIKLLRKELKEREEAAMLESLTSANVVLATNTGASADGPLKLLPESYFDVVVIDEC 377 Query: 2155 GQGIEPSCWIPILQGKRCILAGDHCQLAPAILSRKALEGGLGKSMMERASLLHDGLLTTR 2334 Q +E SCWIP+L+ ++CILAGDH QL P +S KA GL S+MER + + + Sbjct: 378 AQALEASCWIPLLKARKCILAGDHKQLPPTTVSHKAALAGLSLSLMERLAEEYGARVVRT 437 Query: 2335 LTVQHRMHDSIASWASKEMYQGLLQSSHSVASHLLADSPVVKDTWITRCPLLLLDTRMPY 2514 LTVQ+RMH +I WAS MY G + + SVA HLL D P V T T PLLL+DT Sbjct: 438 LTVQYRMHQAIMRWASDTMYLGQVTAHSSVARHLLRDLPGVAATEETGVPLLLVDT---- 493 Query: 2515 GILNADC-VEHLDPAGTGSFYNDGEADIVTQHVLNLVHCGVSPSEIAIQSPYIAQVQLLR 2691 A C + L+ S N GE +V+ H+ LV GV +IA+ SPY QV LLR Sbjct: 494 ----AGCGLFELEEEDEQSKGNPGEVRLVSLHIQALVDAGVPARDIAVVSPYNLQVDLLR 549 Query: 2692 EK-IEEYPGLSGVEVSTVDSFQGREADAVVLSMVRSNPLGAVGFMGDSRLMNVAITRARR 2868 + + +P L E+ +VD FQGRE +AV+LS VRSN G VGF+ + R +NVA+TRARR Sbjct: 550 QSLVHRHPEL---EIKSVDGFQGREKEAVILSFVRSNRKGEVGFLAEDRRINVAVTRARR 606 Query: 2869 HVTVVCDTSTICHSTFLARLLRHIRRYGQVK 2961 HV V+CD+ T+ + FL L+ + ++G+V+ Sbjct: 607 HVAVICDSRTVNNHAFLKTLVEYFTQHGEVR 637
>P34243:YKB7_YEAST Uncharacterized ATP-dependent helicase YKL017C - Saccharomyces| cerevisiae (Baker's yeast) Length = 683 Score = 210 bits (534), Expect = 4e-53 Identities = 155/460 (33%), Positives = 244/460 (53%), Gaps = 34/460 (7%) Frame = +1 Query: 1606 DDSQLRALSLGLNKKRPVLVIQGPPGTGKTVLLTELIVRAVRQG--ENVLVTAPSNAAVD 1779 +DSQ A++ +N + +I GPPGTGKT L ELI + + + E +L+ PSN +VD Sbjct: 209 NDSQKTAINFAINND--LTIIHGPPGTGKTFTLIELIQQLLIKNPEERILICGPSNISVD 266 Query: 1780 NMVEKLSSTGLN--IVRVGNPARISPSVTSKSLAEI--VNGRLSQFRKELEXXXXXXXXX 1947 ++E+L+ N ++R+G+PAR+ S SL + N + +E++ Sbjct: 267 TILERLTPLVPNNLLLRIGHPARLLDSNKRHSLDILSKKNTIVKDISQEID--------- 317 Query: 1948 XXXCIEDDSLAAGIRQL------LKQLGRDLEMKEKETIMEVLSDAQVVLSTNTGAA--- 2100 I+++ +Q +K L +DL+ +E +TI +++ +++V++T G++ Sbjct: 318 --KLIQENKKLKNYKQRKENWNEIKLLRKDLKKREFKTIKDLIIQSRIVVTTLHGSSSRE 375 Query: 2101 -------DPLIRKIGCFDLVIIDEAGQGIEPSCWIPIL----QGKRCILAGDHCQLAPAI 2247 DP FD +IIDE Q +EP CWIP++ Q + +LAGD+ QL P I Sbjct: 376 LCSLYRDDP---NFQLFDTLIIDEVSQAMEPQCWIPLIAHQNQFHKLVLAGDNKQLPPTI 432 Query: 2248 LSR--KALEGGLGKSMMER-ASLLHDGLLTTRLTVQHRMHDSIASWASKEMYQGLLQSSH 2418 + K + L ++ +R + + L VQ+RM+ I + S MY G L + Sbjct: 433 KTEDDKNVIHNLETTLFDRIIKIFPKRDMVKFLNVQYRMNQKIMEFPSHSMYNGKLLADA 492 Query: 2419 SVASHLLADSPVV-----KDTWITRCPLLLLDTRMPYGILNADCVEHLDPAGTGSFYNDG 2583 +VA+ LL D P V +D T+ PL+ DT+ AD + GS YN+G Sbjct: 493 TVANRLLIDLPTVDATPSEDDDDTKIPLIWYDTQGDEFQETAD-----EATILGSKYNEG 547 Query: 2584 EADIVTQHVLNLVHCGVSPSEIAIQSPYIAQVQLLREKIEEYPGLSGVEVSTVDSFQGRE 2763 E IV +H+ NL V + I + SPY AQV L++ I + L+ +E+STVD FQGRE Sbjct: 548 EIAIVKEHIENLRSFNVPENSIGVISPYNAQVSHLKKLIHDELKLTDIEISTVDGFQGRE 607 Query: 2764 ADAVVLSMVRSNPLGAVGFMGDSRLMNVAITRARRHVTVV 2883 D ++LS+VRSN VGF+ + R +NVA+TR RR + VV Sbjct: 608 KDVIILSLVRSNEKFEVGFLKEERRLNVAMTRPRRQLVVV 647
>Q9HEH1:RENT1_NEUCR Regulator of nonsense transcripts 1 homolog - Neurospora crassa| Length = 1093 Score = 210 bits (534), Expect = 4e-53 Identities = 156/454 (34%), Positives = 232/454 (51%), Gaps = 10/454 (2%) Frame = +1 Query: 1612 SQLRALSLGLNKKRPVLVIQGPPGTGKTVLLTELIVRAVRQGEN-VLVTAPSNAAVDNMV 1788 SQ+ A+ L+ P+ +IQGPPGTGKTV +I + + VLV APSN AVD + Sbjct: 459 SQIAAIKQVLSN--PLSLIQGPPGTGKTVTSATIIYHLAKMSNSQVLVCAPSNVAVDQLC 516 Query: 1789 EKLSSTGLNIVRVGNPAR--ISPSVTSKSLAEIVNGRLSQFRKELEXXXXXXXXXXXXCI 1962 E++ TGL +VR+ +R + SV+ +L E V R++ KEL+ Sbjct: 517 ERIHRTGLKVVRLTAKSREDVESSVSFLALHEQV--RMNTTNKELDGLVKLKT------- 567 Query: 1963 EDDSLAAGIRQLLKQLGRDLEMKEKETIMEVLSDAQVVLSTNTGAADPLIRKIGCFDLVI 2142 E L++ + KQL R E E+L +A VV T GA DP + K+ F V+ Sbjct: 568 ETGELSSQDEKRFKQLTRQAER-------EILQNADVVCCTCVGAGDPRLSKMK-FRNVL 619 Query: 2143 IDEAGQGIEPSCWIPILQG-KRCILAGDHCQLAPAILSRKALEGGLGKSMMERASLLHDG 2319 IDE+ Q EP C IP++ G K+ +L GDH QL P I+++KA + GL +S+ ER L Sbjct: 620 IDESTQSAEPECMIPLVLGCKQVVLVGDHKQLGPVIMNKKAAKAGLNQSLFERLVKLQ-- 677 Query: 2320 LLTTRLTVQHRMHDSIASWASKEMYQGLLQSSHSVASHLLADSPVVKDTW-ITRCPLLLL 2496 RL VQ+RMH ++ + S Y+G LQ+ + A L D V W + P++ Sbjct: 678 FTPIRLKVQYRMHPCLSEFPSNMFYEGSLQNGVTAAERLRKD---VDFPWPVPETPMMFW 734 Query: 2497 DTRMPYGILNADCVEHLDPAGTGSFYNDGEADIVTQHVLNLVHCGVSPSEIAIQSPYIAQ 2676 E + +GT S+ N EA V + V GV P++I + +PY Q Sbjct: 735 SNLGN---------EEISASGT-SYLNRTEAANVEKIVTRFFKAGVKPADIGVITPYEGQ 784 Query: 2677 VQLLREKIE-----EYPGLSGVEVSTVDSFQGREADAVVLSMVRSNPLGAVGFMGDSRLM 2841 + ++ + VEV++VD+FQGRE D +VLS VRSN +GF+ D R + Sbjct: 785 RSYIVNTMQNTGTFKKESYREVEVASVDAFQGREKDFIVLSCVRSNENQGIGFLSDPRRL 844 Query: 2842 NVAITRARRHVTVVCDTSTICHSTFLARLLRHIR 2943 NVA+TRA+ + ++ + +C LL H + Sbjct: 845 NVALTRAKYGLVIIGNPKVLCKHELWHHLLVHFK 878
>Q9EPU0:RENT1_MOUSE Regulator of nonsense transcripts 1 - Mus musculus (Mouse)| Length = 1124 Score = 209 bits (532), Expect = 7e-53 Identities = 159/469 (33%), Positives = 238/469 (50%), Gaps = 13/469 (2%) Frame = +1 Query: 1648 KRPVLVIQGPPGTGKTVLLTELIVRAVRQGEN-VLVTAPSNAAVDNMVEKLSSTGLNIVR 1824 +RP+ +IQGPPGTGKTV ++ RQG VLV APSN AVD + EK+ TGL +VR Sbjct: 490 QRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVR 549 Query: 1825 VGNPARISPSVTSKSLAEIVNGRLSQFRKELEXXXXXXXXXXXXCIEDDSLAAGIRQLLK 2004 + +R + LA R EL+ E L++ + + Sbjct: 550 LCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKD-------ETGELSSADEKRYR 602 Query: 2005 QLGRDLEMKEKETIMEVLSDAQVVLSTNTGAADPLIRKIGCFDLVIIDEAGQGIEPSCWI 2184 L R E E+L +A V+ T GA DP + K+ F ++IDE+ Q EP C + Sbjct: 603 ALKRTAER-------ELLMNADVICCTCVGAGDPRLAKMQ-FRSILIDESTQATEPECMV 654 Query: 2185 PILQG-KRCILAGDHCQLAPAILSRKALEGGLGKSMMERASLLHDGLLTTRLTVQHRMHD 2361 P++ G K+ IL GDHCQL P ++ +KA + GL +S+ ER +L G+ RL VQ+RMH Sbjct: 655 PVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL--GIRPIRLQVQYRMHP 712 Query: 2362 SIASWASKEMYQGLLQSSHSVASHLLADSPVVKDTWITRCPLLLLDTRMPYGILNADCVE 2541 +++++ S Y+G LQ+ + A VK + + P D M + + E Sbjct: 713 ALSAFPSNIFYEGSLQNGVTAADR-------VKKGFDFQWPQP--DKPMFFYVTQGQ--E 761 Query: 2542 HLDPAGTGSFYNDGEADIVTQHVLNLVHCGVSPSEIAIQSPYIAQVQLLREKIEEYPGLS 2721 + +GT S+ N EA V + L+ G P +I I +PY Q R + +Y S Sbjct: 762 EIASSGT-SYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQ----RSYLVQYMQFS 816 Query: 2722 G---------VEVSTVDSFQGREADAVVLSMVRSNPLGAVGFMGDSRLMNVAITRARRHV 2874 G VE+++VD+FQGRE D ++LS VR+N +GF+ D R +NVA+TRAR V Sbjct: 817 GSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGV 876 Query: 2875 TVVCDTSTICHSTFLARLLRHIRRYGQVKHVAPGSLDGV--SGLGFSQP 3015 +V + + LL + Y + K + G L+ + S + FS+P Sbjct: 877 IIVGNPKALSKQPLWNHLLSY---YKEQKALVEGPLNNLRESLMQFSKP 922
>Q92900:RENT1_HUMAN Regulator of nonsense transcripts 1 - Homo sapiens (Human)| Length = 1129 Score = 209 bits (532), Expect = 7e-53 Identities = 159/469 (33%), Positives = 238/469 (50%), Gaps = 13/469 (2%) Frame = +1 Query: 1648 KRPVLVIQGPPGTGKTVLLTELIVRAVRQGEN-VLVTAPSNAAVDNMVEKLSSTGLNIVR 1824 +RP+ +IQGPPGTGKTV ++ RQG VLV APSN AVD + EK+ TGL +VR Sbjct: 495 QRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVR 554 Query: 1825 VGNPARISPSVTSKSLAEIVNGRLSQFRKELEXXXXXXXXXXXXCIEDDSLAAGIRQLLK 2004 + +R + LA R EL+ E L++ + + Sbjct: 555 LCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKD-------ETGELSSADEKRYR 607 Query: 2005 QLGRDLEMKEKETIMEVLSDAQVVLSTNTGAADPLIRKIGCFDLVIIDEAGQGIEPSCWI 2184 L R E E+L +A V+ T GA DP + K+ F ++IDE+ Q EP C + Sbjct: 608 ALKRTAER-------ELLMNADVICCTCVGAGDPRLAKMQ-FRSILIDESTQATEPECMV 659 Query: 2185 PILQG-KRCILAGDHCQLAPAILSRKALEGGLGKSMMERASLLHDGLLTTRLTVQHRMHD 2361 P++ G K+ IL GDHCQL P ++ +KA + GL +S+ ER +L G+ RL VQ+RMH Sbjct: 660 PVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL--GIRPIRLQVQYRMHP 717 Query: 2362 SIASWASKEMYQGLLQSSHSVASHLLADSPVVKDTWITRCPLLLLDTRMPYGILNADCVE 2541 +++++ S Y+G LQ+ + A VK + + P D M + + E Sbjct: 718 ALSAFPSNIFYEGSLQNGVTAADR-------VKKGFDFQWPQP--DKPMFFYVTQGQ--E 766 Query: 2542 HLDPAGTGSFYNDGEADIVTQHVLNLVHCGVSPSEIAIQSPYIAQVQLLREKIEEYPGLS 2721 + +GT S+ N EA V + L+ G P +I I +PY Q R + +Y S Sbjct: 767 EIASSGT-SYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQ----RSYLVQYMQFS 821 Query: 2722 G---------VEVSTVDSFQGREADAVVLSMVRSNPLGAVGFMGDSRLMNVAITRARRHV 2874 G VE+++VD+FQGRE D ++LS VR+N +GF+ D R +NVA+TRAR V Sbjct: 822 GSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGV 881 Query: 2875 TVVCDTSTICHSTFLARLLRHIRRYGQVKHVAPGSLDGV--SGLGFSQP 3015 +V + + LL + Y + K + G L+ + S + FS+P Sbjct: 882 IIVGNPKALSKQPLWNHLLNY---YKEQKVLVEGPLNNLRESLMQFSKP 927
>Q9FJR0:RENT1_ARATH Regulator of nonsense transcripts 1 homolog - Arabidopsis thaliana| (Mouse-ear cress) Length = 1254 Score = 207 bits (527), Expect = 3e-52 Identities = 156/459 (33%), Positives = 231/459 (50%), Gaps = 13/459 (2%) Frame = +1 Query: 1612 SQLRALSLGLNKKRPVLVIQGPPGTGKTVLLTELIVRAVRQGEN-VLVTAPSNAAVDNMV 1788 SQ+ A+ L K P+ +IQGPPGTGKTV ++ +QG+ VLV APSN AVD + Sbjct: 492 SQVNAVKSVLQK--PISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLA 549 Query: 1789 EKLSSTGLNIVRVGNPAR--ISPSVTSKSLAEIVNGRLSQFRKELEXXXXXXXXXXXXCI 1962 EK+S+TGL +VR+ +R +S V +L V + + EL Sbjct: 550 EKISATGLKVVRLCAKSREAVSSPVEYLTLHYQVRHLDTSEKSELHKLQQLKD------- 602 Query: 1963 EDDSLAAGIRQLLKQLGRDLEMKEKETIMEVLSDAQVVLSTNTGAADPLIRKIGCFDLVI 2142 E L++ + K L R E E+ A V+ T GAAD + F V+ Sbjct: 603 EQGELSSSDEKKYKNLKRATER-------EITQSADVICCTCVGAADLRLSNFR-FRQVL 654 Query: 2143 IDEAGQGIEPSCWIPILQG-KRCILAGDHCQLAPAILSRKALEGGLGKSMMERASLLHDG 2319 IDE+ Q EP C IP++ G K+ +L GDHCQL P I+ +KA GL +S+ ER L G Sbjct: 655 IDESTQATEPECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVTL--G 712 Query: 2320 LLTTRLTVQHRMHDSIASWASKEMYQGLLQSSHSVASHLLADSPVVKDTWITRCPLLLLD 2499 + RL VQ+RMH +++ + S Y+G LQ+ ++ + + T P + + Sbjct: 713 IKPIRLQVQYRMHPALSEFPSNSFYEGTLQNGVTI---------IERQTTGIDFPWPVPN 763 Query: 2500 TRMPYGILNADCVEHLDPAGTGSFYNDGEADIVTQHVLNLVHCGVSPSEIAIQSPYIAQV 2679 M + + E + +GT S+ N EA V + V + GV PS+I + +PY Q Sbjct: 764 RPMFFYVQLGQ--EEISASGT-SYLNRTEAANVEKLVTAFLKSGVVPSQIGVITPYEGQ- 819 Query: 2680 QLLREKIEEYPGLSG---------VEVSTVDSFQGREADAVVLSMVRSNPLGAVGFMGDS 2832 R I Y +G +EV++VDSFQGRE D ++LS VRSN +GF+ D Sbjct: 820 ---RAYIVNYMARNGSLRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDP 876 Query: 2833 RLMNVAITRARRHVTVVCDTSTICHSTFLARLLRHIRRY 2949 R +NVA+TRAR + ++ + + LL H + + Sbjct: 877 RRLNVALTRARYGIVILGNPKVLSKQPLWNGLLTHYKEH 915
>Q9VYS3:RENT1_DROME Regulator of nonsense transcripts 1 homolog - Drosophila melanogaster| (Fruit fly) Length = 1180 Score = 197 bits (502), Expect = 2e-49 Identities = 159/497 (31%), Positives = 240/497 (48%), Gaps = 16/497 (3%) Frame = +1 Query: 1573 PDPRLSERYAFDD---SQLRALSLGLNKKRPVLVIQGPPGTGKTVLLTELIVRAVR-QGE 1740 P P+L D SQ+ A+ L +RP+ +IQGPPGTGKTV ++ + V+ G Sbjct: 439 PQPKLFSAPHLPDLNRSQVYAVKHAL--QRPLSLIQGPPGTGKTVTSATIVYQLVKLHGG 496 Query: 1741 NVLVTAPSNAAVDNMVEKLSSTGLNIVRVGNPARISPSVTSKSLA---EIVNGRLSQFRK 1911 VLV APSN AVD + EK+ T L +VRV +R + LA +I N + K Sbjct: 497 TVLVCAPSNTAVDQLTEKIHRTNLKVVRVCAKSREAIDSPVSFLALHNQIRNMETNSELK 556 Query: 1912 ELEXXXXXXXXXXXXCIEDDSLAAGIRQLLKQLGRDLEMKEKETIMEVLSDAQVVLSTNT 2091 +L+ E L++ + + L R E ++L A V+ T Sbjct: 557 KLQQLKD----------ETGELSSADEKRYRNLKRAAEN-------QLLEAADVICCTCV 599 Query: 2092 GAADPLIRKIGCFDLVIIDEAGQGIEPSCWIPILQG-KRCILAGDHCQLAPAILSRKALE 2268 GA D + ++ F ++IDE+ Q EP C +P++ G K+ IL GDHCQL P ++ +KA Sbjct: 600 GAGDGRLSRVK-FTSILIDESMQSTEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAR 658 Query: 2269 GGLGKSMMERASLLHDGLLTTRLTVQHRMHDSIASWASKEMYQGLLQSSHSVASHLLA-D 2445 GL +S+ ER +L G+ RL VQ+RMH ++ + S Y+G LQ+ L D Sbjct: 659 AGLSQSLFERLVVL--GIRPFRLEVQYRMHPELSQFPSNFFYEGSLQNGVCAEDRRLKLD 716 Query: 2446 SPVVKDTWITRCPLLLLDTRMPYGILNADCVEHLDPAGTGSFYNDGEADIVTQHVLNLVH 2625 P W P L E + +GT SF N EA V + + Sbjct: 717 FP-----WP--------QPERPMFFLVTQGQEEIAGSGT-SFLNRTEAANVEKITTRFLK 762 Query: 2626 CGVSPSEIAIQSPYIAQVQLLREKIEEYPGLSG-----VEVSTVDSFQGREADAVVLSMV 2790 G+ P +I I +PY Q L + ++ L +E+++VD+FQGRE D +++S V Sbjct: 763 AGIKPEQIGIITPYEGQRAYLVQYMQYQGSLHSRLYQEIEIASVDAFQGREKDIIIMSCV 822 Query: 2791 RSNPLGAVGFMGDSRLMNVAITRARRHVTVVCDTSTICHSTFLARLLRHIRRYGQVKHVA 2970 RSN +GF+ D R +NVA+TRA+ + +V + + LL Y K + Sbjct: 823 RSNERQGIGFLNDPRRLNVALTRAKFGIIIVGNPKVLAKQQLWNHLLNF---YKDRKVLV 879 Query: 2971 PGSLDGV--SGLGFSQP 3015 GSL+ + S + F +P Sbjct: 880 EGSLNNLKESLIHFQKP 896
>P30771:NAM7_YEAST ATP-dependent helicase NAM7 - Saccharomyces cerevisiae (Baker's| yeast) Length = 971 Score = 197 bits (501), Expect = 3e-49 Identities = 163/477 (34%), Positives = 244/477 (51%), Gaps = 15/477 (3%) Frame = +1 Query: 1606 DDSQLRALSLGLNKKRPVLVIQGPPGTGKTVLLTELIVRAVR-QGENVLVTAPSNAAVDN 1782 + SQ A+S L +RP+ +IQGPPGTGKTV ++ + + +LV APSN AVD+ Sbjct: 410 NSSQSNAVSHVL--QRPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDH 467 Query: 1783 MVEKLSSTGLNIVRVGNPAR--ISPSVTSKSLAEIVN-GRLSQFRKELEXXXXXXXXXXX 1953 + KL GL +VR+ +R + SV++ +L +V G + + L+ Sbjct: 468 LAAKLRDLGLKVVRLTAKSREDVESSVSNLALHNLVGRGAKGELKNLLKLKD-------- 519 Query: 1954 XCIEDDSLAAGIRQLLKQLGRDLEMKEKETIMEVLSDAQVVLSTNTGAADPLIRKIGCFD 2133 E L+A + +L R E E+L+ A VV T GA D R F Sbjct: 520 ---EVGELSASDTKRFVKLVRKTEA-------EILNKADVVCCTCVGAGDK--RLDTKFR 567 Query: 2134 LVIIDEAGQGIEPSCWIPILQG-KRCILAGDHCQLAPAILSRKALEGGLGKSMMERASLL 2310 V+IDE+ Q EP C IPI++G K+ IL GDH QL P IL RKA + GL +S+ ER L+ Sbjct: 568 TVLIDESTQASEPECLIPIVKGAKQVILVGDHQQLGPVILERKAADAGLKQSLFER--LI 625 Query: 2311 HDGLLTTRLTVQHRMHDSIASWASKEMYQGLLQSSHSVASHLLADSPVVKDTWITR-CPL 2487 G + RL VQ+RM+ ++ + S Y+G LQ+ ++ + +S K W R P+ Sbjct: 626 SLGHVPIRLEVQYRMNPYLSEFPSNMFYEGSLQNGVTIEQRTVPNS---KFPWPIRGIPM 682 Query: 2488 LLLDTRMPYGILNADCVEHLDPAGTGSFYNDGEADIVTQHVLNLVHCGVSPSEIAIQSPY 2667 + YG E + GT SF N EA + + L GV P +I + +PY Sbjct: 683 MFWAN---YGR------EEISANGT-SFLNRIEAMNCERIITKLFRDGVKPEQIGVITPY 732 Query: 2668 IAQVQLLREKIEEYPGLSG---------VEVSTVDSFQGREADAVVLSMVRSNPLGAVGF 2820 Q R I +Y ++G VEV++VD+FQGRE D ++LS VR+N A+GF Sbjct: 733 EGQ----RAYILQYMQMNGSLDKDLYIKVEVASVDAFQGREKDYIILSCVRANEQQAIGF 788 Query: 2821 MGDSRLMNVAITRARRHVTVVCDTSTICHSTFLARLLRHIRRYGQVKHVAPGSLDGV 2991 + D R +NV +TRA+ + ++ + ++ +T LL H R G + G+LD + Sbjct: 789 LRDPRRLNVGLTRAKYGLVILGNPRSLARNTLWNHLLIHFREKG---CLVEGTLDNL 842
>O76512:RENT1_CAEEL Regulator of nonsense transcripts 1 - Caenorhabditis elegans| Length = 1069 Score = 197 bits (500), Expect = 3e-49 Identities = 174/585 (29%), Positives = 282/585 (48%), Gaps = 21/585 (3%) Frame = +1 Query: 1324 LESRHGDPTFSRLFG---KSVRIDRIQGLAD----ALTYERNLEALMLLQRNGLLKSNAS 1482 + HGD + G KSV RI D A T+ER +AL LL + + Sbjct: 357 IPDNHGDEVGIEIRGAVDKSVMESRIMFTVDVVWNATTFERQYKALA-----ALLNDSKA 411 Query: 1483 ID--VVATLFGDGKDVMKMEQNCLIDWGESSLPDPRLSERYAFDDSQLRALSLGLNKKRP 1656 I + L G + M ++ + + LP+ + SQ++A+ L RP Sbjct: 412 ISPYLYQKLLGHPAEEMMLKFDLPRRLSVAGLPE--------LNSSQMQAVKQVLT--RP 461 Query: 1657 VLVIQGPPGTGKTVLLTELIVRAVRQGE-NVLVTAPSNAAVDNMVEKLSSTGLNIVRVGN 1833 + +IQGPPGTGKTV+ ++ V++ E NVLV +PSN AVD++ EK+ TGL +VR+ Sbjct: 462 LSLIQGPPGTGKTVVSATIVYHLVQKTEGNVLVCSPSNIAVDHLAEKIHKTGLKVVRLCA 521 Query: 1834 PAR-----ISPSVTSKSLAEIVNGRLSQFRKELEXXXXXXXXXXXXCIEDDSLAAGIRQL 1998 +R P +T + +++ G ++ +K ++ ++D+ AG + Sbjct: 522 RSREHSETTVPYLTLQHQLKVMGG--AELQKLIQ-------------LKDE---AGELEF 563 Query: 1999 LKQLGRDLEMKEKETIMEVLSDAQVVLSTNTGAADPLIRKIGCFDLVIIDEAGQGIEPSC 2178 L R +++K + E+L+ A V+ T + AAD + KI V+IDE+ Q EP Sbjct: 564 KDDL-RYMQLKRVKE-HELLAAADVICCTCSSAADARLSKIRT-RTVLIDESTQATEPEI 620 Query: 2179 WIPILQG-KRCILAGDHCQLAPAILSRKALEGGLGKSMMERASLLHDGLLTTRLTVQHRM 2355 + I++G ++ +L GDHCQL P ++ +KA GL +S+ ER LL G+ RL VQ+RM Sbjct: 621 LVSIMRGVRQLVLVGDHCQLGPVVICKKAAIAGLSQSLFERLVLL--GIRPFRLQVQYRM 678 Query: 2356 HDSIASWASKEMYQGLLQSSHSVASHLLADSPVVKDTWITRCPLLLLDTRMPYGILNADC 2535 H ++ + S Y G LQ + D +T P + Sbjct: 679 HPVLSEFPSNVFYDGSLQ-----------NGVTENDRHMTGVDWHWPKPNKPAFFWHCSG 727 Query: 2536 VEHLDPAGTGSFYNDGEADIVTQHVLNLVHCGVSPSEIAIQSPYIAQVQLLREKIEEYPG 2715 E L +GT SF N EA V + V L+ GV P +I + + Y Q + + Sbjct: 728 SEELSASGT-SFLNRTEAANVEKLVSKLIKAGVQPHQIGVITSYEGQRSFIVNYMHTQGT 786 Query: 2716 LS-----GVEVSTVDSFQGREADAVVLSMVRSNPLGAVGFMGDSRLMNVAITRARRHVTV 2880 L+ VE+++VD+FQGRE D ++++ VRSN + +GF+ D R +NVAITRA+ + + Sbjct: 787 LNSKLYENVEIASVDAFQGREKDYIIVTCVRSNDILGIGFLSDPRRLNVAITRAKYGLVL 846 Query: 2881 VCDTSTICHSTFLARLLRHIRRYGQVKHVAPGSLDGVSGLGFSQP 3015 V + + L+ H Y + + G ++ + L + P Sbjct: 847 VGNAKVLARHDLWHELINH---YKSKEMLYEGPINALKPLNLALP 888
>Q57568:Y104_METJA Uncharacterized ATP-dependent helicase MJ0104 - Methanococcus| jannaschii Length = 663 Score = 194 bits (492), Expect = 3e-48 Identities = 187/690 (27%), Positives = 332/690 (48%), Gaps = 38/690 (5%) Frame = +1 Query: 928 IEDFVRHMSDLLRIERDAELEFTQEELNATTMLDNNSKPSKPVEYLVTHGQAQQEQCDTI 1107 ++ +V+ DL+ IER E++F + E+ + G+ ++ I Sbjct: 14 VDLYVKKFMDLIEIERRCEMDFHKNEI-------------------IKLGKKRENVGRAI 54 Query: 1108 CNLSVISSSTGLGGLHLVLFRIEGEHKLPPTTLSPGDMVCVRTCNSRGEGATSCMQGFLY 1287 NL LG +V F G K T +SPGD+V V S+ S + + Sbjct: 55 LNLKGKFLGESLG-CTIVRF---GRKKPFKTEISPGDVVLV----SKENPLQSDLYANVI 106 Query: 1288 NLGEDGCSITVALESRHGDPTFSRLFGKSVRIDRIQGLADALTYERNLEALMLLQRNGLL 1467 +G++ + ++ P + ++ + VR+D + +T++R EAL R Sbjct: 107 YVGKNFIDVAFDVDV----PKW--VYKERVRVDLY---VNDITFKRMKEALREFARKR-- 155 Query: 1468 KSNASIDVVA-TLFGDGKDVMKMEQNCLIDWGESSLPDPRLSERYAFDDSQLRALSLGLN 1644 D +A + G + ++ +++ + +L + S++ A + L Sbjct: 156 ------DKLAYIILGIEHPEKPLREDIKLEFYDKNLNE---SQKLAVKKAVL-------- 198 Query: 1645 KKRPVLVIQGPPGTGKTVLLTELIVRAVRQGEN-VLVTAPSNAAVDNMVEKLSST--GLN 1815 R + +I GPPGTGKT +TE+IV+ V+ ++ VL TA SN A DN++E L L Sbjct: 199 -SRDLYLIHGPPGTGKTRTITEVIVQEVKFNKHKVLATADSNIAADNILEYLIKKYPDLK 257 Query: 1816 IVRVGNPARISPSVTSKSLAEIVNG------------RLSQFRKELEXXXXXXXXXXXXC 1959 +VRVG+P RIS + SL ++ ++ + +++ + Sbjct: 258 VVRVGHPTRISKDLIQHSLPYLIENHEKYQEILALREKIKEIKEQRDKFLKPSPRWRRGM 317 Query: 1960 IEDDSLAAGIRQL----------------------LKQLGRDLEMKEKETIMEVLSDAQV 2073 ++ L R+ +K++ +L+ ++ + E+L++A V Sbjct: 318 SDEQILKVAKRKKSYRGIPKEKIVSMAEWIIRNKKIKRIINNLDEITEKIMNEILAEADV 377 Query: 2074 VLSTNTGAADPLIRKIGCFDLVIIDEAGQGIEPSCWIPILQGKRCILAGDHCQLAPAILS 2253 +++TN+ A +++ FD+++IDE Q +EPSC IPI++G++ I+AGDH QL P +LS Sbjct: 378 IVATNSMAGSEILKGWE-FDVIVIDEGSQAMEPSCLIPIVKGRKLIMAGDHKQLPPTVLS 436 Query: 2254 RKALEGGLGKSMMERASLLHDGLLTTRLTVQHRMHDSIASWASKEMYQGLLQSSHSVASH 2433 L K++ ER + ++ L +Q+RM++ I + +K Y L++ SV + Sbjct: 437 ENE---ELKKTLFERLIKKYPE-FSSILEIQYRMNEKIMEFPNKMFYNNKLKADESVKNI 492 Query: 2434 LLADSPVVKDTWITRCPLLLLDTRMPYGILNADCVEHLDPAGTGSFYNDGEADIVTQHVL 2613 L D +VK+ I +++ +P +N + +E D + S+YN EA+ V + V Sbjct: 493 TLLD--LVKEEEIDEVDRDIIN-EIPVQFINVEGIERKDKE-SPSYYNIEEAEKVLEIVK 548 Query: 2614 NLVHCGVSPSEIAIQSPYIAQVQLLREKIEEYPGLSGVEVSTVDSFQGREADAVVLSMVR 2793 LV + + I +PY AQV+ LR EE+ +EV+TVD FQGRE +A+V+S VR Sbjct: 549 KLVKYKIPTNVI---TPYDAQVRYLRRLFEEHN--IDIEVNTVDGFQGRENEAIVISFVR 603 Query: 2794 SNPLGAVGFMGDSRLMNVAITRARRHVTVV 2883 + GF+ D R +NVAITRA+R + ++ Sbjct: 604 TKNF---GFLKDLRRLNVAITRAKRKLILI 630
>Q09820:RENT1_SCHPO Regulator of nonsense transcripts 1 homolog - Schizosaccharomyces| pombe (Fission yeast) Length = 925 Score = 194 bits (492), Expect = 3e-48 Identities = 165/506 (32%), Positives = 237/506 (46%), Gaps = 19/506 (3%) Frame = +1 Query: 1564 SSLPDPRLSERYAFDDSQLRALSLGLNKKRPVLVIQGPPGTGKTVLLTELIV-------R 1722 S L P L + A +RA+ +P+ +IQGPPGTGKTV ++ R Sbjct: 383 SDLSVPNLPKLNASQSEAVRAVL-----SKPLSLIQGPPGTGKTVTSASVVYHLATMQSR 437 Query: 1723 AVRQGENVLVTAPSNAAVDNMVEKLSSTGLNIVRVGNPAR--ISPSVTSKSLAEIVNGRL 1896 + VLV APSN AVD + EK+ TGL +VRV +R I SV+ SL E + Sbjct: 438 KRKSHSPVLVCAPSNVAVDQLAEKIHRTGLRVVRVAAKSREDIESSVSFLSLHEQIKNY- 496 Query: 1897 SQFRKELEXXXXXXXXXXXXCIEDDSLAAGIRQLLKQLGRDLEMKEKETIMEVLSDAQVV 2076 +F EL+ I+D+ K+L + EKE +L A V+ Sbjct: 497 -KFNPELQRLLKLRSENNELSIQDE----------KKLRILVAAAEKE----LLRAAHVI 541 Query: 2077 LSTNTGAADPLIRKIGCFDLVIIDEAGQGIEPSCWIPILQG-KRCILAGDHCQLAPAILS 2253 T GA D I K F V+IDEA Q EP C IP++ G K+ +L GDH QL P +++ Sbjct: 542 CCTCVGAGDRRISKYK-FRSVLIDEATQASEPECMIPLVLGAKQVVLVGDHQQLGPVVMN 600 Query: 2254 RKALEGGLGKSMMERASLLHDGLLTTRLTVQHRMHDSIASWASKEMYQGLLQS----SHS 2421 +K L +S+ ER +L G RL VQ+RMH ++ + S Y+G LQ+ S Sbjct: 601 KKVALASLSQSLFERLIIL--GNSPFRLVVQYRMHPCLSEFPSNTFYEGTLQNGVTTSER 658 Query: 2422 VASHLLADSPVVKDTWITRCPLLLLDTRMPYGILNADCVEHLDPAGTGSFYNDGEADIVT 2601 +A H+ D P WI L+ E L +GT SF N EA Sbjct: 659 IARHV--DFP-----WIQPDSPLMFYANFGQ--------EELSASGT-SFLNRTEASTCE 702 Query: 2602 QHVLNLVHCGVSPSEIAIQSPYIAQVQLLREKIEEYPGLS-----GVEVSTVDSFQGREA 2766 + V + V P +I I +PY Q + + ++ + VEV++VD+FQGRE Sbjct: 703 KIVTTFLRSNVLPEQIGIVTPYDGQRSYIVQYMQNNGSMQKDLYKAVEVASVDAFQGREK 762 Query: 2767 DAVVLSMVRSNPLGAVGFMGDSRLMNVAITRARRHVTVVCDTSTICHSTFLARLLRHIRR 2946 D ++LS VRS+ +GF+ D R +NVA+TRA+ V V+ + + + H + Sbjct: 763 DFIILSCVRSSEHQGIGFVNDPRRLNVALTRAKYGVIVLGNPKVLAKHALWYHFVLHCKE 822 Query: 2947 YGQVKHVAPGSLDGVSGLGFSQPTLP 3024 G + SL S L + P P Sbjct: 823 KGYLVEGTLNSLQKFS-LTLTPPQKP 847
>Q98TR3:RENT1_FUGRU Putative regulator of nonsense transcripts 1 - Fugu rubripes| (Japanese pufferfish) (Takifugu rubripes) Length = 1097 Score = 179 bits (455), Expect = 6e-44 Identities = 145/465 (31%), Positives = 229/465 (49%), Gaps = 9/465 (1%) Frame = +1 Query: 1648 KRPVLVIQGPPGTGKTVLLTELIVRAVRQGEN-VLVTAPSNAAVDNMVEKLSSTGLNIVR 1824 +RP+ +IQGPPGTGKTV ++ RQG VLV APSN AVD + EK+ TGL +VR Sbjct: 466 QRPLSLIQGPPGTGKTVTSATIVYHLSRQGNGPVLVCAPSNIAVDQLTEKIDKTGLKVVR 525 Query: 1825 VGNPAR--ISPSVTSKSLAEIVNGRLSQFRKELEXXXXXXXXXXXXCIEDDSLAAGIRQL 1998 + +R I V+ +L ++ S EL+ E L++ + Sbjct: 526 LCAKSREAIESPVSFLALHNQISNMDSM--PELQKLQQLKD-------ETGELSSADEKR 576 Query: 1999 LKQLGRDLEMKEKETIMEVLSDAQVVLSTNTGAADPLIRKIGCFDLVIIDEAGQGIEPSC 2178 + L R E E+L +A V+ T A DP + K+ F ++IDE+ Q EP C Sbjct: 577 YRALKRTAE-------RELLMNADVIWCTCVRAGDPRLAKMQ-FRSILIDESTQATEPKC 628 Query: 2179 WIPILQGKRCILAGDHCQLAPAILSRKALEGGLGKSMMERASLLHDGLLTTRLTVQHRMH 2358 P+ G + ++ G+ ++ +KA + GL +S+ ER +L G+ RL VQ+RMH Sbjct: 629 IGPVELGAKQLILGEITASWSCVMCKKAAKAGLSQSLFERLVVL--GIRPIRLQVQYRMH 686 Query: 2359 DSIASWASKEMYQGLLQSSHSVASHLLADSPVVKDTWITRCPLLLLDTRMPYGILNADCV 2538 +++++ S Y+G LQ+ + +K + + P P Sbjct: 687 PALSAFPSNIFYEGSLQNGVTAGDR-------IKKGFDFQWP----QPEKPMFFYVTQGQ 735 Query: 2539 EHLDPAGTGSFYNDGEADIVTQHVLNLVHCGVSPSEIAIQSPYIAQ----VQLLREKIEE 2706 E + +GT S+ N EA V + L+ G P +I I +PY Q VQ ++ Sbjct: 736 EEIASSGT-SYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSL 794 Query: 2707 YPGLSGVEVSTVDSFQGREADAVVLSMVRSNPLGAVGFMGDSRLMNVAITRARRHVTVVC 2886 + L VE+++VD+FQGRE D ++LS VR+N +GF+ D R +NVA+TRA+ V +V Sbjct: 795 HTKLYQVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRAKYGVIIVG 854 Query: 2887 DTSTICHSTFLARLLRHIRRYGQVKHVAPGSLDGV--SGLGFSQP 3015 + + LL + Y + K + G L+ + S + FS+P Sbjct: 855 NPKALSKQPLWNNLLNN---YKEQKVLVEGPLNNLRESLMQFSKP 896
>P51530:DNA2L_HUMAN DNA2-like helicase - Homo sapiens (Human)| Length = 1060 Score = 160 bits (404), Expect = 5e-38 Identities = 133/455 (29%), Positives = 220/455 (48%), Gaps = 13/455 (2%) Frame = +1 Query: 1615 QLRALSLGLNKKRPVLVIQGPPGTGKTVLLTELIVRAVRQGENVLVTAPSNAAVDNMVEK 1794 Q +A+ L K L++ G PGTGKT + L+ G +VL+T+ +++AVDN++ K Sbjct: 630 QRQAMKKVLLSKDYTLIV-GMPGTGKTTTICTLVRILYACGFSVLLTSYTHSAVDNILLK 688 Query: 1795 LSSTGLNIVRVGNPARISPSVTSKSLAEIVNGRLSQFRKELEXXXXXXXXXXXXCIEDDS 1974 L+ + +R+G ++ P++ QF ++ Sbjct: 689 LAKFKIGFLRLGQIQKVHPAI-------------QQFTEQ-------------------- 715 Query: 1975 LAAGIRQLLKQLGRDLEMKEKETIMEVLSDAQVVLSTNTGAADPLI-RKIGCFDLVIIDE 2151 ++ R +K + E+ + +V +T G P+ RKI FD I+DE Sbjct: 716 ----------EICRSKSIKSLALLEELYNSQLIVATTCMGINHPIFSRKI--FDFCIVDE 763 Query: 2152 AGQGIEPSCWIPILQGKRCILAGDHCQLAPAILSRKALEGGLGKSMMERASLLHDGLLTT 2331 A Q +P C P+ +R +L GDH QL P +L+R+A G+ +S+ +R L + Sbjct: 764 ASQISQPICLGPLFFSRRFVLVGDHQQLPPLVLNREARALGMSESLFKR--LEQNKSAVV 821 Query: 2332 RLTVQHRMHDSIASWASKEMYQGLLQSSHSVASHLLADSPVVKDTWI--------TRCPL 2487 +LTVQ+RM+ I S ++K Y+G L+ ++ + + KD + + P Sbjct: 822 QLTVQYRMNSKIMSLSNKLTYEGKLECGSDKVANAVINLRHFKDVKLELEFYADYSDNPW 881 Query: 2488 LL--LDTRMPYGILNADCVEHLDPAGTGSFYNDGEADIVTQHVLNLVHCGVSPSEIAIQS 2661 L+ + P LN D V + G N EA ++ V G SPS+I I + Sbjct: 882 LMGVFEPNNPVCFLNTDKVPAPEQVEKGGVSNVTEAKLIVFLTSIFVKAGCSPSDIGIIA 941 Query: 2662 PYIAQVQLLREKIEEYPGLSGVEVSTVDSFQGREADAVVLSMVRSNPLGAVG-FMGDSRL 2838 PY Q++++ + + G+ VEV+TVD +QGR+ V++S VRSN G VG + D R Sbjct: 942 PYRQQLKIINDLLARSIGM--VEVNTVDKYQGRDKSIVLVSFVRSNKDGTVGELLKDWRR 999 Query: 2839 MNVAITRARRHVTVV-CDTSTICHSTFLARLLRHI 2940 +NVAITRA+ + ++ C S C+ L +LL H+ Sbjct: 1000 LNVAITRAKHKLILLGCVPSLNCYPP-LEKLLNHL 1033
>Q8QHA5:DNA2L_XENLA DNA2-like helicase - Xenopus laevis (African clawed frog)| Length = 1053 Score = 154 bits (390), Expect = 2e-36 Identities = 128/473 (27%), Positives = 215/473 (45%), Gaps = 25/473 (5%) Frame = +1 Query: 1636 GLNK------KRPVL-----VIQGPPGTGKTVLLTELIVRAVRQGENVLVTAPSNAAVDN 1782 GLNK KR +L +I G PGTGKT + L+ G +VL+T+ +++AVDN Sbjct: 626 GLNKPQKQAMKRVLLSKDYTLIVGMPGTGKTTTICTLVRILYACGFSVLLTSYTHSAVDN 685 Query: 1783 MVEKLSSTGLNIVRVGNPARISPSVTSKSLAEIVNGRLSQFRKELEXXXXXXXXXXXXCI 1962 ++ KL + +R+G ++ P V S EI + Sbjct: 686 ILLKLKKFQVGFLRLGRTQKLHPDVQEFSEEEICKAK----------------------- 722 Query: 1963 EDDSLAAGIRQLLKQLGRDLEMKEKETIMEVLSDAQVVLSTNTGAADPLIRKIGCFDLVI 2142 +K + E+ + VV +T G P+ + FD I Sbjct: 723 --------------------SIKSLSALEELYNSQPVVATTCMGVNHPIFTRRR-FDFCI 761 Query: 2143 IDEAGQGIEPSCWIPILQGKRCILAGDHCQLAPAILSRKALEGGLGKSMMERASLLHDGL 2322 +DEA Q +P C P+ R +L GDH QL P + S +A E G+ +S+ +R + + Sbjct: 762 VDEASQISQPICLGPLFFADRFVLVGDHQQLPPLVKSAEARELGMSESLFKRLERNQEAV 821 Query: 2323 LTTRLTVQHRMHDSIASWASKEMYQGLLQSSHSVASHLLADSPVVK-------------D 2463 + +LTVQ+RM+ I + ++K +Y+G L+ + S+ + P +K Sbjct: 822 V--QLTVQYRMNSKIMALSNKLVYEGRLECASDRVSNAVVQLPHIKTLLLELEFRESQES 879 Query: 2464 TWITRCPLLLLDTRMPYGILNADCVEHLDPAGTGSFYNDGEADIVTQHVLNLVHCGVSPS 2643 WI +L+ P LN + + L+ G N EA +V + G PS Sbjct: 880 MWIKD----VLEPSNPVCFLNTEKIPALETEEKGGISNWIEAKLVFHLTKLYLKAGCRPS 935 Query: 2644 EIAIQSPYIAQVQLLREKIEEYPGLSGVEVSTVDSFQGREADAVVLSMVRSNPLGAVG-F 2820 +I I +PY Q++++ S VEV+TVD +QGR+ +++S VRSN G +G Sbjct: 936 DIGIIAPYRQQLKMISNYFNSL-SASAVEVNTVDKYQGRDKSVIIVSFVRSNIDGKLGDL 994 Query: 2821 MGDSRLMNVAITRARRHVTVVCDTSTICHSTFLARLLRHIRRYGQVKHVAPGS 2979 + D R +NVA+TRA+ + ++ T+ L +L+ +++ Q+ + G+ Sbjct: 995 LKDWRRLNVALTRAKHKLIMLGCVPTLNRFDCLEQLICNLKTENQIYDLPEGA 1047
>Q6ZQJ5:DNA2L_MOUSE DNA2-like helicase - Mus musculus (Mouse)| Length = 1062 Score = 152 bits (383), Expect = 1e-35 Identities = 126/457 (27%), Positives = 211/457 (46%), Gaps = 22/457 (4%) Frame = +1 Query: 1636 GLNK------KRPVL-----VIQGPPGTGKTVLLTELIVRAVRQGENVLVTAPSNAAVDN 1782 GLNK KR +L +I G PGTGKT + L+ G +VL+T+ +++AVDN Sbjct: 626 GLNKPQRQAMKRVLLSKDYTLIVGMPGTGKTTTICALVRILSACGFSVLLTSYTHSAVDN 685 Query: 1783 MVEKLSSTGLNIVRVGNPARISPSVTSKSLAEIVNGRLSQFRKELEXXXXXXXXXXXXCI 1962 ++ KL+ + +R+G ++ P + + EI R LE Sbjct: 686 ILLKLAKFKVGFLRLGQSHKVHPDIQKFTEEEICRSRSIASLAHLE-------------- 731 Query: 1963 EDDSLAAGIRQLLKQLGRDLEMKEKETIMEVLSDAQVVLSTNTGAADPLIRKIGCFDLVI 2142 E+ + +V +T G P+ + FD I Sbjct: 732 -----------------------------ELYNSHPIVATTCMGINHPIFSR-KTFDFCI 761 Query: 2143 IDEAGQGIEPSCWIPILQGKRCILAGDHCQLAPAILSRKALEGGLGKSMMERASLLHDGL 2322 +DEA Q +P C P+ +R +L GDH QL P +++R+A G+ +S+ +R L + Sbjct: 762 VDEASQISQPVCLGPLFFSRRFVLVGDHQQLPPLVVNREARALGMSESLFKR--LERNES 819 Query: 2323 LTTRLTVQHRMHDSIASWASKEMYQGLLQSSHSVASHLLADSPVVKDTWI--------TR 2478 +LTVQ+RM+ I S ++K Y G L+ ++ + P +KD + + Sbjct: 820 AVVQLTVQYRMNRKIMSLSNKLTYAGKLECGSDRVANAVLALPNLKDARLSLQLYADYSD 879 Query: 2479 CPLL--LLDTRMPYGILNADCVEHLDPAGTGSFYNDGEADIVTQHVLNLVHCGVSPSEIA 2652 P L +L+ P LN D V + G N EA ++ + G SPS+I Sbjct: 880 SPWLAGVLEPDNPVCFLNTDKVPAPEQVENGGVSNVTEARLIVFLTSTFIKAGCSPSDIG 939 Query: 2653 IQSPYIAQVQLLREKIEEYPGLSGVEVSTVDSFQGREADAVVLSMVRSNPLGAVG-FMGD 2829 + +PY Q++++ + + + VEV+TVD +QGR+ +++S VRSN G +G + D Sbjct: 940 VIAPYRQQLRIISDLLAR-SSVGMVEVNTVDKYQGRDKSLILVSFVRSNEDGTLGELLKD 998 Query: 2830 SRLMNVAITRARRHVTVVCDTSTICHSTFLARLLRHI 2940 R +NVA+TRA+ + ++ S++ L L H+ Sbjct: 999 WRRLNVALTRAKHKLILLGSVSSLKRFPPLGTLFDHL 1035
>Q00416:SEN1_YEAST Helicase SEN1 - Saccharomyces cerevisiae (Baker's yeast)| Length = 2231 Score = 143 bits (360), Expect = 6e-33 Identities = 152/551 (27%), Positives = 242/551 (43%), Gaps = 84/551 (15%) Frame = +1 Query: 1585 LSERYAFDDSQLRALSLGLNKKRPVLVIQGPPGTGKTVLLTELI---------------- 1716 + + Y + SQ A+ ++K+ L IQGPPGTGKT + +I Sbjct: 1329 VKKSYKLNTSQAEAIVNSVSKEGFSL-IQGPPGTGKTKTILGIIGYFLSTKNASSSNVIK 1387 Query: 1717 ---------VRAVRQGENVLVTAPSNAAVDNMVEKLSSTGLN---------IVRVGNPAR 1842 + + + +L+ APSNAAVD + +L S + +VRVG Sbjct: 1388 VPLEKNSSNTEQLLKKQKILICAPSNAAVDEICLRLKSGVYDKQGHQFKPQLVRVGRSDV 1447 Query: 1843 ISPSVTSKSLAEIVNGRLSQFRKEL----------------------EXXXXXXXXXXXX 1956 ++ ++ +L E+V+ R+ + E+ + Sbjct: 1448 VNVAIKDLTLEELVDKRIGERNYEIRTDPELERKFNNAVTKRRELRGKLDSESGNPESPM 1507 Query: 1957 CIEDDS-LAAGIRQLLK---QLGRDL-EMKEKETI-------------MEVLSDAQVVLS 2082 ED S L IR+L K +LGRD EM+EK ++ +L+ + ++ S Sbjct: 1508 STEDISKLQLKIRELSKIINELGRDRDEMREKNSVNYRNRDLDRRNAQAHILAVSDIICS 1567 Query: 2083 TNTGAADPLIRKIGC-FDLVIIDEAGQGIEPSCWIPILQG-KRCILAGDHCQLAPAILSR 2256 T +G+A ++ +G FD VIIDEA Q E S IP+ G KRCI+ GD QL P +LS Sbjct: 1568 TLSGSAHDVLATMGIKFDTVIIDEACQCTELSSIIPLRYGGKRCIMVGDPNQLPPTVLSG 1627 Query: 2257 KALEGGLGKSMMERASLLHDGLLTTRLTVQHRMHDSIASWASKEMYQGLLQSSHSVASHL 2436 A +S+ R L L VQ+RMH SI+ + S E YQG L+ Sbjct: 1628 AASNFKYNQSLFVRMEKNSSPYL---LDVQYRMHPSISKFPSSEFYQGRLK--------- 1675 Query: 2437 LADSPVVKDTWITRCPLLLLDTRMPYGILNADCVEHLDPAGTGSFYNDGEADIVTQHVLN 2616 D P + + + P L+ PY + A T S+ N E + + V Sbjct: 1676 --DGPGMDI--LNKRPWHQLEPLAPYKFFDIISGRQEQNAKTMSYTNMEEIRVAIELVDY 1731 Query: 2617 LVHCGVSP----SEIAIQSPYIAQVQLLREKIEEYPG---LSGVEVSTVDSFQGREADAV 2775 L + +I I SPY Q+Q +R++ Y G ++ +T+D FQG+E + + Sbjct: 1732 LFRKFDNKIDFTGKIGIISPYREQMQKMRKEFARYFGGMINKSIDFNTIDGFQGQEKEII 1791 Query: 2776 VLSMVRSNPL-GAVGFMGDSRLMNVAITRARRHVTVVCDTSTICHSTFLARLLRHIRRYG 2952 ++S VR++ +VGF+ D R MNVA+TRA+ + V+ ++ S L+ + Sbjct: 1792 LISCVRADDTKSSVGFLKDFRRMNVALTRAKTSIWVLGHQRSLAKSKLWRDLIEDAKDRS 1851 Query: 2953 QVKHVAPGSLD 2985 + + G LD Sbjct: 1852 CLAYACSGFLD 1862
>Q9URU2:DNA2_SCHPO DNA replication ATP-dependent helicase dna2 - Schizosaccharomyces| pombe (Fission yeast) Length = 1398 Score = 142 bits (359), Expect = 8e-33 Identities = 128/473 (27%), Positives = 219/473 (46%), Gaps = 12/473 (2%) Frame = +1 Query: 1564 SSLPDPRLSERYAFDDSQLRALSLGLNKKRPVLVIQGPPGTGKTVLLTELIVRAVRQGEN 1743 S+L DP + ++ Q+ AL + L++ G PGTGKT ++ LI + + + Sbjct: 922 SALIDPEFLK--CLNEDQITALKKCHAAEHYSLIL-GMPGTGKTTTISSLIRSLLAKKKK 978 Query: 1744 VLVTAPSNAAVDNMVEKLSSTGLNIVRVGNPARISPSVTSKSLAEIVNGRLSQFRKELEX 1923 +L+T+ ++ AVDN++ KL IVR+G+P +I P V L E Sbjct: 979 ILLTSFTHLAVDNILIKLKGCDSTIVRLGSPHKIHPLVKEFCLTEGTTF----------- 1027 Query: 1924 XXXXXXXXXXXCIEDDSLAAGIRQLLKQLGRDLEMKEKETIMEVLSDAQVVLSTNTGAAD 2103 D LA+ + D Q+V ++ G Sbjct: 1028 ---------------DDLAS--------------------LKHFYEDPQIVACSSLGVYH 1052 Query: 2104 PLIRKIGCFDLVIIDEAGQGIEPSCWIPILQGKRCILAGDHCQLAPAILSRKALEGGLGK 2283 + K FD IIDEA Q P C P+ ++ +L GDH QL P + + + + GL Sbjct: 1053 SIFNKRK-FDYCIIDEASQIPLPICLGPLQLAEKFVLVGDHYQLPPLVKNSRTSKDGLSL 1111 Query: 2284 SMMERASLLHDGLLTTRLTVQHRMHDSIASWASKEMYQG-LLQSSHSVA--------SHL 2436 S+ + S H +TT L +Q+RM++ I S +S+ +Y G L+ S +++ +HL Sbjct: 1112 SLFKLLSEKHPEAVTT-LRLQYRMNEDINSLSSELIYGGNLVCGSKTISQKKLILPKAHL 1170 Query: 2437 LADSPVVKDT--WITRCPLLLLDTRMPYGILNADCVEHLDPAGTGSFYNDGEADIVTQHV 2610 P + W+ + L++ N D + ++ N EA ++ Q V Sbjct: 1171 SDGLPDSSSSLHWVNK----LINPSHSVIFFNTDDILGVESKTNNILENHTEAFLIEQAV 1226 Query: 2611 LNLVHCGVSPSEIAIQSPYIAQVQLLREKIEEYPGLSGVEVSTVDSFQGREADAVVLSMV 2790 + + GV S I I S Y +QV+LL + ++ + + +E++TVD +QGR+ D +++S V Sbjct: 1227 SSFLERGVKQSSIGIISIYKSQVELLSKNLKSF---TEIEINTVDRYQGRDKDIILISFV 1283 Query: 2791 RSNPLGAVG-FMGDSRLMNVAITRARRHVTVVCDTSTICHSTFLARLLRHIRR 2946 RSN VG + D +NVA++RA+ + ST+ S ++ LL+ + + Sbjct: 1284 RSNSKNLVGELLRDWHRLNVALSRAKVKCIMFGSLSTLSSSNIVSHLLKLLEK 1336
>Q92355:SEN1_SCHPO Helicase sen1 - Schizosaccharomyces pombe (Fission yeast)| Length = 1687 Score = 141 bits (356), Expect = 2e-32 Identities = 142/512 (27%), Positives = 219/512 (42%), Gaps = 75/512 (14%) Frame = +1 Query: 1591 ERYAFDDSQLRALSLGLNKKRPVLVIQGPPGTGKT--------VLLTEL----IVRAVRQ 1734 +RY ++ Q +A+ L+ L IQGPPGTGKT LL +L I R +Q Sbjct: 1126 KRYQVNEPQAKAIMCALDNNGFTL-IQGPPGTGKTKTIIGIISALLVDLSRYHITRPNQQ 1184 Query: 1735 G------ENVLVTAPSNAAVDNMVEKLSSTGL---------NIVRVGNPARISPSV---- 1857 + +L+ APSNAAVD ++ +L L +VR+GNP I+ SV Sbjct: 1185 SKSTESKQQILLCAPSNAAVDEVLLRLKRGFLLENGEKYIPRVVRIGNPETINVSVRDLS 1244 Query: 1858 ----TSKSLAEIVNGRLSQFRKELEXXXXXXXXXXXXCIED----DSLAAGIRQLLKQLG 2013 T K L E+ G + + IE+ +A + + K LG Sbjct: 1245 LEYQTEKQLLEVNQGAIDLGSLQELTRWRDTFYDCIQKIEELEKQIDVARDVAEDTKSLG 1304 Query: 2014 RDLEMK----------------------------EKETIMEVLSDAQVVLSTNTGAADPL 2109 ++L+ K K+ +L A VV +T +G+ L Sbjct: 1305 KELQNKINEKNLAEQKVEELQSQSFTKNKEVDLLRKKAQKAILKQADVVCATLSGSGHDL 1364 Query: 2110 IRKIGC-FDLVIIDEAGQGIEPSCWIPILQG-KRCILAGDHCQLAPAILSRKALEGGLGK 2283 + F VIIDEA Q +E IP+ G K+CIL GD QL P +LS+KA + Sbjct: 1365 VAHSSLNFSTVIIDEAAQAVELDTIIPLRYGAKKCILVGDPNQLPPTVLSKKAASLNYSQ 1424 Query: 2284 SMMERASLLHDGLLTTRLTVQHRMHDSIASWASKEMYQGLLQSSHSVASHLLADSPVVKD 2463 S+ R + L++Q+RMH I+ + SK+ Y L+ ++A + Sbjct: 1425 SLFVRIQKNFSNQMCL-LSIQYRMHPDISHFPSKKFYDSRLEDGDNMAEK-------TQQ 1476 Query: 2464 TWITRCPLLLLDTRMPYGILNADCVEHLDPAGTGSFYNDGEADIVTQHV---LNLVHCGV 2634 W Y + + E + T S YN E + + V LN Sbjct: 1477 VWHVNPKF------TQYRLFDVRGKER--TSNTMSTYNLEEVEYLVNMVDELLNKFPDVN 1528 Query: 2635 SPSEIAIQSPYIAQVQLLREKIEEYPG---LSGVEVSTVDSFQGREADAVVLSMVRSNPL 2805 I + +PY +Q+ LR + G +S +++ TVD FQG+E D + S V+S Sbjct: 1529 FTGRIGVITPYRSQLHELRRAFKVKYGKSFMSTIDIQTVDGFQGQEKDIIFFSCVKSYSK 1588 Query: 2806 GAVGFMGDSRLMNVAITRARRHVTVVCDTSTI 2901 +GF+ D R +NVA+TRAR + ++ + T+ Sbjct: 1589 HGIGFLRDFRRLNVALTRARSSLLIIGNMETL 1620
>P38859:DNA2_YEAST DNA replication ATP-dependent helicase DNA2 - Saccharomyces| cerevisiae (Baker's yeast) Length = 1522 Score = 134 bits (337), Expect = 3e-30 Identities = 117/447 (26%), Positives = 200/447 (44%), Gaps = 23/447 (5%) Frame = +1 Query: 1630 SLGLNKKRPV---------LVIQGPPGTGKTVLLTELIVRAVRQGENVLVTAPSNAAVDN 1782 +L LN+K + +I G PGTGKT ++ E+I V +G+ VL+T+ +++AVDN Sbjct: 1051 TLNLNQKEAIDKVMRAEDYALILGMPGTGKTTVIAEIIKILVSEGKRVLLTSYTHSAVDN 1110 Query: 1783 MVEKLSSTGLNIVRVGNPARISPSVTSKSLAEIVNGRLSQFRKELEXXXXXXXXXXXXCI 1962 ++ KL +T ++I+R+G ++ P Sbjct: 1111 ILIKLRNTNISIMRLGMKHKVHPDTQ---------------------------------- 1136 Query: 1963 EDDSLAAGIRQLLKQLGRDLEMKEKETIMEVLSDAQVVLSTNTGAADPLIR-KIGCFDLV 2139 K + +K + ++ VV +T G D L FD V Sbjct: 1137 -------------KYVPNYASVKSYNDYLSKINSTSVVATTCLGINDILFTLNEKDFDYV 1183 Query: 2140 IIDEAGQGIEPSCWIPILQGKRCILAGDHCQLAPAILSRKALEGGLGKSMMERASLLHDG 2319 I+DEA Q P P+ G R I+ GDH QL P + + A GGL +S+ + H Sbjct: 1184 ILDEASQISMPVALGPLRYGNRFIMVGDHYQLPPLVKNDAARLGGLEESLFKTFCEKHPE 1243 Query: 2320 LLTTRLTVQHRMHDSIASWASKEMYQGLLQSSHSVASHLLADSPVVK------------D 2463 + LT+Q+RM I + ++ +Y L+ ++ + P+ + Sbjct: 1244 SV-AELTLQYRMCGDIVTLSNFLIYDNKLKCGNNEVFAQSLELPMPEALSRYRNESANSK 1302 Query: 2464 TWITRCPLLLLDTRMPYGILNADCVEHLDPAGTGSFYNDGEADIVTQHVLNLVHCGVSPS 2643 W+ +L TR + +C + ++ + + N GEA++ Q V ++ GV Sbjct: 1303 QWLED---ILEPTRKVVFLNYDNCPDIIEQSEKDNITNHGEAELTLQCVEGMLLSGVPCE 1359 Query: 2644 EIAIQSPYIAQVQLLREKIEEYPGLSGVEVSTVDSFQGREADAVVLSMVRSN-PLGAVGF 2820 +I + + Y AQ++LL+ KI G+E+ T D FQGR+ +++SMVR N L Sbjct: 1360 DIGVMTLYRAQLRLLK-KIFNKNVYDGLEILTADQFQGRDKKCIIISMVRRNSQLNGGAL 1418 Query: 2821 MGDSRLMNVAITRARRHVTVVCDTSTI 2901 + + R +NVA+TRA+ + ++ STI Sbjct: 1419 LKELRRVNVAMTRAKSKLIIIGSKSTI 1445
>Q5ZKG3:DNA2L_CHICK DNA2-like helicase - Gallus gallus (Chicken)| Length = 992 Score = 133 bits (335), Expect = 5e-30 Identities = 117/448 (26%), Positives = 204/448 (45%), Gaps = 1/448 (0%) Frame = +1 Query: 1651 RPVLVIQGPPGTGKTVLLTELIVRAVRQGENVLVTAPSNAAVDNMVEKLSSTGLNIVRVG 1830 R +I G PGTGKT + L+ G +VL+T+ ++ AVDN++ KL+ + +R+G Sbjct: 610 RDYTLIVGMPGTGKTTTICALVRILSACGFSVLLTSFTHTAVDNILLKLAKFKVGFLRLG 669 Query: 1831 NPARISPSVTSKSLAEIVNGRLSQFRKELEXXXXXXXXXXXXCIEDDSLAAGIRQLLKQL 2010 ++ P + RK E +++ Sbjct: 670 RAQKVHPDI----------------RKFTE---------------------------EEI 686 Query: 2011 GRDLEMKEKETIMEVLSDAQVVLSTNTGAADPLIRKIGCFDLVIIDEAGQGIEPSCWIPI 2190 R +K + E+ + VV + G P+ + FD I+DEA Q +P C P+ Sbjct: 687 CRSKSIKSVTDLEELYNSQPVVATACMGINHPIFVQKQ-FDFCIVDEASQISQPICLGPL 745 Query: 2191 LQGKRCILAGDHCQLAPAILSRKALEGGLGKSMMERASLLHDGLLTTRLTVQHRMHDSIA 2370 KR +L GDH QL P + + +A + G+ +S+ +R + ++ +LTVQ+RM+ I Sbjct: 746 FCSKRFVLVGDHQQLPPLVQNSEARDLGMSESLFKRLEQNQNAVV--QLTVQYRMNSKIM 803 Query: 2371 SWASKEMYQGLLQSSHSVASHLLADSPVVKDTWITRCPLLLLDTRMPYGILNADCVEHLD 2550 S ++K +Y+G L+ S+ A+ P +K L D + E L+ Sbjct: 804 SLSNKLVYEGKLECGSEKVSNATANLPNLK-----MLKLEFADASKTW------LKEVLE 852 Query: 2551 PAGTGSFYNDGEADIVTQHVLNLVHCGVSPSEIAIQSPYIAQVQLLREKIEEYPGLSGVE 2730 P F N +A G PS+I I SPY Q++++ + + + VE Sbjct: 853 PDKPVCFLNTEKA-------------GCRPSDIGIISPYRHQLKVITDLMARLKE-NRVE 898 Query: 2731 VSTVDSFQGREADAVVLSMVR-SNPLGAVGFMGDSRLMNVAITRARRHVTVVCDTSTICH 2907 V+T+D +QGR+ +++S VR SN + D R +NVAITRA+ + +V ++ Sbjct: 899 VNTIDKYQGRDKSIIIVSFVRNSNDENLGALLEDWRRLNVAITRAKHKLIMVGCVPSLRR 958 Query: 2908 STFLARLLRHIRRYGQVKHVAPGSLDGV 2991 L +LL H++ + ++ G+ + + Sbjct: 959 YPPLEKLLCHLQSEAMIFNLPAGAHESI 986
>Q7Z333:SETX_HUMAN Probable helicase senataxin - Homo sapiens (Human)| Length = 2677 Score = 126 bits (317), Expect = 6e-28 Identities = 143/534 (26%), Positives = 242/534 (45%), Gaps = 82/534 (15%) Frame = +1 Query: 1603 FDDSQLRAL--SLGLNKKRP----VLVIQGPPGTGKTVLLTELIVRAVRQGEN------- 1743 F++ Q +A+ + + K P + +I GPPGTGK+ + L+ R + + + Sbjct: 1934 FNEDQKKAIETAYAMVKHSPSVAKICLIHGPPGTGKSKTIVGLLYRLLTENQRKGHSDEN 1993 Query: 1744 ---------VLVTAPSNAAVDNMVEKL----------------SSTGLNIVRVGNPARIS 1848 VLV APSNAAVD +++K+ + +N+VR+G I+ Sbjct: 1994 SNAKIKQNRVLVCAPSNAAVDELMKKIILEFKEKCKDKKNPLGNCGDINLVRLGPEKSIN 2053 Query: 1849 PSVTSKSLAEIVNGRLSQ----------FRKE-LEXXXXXXXXXXXXC-----------I 1962 V SL VN R+ + RKE L+ C Sbjct: 2054 SEVLKFSLDSQVNHRMKKELPSHVQAMHKRKEFLDYQLDELSRQRALCRGGREIQRQELD 2113 Query: 1963 EDDSLAAGIRQLLKQLGRDLEMKEKETIMEVLSDAQVV---LSTNTG-AADPLIRKIG-- 2124 E+ S + RQ L ++++ + ++T ++ ++ ++ LST+ G + R G Sbjct: 2114 ENISKVSKERQELASKIKEVQGRPQKTQSIIILESHIICCTLSTSGGLLLESAFRGQGGV 2173 Query: 2125 CFDLVIIDEAGQGIEPSCWIPIL-QGKRCILAGDHCQLAPAILSRKALEGGLGKSMMER- 2298 F VI+DEAGQ E P++ + + IL GD QL P ++S KA E G +SMM R Sbjct: 2174 PFSCVIVDEAGQSCEIETLTPLIHRCNKLILVGDPKQLPPTVISMKAQEYGYDQSMMARF 2233 Query: 2299 ASLLHDG--------LLTTRLTVQHRMHDSIASWASKEMYQGLLQSSHSV-ASHLLADSP 2451 LL + L +LTVQ+RMH I + S +Y L+++ A +D P Sbjct: 2234 CRLLEENVEHNMISRLPILQLTVQYRMHPDICLFPSNYVYNRNLKTNRQTEAIRCSSDWP 2293 Query: 2452 VVKDTWITRCPLLLLDTRMPYGILNADCVEHLDPAGTGSFYNDGEADIVTQHVLNLV--- 2622 P L+ D D E D S+ N E +V + ++ L+ Sbjct: 2294 FQ--------PYLVFDV--------GDGSERRD---NDSYINVQEIKLVME-IIKLIKDK 2333 Query: 2623 HCGVSPSEIAIQSPYIAQVQLLREKIE-EYPGLSGVEVSTVDSFQGREADAVVLSMVRSN 2799 VS I I + Y AQ ++++ ++ E+ EV TVD+FQGR+ D V+++ VR+N Sbjct: 2334 RKDVSFRNIGIITHYKAQKTMIQKDLDKEFDRKGPAEVDTVDAFQGRQKDCVIVTCVRAN 2393 Query: 2800 PL-GAVGFMGDSRLMNVAITRARRHVTVVCDTSTICHSTFLARLLRHIRRYGQV 2958 + G++GF+ + +NV ITRA+ + ++ T+ + +L++ ++ G + Sbjct: 2394 SIQGSIGFLASLQRLNVTITRAKYSLFILGHLRTLMENQHWNQLIQDAQKRGAI 2447
>Q8GYD9:SDE3_ARATH Probable RNA helicase SDE3 - Arabidopsis thaliana (Mouse-ear cress)| Length = 1002 Score = 124 bits (310), Expect = 4e-27 Identities = 162/601 (26%), Positives = 257/601 (42%), Gaps = 24/601 (3%) Frame = +1 Query: 1201 TLSPGDMVCVRTCNSRGEGATSCMQGFLYNLGEDGCSITVALESRHGDPTFSRLFGKSVR 1380 +L GD + VR ++ +G QGF++ + D + A E H T ++ Sbjct: 294 SLVHGDFIFVR--HAYDDGTDHAYQGFVHRVEADEVHMKFASEF-HQRHTAGSVYNVRFT 350 Query: 1381 IDRIQGLADALTYERNLEALMLLQRNGLLKSNASIDVVATLFGDGKDVMKMEQNCLIDWG 1560 +RI + + ++A +L N L S S GK ++K + Sbjct: 351 YNRI----NTRRLYQAVDAAEMLDPNFLFPSLHS----------GKRMIKTK-------- 388 Query: 1561 ESSLPDPRLSERYAFDDSQLRALSLGLN-KKRPVLVIQGPPGTGKTVLLTELIVR--AVR 1731 P + A + Q+ ++ + L K P VI GPPGTGKT+ L E IV+ + Sbjct: 389 ------PFVPISPALNAEQICSIEMVLGCKGAPPYVIHGPPGTGKTMTLVEAIVQLYTTQ 442 Query: 1732 QGENVLVTAPSNAAVDNMVEKLSSTGLNIVRVGNPARISPSVTSKSLAEIVNGRLSQFRK 1911 + VLV APSN+A D+++EKL L VR+ + + ++S EI + Sbjct: 443 RNARVLVCAPSNSAADHILEKLLC--LEGVRIKDNEIFRLNAATRSYEEI--------KP 492 Query: 1912 ELEXXXXXXXXXXXXCIEDDSLAAGIRQLLKQLGRDLEMKEKETIMEVLSDAQVVLSTNT 2091 E+ C D E+ K ++ L+ ++V+ST Sbjct: 493 EI----------IRFCFFD------------------ELIFKCPPLKALTRYKLVVSTYM 524 Query: 2092 GA----ADPLIRKIGCFDLVIIDEAGQGIEPSCWIPI----LQGKRCILAGDHCQLAPAI 2247 A A+ + R G F +++DEAGQ EP I + L +LAGD QL P I Sbjct: 525 SASLLNAEGVNR--GHFTHILLDEAGQASEPENMIAVSNLCLTETVVVLAGDPRQLGPVI 582 Query: 2248 LSRKALEGGLGKSMMERASLLH-----DGLLTTRLTVQHRMHDSIASWASKEMYQGLLQS 2412 SR A GLGKS +ER D T+L +R H I SK Y G L + Sbjct: 583 YSRDAESLGLGKSYLERLFECDYYCEGDENYVTKLVKNYRCHPEILDLPSKLFYDGELVA 642 Query: 2413 SHSVASHLLADSPVVKDTWITRCPLLLLDTRMPYGILNADCVEHLDPAGTGSFYNDGEAD 2592 S +LA + + P++ YGI D E +P S++N E Sbjct: 643 SKEDTDSVLASLNFLPN---KEFPMVF------YGIQGCDEREGNNP----SWFNRIEIS 689 Query: 2593 IVTQHVLNL-VHCGVSPSEIAIQSPYIAQVQLLREKIEEYPGLSGVEVSTVDSFQGREAD 2769 V + + L + V +I + +PY QV ++E ++ ++ V+V +V+ FQG+E Sbjct: 690 KVIETIKRLTANDCVQEEDIGVITPYRQQVMKIKEVLDRL-DMTEVKVGSVEQFQGQEKQ 748 Query: 2770 AVVLSMVRS-------NPLGAVGFMGDSRLMNVAITRARRHVTVVCDTSTICHSTFLARL 2928 +++S VRS + +GF+ + R NVAITRA + ++ + IC +L Sbjct: 749 VIIISTVRSTIKHNEFDRAYCLGFLSNPRRFNVAITRAISLLVIIGNPHIICKDMNWNKL 808 Query: 2929 L 2931 L Sbjct: 809 L 809
>Q9BXT6:M10L1_HUMAN Putative helicase Mov10l1 - Homo sapiens (Human)| Length = 1211 Score = 115 bits (287), Expect = 2e-24 Identities = 119/458 (25%), Positives = 200/458 (43%), Gaps = 33/458 (7%) Frame = +1 Query: 1663 VIQGPPGTGKTVLLTELIVRA--VRQGENVLVTAPSNAAVDNMVEKLSSTGLNIVRVGNP 1836 ++ GPPGTGKTV + E +++ +LV APSN+A D + +L + +V P Sbjct: 767 ILFGPPGTGKTVTIIEAVLQVHFALPDSRILVCAPSNSAADLVCLRLHES-----KVLQP 821 Query: 1837 ARISPSVTSKSLAEIVNGRLSQFRKELEXXXXXXXXXXXXCIEDDSLAAGIRQLLKQLGR 2016 A + + EIV + + ++ G Sbjct: 822 ATMVRVNATCRFEEIVIDAVKPYCRD--------------------------------GE 849 Query: 2017 DLEMKEKETIMEVLSDAQVVLSTNTGAADPLIRKIGCFDLVIIDEAGQGIEPSCWIPI-- 2190 D+ + I+ + +++G + ++G F V +DEAGQ EP C IP+ Sbjct: 850 DIWKASRFRII-------ITTCSSSGLFYQIGVRVGHFTHVFVDEAGQASEPECLIPLGL 902 Query: 2191 ---LQGKRCILAGDHCQLAPAILSRKALEGGLGKSMMER---------------ASLLHD 2316 + G + +LAGD QL P I SR A+ GL S +ER A H+ Sbjct: 903 MSDISG-QIVLAGDPMQLGPVIKSRLAMAYGLNVSFLERLMSRPAYQRDENAFGACGAHN 961 Query: 2317 GLLTTRLTVQHRMHDSIASWASKEMYQGLLQ--SSHSVASHLLADSPVVKDTWITRCPLL 2490 LL T+L +R H+++ S+ Y L+ + +V + LL + K + PL+ Sbjct: 962 PLLVTKLVKNYRSHEALLMLPSRLFYHRELEVCADPTVVTSLLGWEKLPKKGF----PLI 1017 Query: 2491 LLDTRMPYGILNADCVEHLDPAGTGSFYNDGEADIVTQHVLNLVH---CGVSPSEIAIQS 2661 +G+ ++ E P S++N EA V ++ L H VS S+I + + Sbjct: 1018 F------HGVRGSEAREGKSP----SWFNPAEAVQVLRYCCLLAHSISSQVSASDIGVIT 1067 Query: 2662 PYIAQVQLLREKIEEYPGLSGVEVSTVDSFQGREADAVVLSMVRSN------PLGAVGFM 2823 PY QV+ +R + L ++V +V+ FQG+E +++S VRSN +GF+ Sbjct: 1068 PYRKQVEKIRILLRNV-DLMDIKVGSVEEFQGQEYLVIIISTVRSNEDRFEDDRYFLGFL 1126 Query: 2824 GDSRLMNVAITRARRHVTVVCDTSTICHSTFLARLLRH 2937 +S+ NVAITR + + V+ + + LL + Sbjct: 1127 SNSKRFNVAITRPKALLIVLGNPHVLVRDPCFGALLEY 1164
>P32644:ECM32_YEAST Putative ATP-dependent RNA helicase ECM32 - Saccharomyces cerevisiae| (Baker's yeast) Length = 1121 Score = 108 bits (270), Expect = 2e-22 Identities = 121/477 (25%), Positives = 210/477 (44%), Gaps = 53/477 (11%) Frame = +1 Query: 1612 SQLRALSLGLNKKRPVLVIQGPPGTGKTVLLTELIVRAVRQGEN--VLVTAPSNAAVDNM 1785 SQ A+ LN + ++QGPPGTGKT + E+I++ + + +L A SN A+DN+ Sbjct: 652 SQKTAVEHVLNNS--ITILQGPPGTGKTSTIEEIIIQVIERFHAFPILCVAASNIAIDNI 709 Query: 1786 VEKLSSTG--LNIVRVGNPARISPSVTSKSLAEIVNGRLSQFRKELEXXXXXXXXXXXXC 1959 EK+ + I+R+ + + L EI + K L Sbjct: 710 AEKIMENRPQIKILRILSKKKEQQYSDDHPLGEICLHNIVY--KNLSP------------ 755 Query: 1960 IEDDSLAAGIRQLLKQLGRDLEMK---EKETIM-EVLSDAQVVLSTNTGAADPLIRKIGC 2127 D + A + + + + + K EK + +V+S +Q++ +TN A ++ I Sbjct: 756 --DMQVVANKTRRGEMISKSEDTKFYKEKNRVTNKVVSQSQIIFTTNIAAGGRELKVIKE 813 Query: 2128 FDLVIIDEAGQGIEPSCWIPI-LQGKR-CILAGDHCQLAPAILSRKALEGGLGKSMMERA 2301 +VI+DEA Q E S +P+ L G R + GD QL+ + + LE L + ++ Sbjct: 814 CPVVIMDEATQSSEASTLVPLSLPGIRNFVFVGDEKQLS-SFSNIPQLETSLFERVLSNG 872 Query: 2302 SLLHDGLLTTRLTVQHRMHDSIASWASKEMYQGLLQSSHSVASHLLADSPVVKDTWITRC 2481 + + +L T Q+RMH I+ + K++Y G L+ V A V + +C Sbjct: 873 TYKNPLMLDT----QYRMHPKISEFPIKKIYNGELKDG--VTDEQKAWPGVQHPLFFYQC 926 Query: 2482 PL---------------------------------LLLDTRMPYGILNADCVEHLDPAGT 2562 L L+LD ++P +E + Sbjct: 927 DLGPESRVRSTQRDIVGFTYENKHECVEIVKIIQILMLDKKVP--------LEEIGVITP 978 Query: 2563 GSFYNDGEADIVTQHVLNLVHCGVSPSEIAIQSPYIAQVQLLREKIEEYPG--------- 2715 S D +DI+T++V+ ++P +I++Q Y +++L + Sbjct: 979 YSAQRDLLSDILTKNVV------INPKQISMQQEY-DEIELFNAAGSQGTAGSLQNNVIN 1031 Query: 2716 -LSGVEVSTVDSFQGREADAVVLSMVRSNPLGAVGFMGDSRLMNVAITRARRHVTVV 2883 ++G+ V+TVDSFQG E ++ S VR+N +GF+ D R +NVA+TRA+ + VV Sbjct: 1032 IINGLHVATVDSFQGHEKSFIIFSCVRNNTENKIGFLRDKRRLNVALTRAKHGLIVV 1088
>Q99MV5:M10L1_MOUSE Putative helicase Mov10l1 - Mus musculus (Mouse)| Length = 1187 Score = 105 bits (262), Expect = 1e-21 Identities = 116/458 (25%), Positives = 200/458 (43%), Gaps = 33/458 (7%) Frame = +1 Query: 1663 VIQGPPGTGKTVLLTELIVRA--VRQGENVLVTAPSNAAVDNMVEKLSSTGLNIVRVGNP 1836 ++ GPPGTGKTV + E +++ +LV APSN+A D + +L + +V P Sbjct: 769 ILFGPPGTGKTVTIIEAVLQVHYALPDSRILVCAPSNSAADLVCLRLHES-----KVPKP 823 Query: 1837 ARISPSVTSKSLAEIVNGRLSQFRKELEXXXXXXXXXXXXCIEDDSLAAGIRQLLKQLGR 2016 A + VN C ++++ I+ + G Sbjct: 824 AAMVR----------VNAT---------------------CRFEETIIDAIKPYCRD-GE 851 Query: 2017 DLEMKEKETIMEVLSDAQVVLSTNTGAADPLIRKIGCFDLVIIDEAGQGIEPSCWIPI-- 2190 D+ + I+ + ++ G + ++G F V +DEAGQ EP C IP+ Sbjct: 852 DIWRASRFRII-------ITTCSSAGLFYQIGVRVGYFTHVFVDEAGQASEPECLIPLGL 904 Query: 2191 ---LQGKRCILAGDHCQLAPAILSRKALEGGLGKSMMER---------------ASLLHD 2316 + G+ +LAGD QL P I SR A+ GL SM+ER A ++ Sbjct: 905 ISDINGQ-IVLAGDPMQLGPVIKSRLAMAYGLNVSMLERLMSRPAYLRDENAFGACGAYN 963 Query: 2317 GLLTTRLTVQHRMHDSIASWASKEMYQGLLQ--SSHSVASHLLADSPVVKDTWITRCPLL 2490 LL T+L +R H ++ + S+ Y L+ + V + LL + + + PL+ Sbjct: 964 PLLVTKLVKNYRSHSALLALPSRLFYHRELEVCADPKVVTSLLGWEKLPRKGF----PLI 1019 Query: 2491 LLDTRMPYGILNADCVEHLDPAGTGSFYNDGEADIVTQHVLNL---VHCGVSPSEIAIQS 2661 +G+ + E P S+++ EA V ++ L V VS +I + + Sbjct: 1020 F------HGVRGNEAREGRSP----SWFSPAEAVQVMRYCCLLARSVSSQVSSKDIGVIT 1069 Query: 2662 PYIAQVQLLREKIEEYPGLSGVEVSTVDSFQGREADAVVLSMVRSN------PLGAVGFM 2823 PY QV+ ++ + L+ ++V +V+ FQG+E +V+S VRSN +GF+ Sbjct: 1070 PYRKQVEKIKILLRNV-DLTDIKVGSVEEFQGQEYLVIVISTVRSNEDRFEDDRYFLGFL 1128 Query: 2824 GDSRLMNVAITRARRHVTVVCDTSTICHSTFLARLLRH 2937 +S+ NVAITR + + ++ + + LL + Sbjct: 1129 SNSKRFNVAITRPKALLIILGNPHVLVRDPCFGALLEY 1166
>P42694:HELZ_HUMAN Probable helicase with zinc finger domain - Homo sapiens (Human)| Length = 1942 Score = 98.2 bits (243), Expect = 2e-19 Identities = 123/478 (25%), Positives = 201/478 (42%), Gaps = 35/478 (7%) Frame = +1 Query: 1576 DPRLSERYAFDDSQLRALSLGLNKKRPVLVIQGPPGTGKTVLLTELIVRAVRQGEN-VLV 1752 DPRL+ + + A++ L + P ++I GP GTGKT L + + ++Q E +L+ Sbjct: 639 DPRLNAK---QKEAVLAITTPLAIQLPPVLIIGPYGTGKTFTLAQAVKHILQQQETRILI 695 Query: 1753 TAPSNAAVDNMVEKLSSTGLNIVRVGNP-ARISPSVTSKSLAEIVNGRLSQFRKELEXXX 1929 SN+A D ++ V GNP AR + V+ + Q+ Sbjct: 696 CTHSNSAADLYIKDYLHP---YVEAGNPQARPLRVYFRNRWVKTVHPVVHQY-------- 744 Query: 1930 XXXXXXXXXCIEDDSLAAGIRQLLKQLGRDLEMKEKETIMEVLSDAQVVLSTNTGA-ADP 2106 C L+ +M +KE ++L VV++ NT Sbjct: 745 ---------C------------LISSAHSTFQMPQKE---DILKHRVVVVTLNTSQYLCQ 780 Query: 2107 LIRKIGCFDLVIIDEAGQGIEPSCWIPIL---QGKRCILAGDHCQLAPAILSRKALEGGL 2277 L + G F +++DEA Q +E +P+ Q R +LAGDH QL+P + S A E L Sbjct: 781 LDLEPGFFTHILLDEAAQAMECETIMPLALATQNTRIVLAGDHMQLSPFVYSEFARERNL 840 Query: 2278 GKSMMERASLLHDGLLTTRLTV--QHRMHDSIASWASKEMYQGLLQSSHSVASHLLADSP 2451 S+++R + R+ + +R H++I ++ S+ Y+G L +S +H Sbjct: 841 HVSLLDRLYEHYPAEFPCRILLCENYRSHEAIINYTSELFYEGKLMASGKQPAH------ 894 Query: 2452 VVKDTWITRCPLLLLDTRMPYGILNADCVEHLDPAGTGSFYNDGEADIVTQHVLNL---- 2619 KD + PL R E + + +FYN+ E V + V L Sbjct: 895 --KDFY----PLTFFTAR----------GEDVQEKNSTAFYNNAEVFEVVERVEELRRKW 938 Query: 2620 -VHCG-VSPSEIAIQSPYIAQVQLLREKIEEYPGLSGVEVSTVDSFQGREADAVVLSMVR 2793 V G + I + +PY QV +R ++ + LS V V V + QG++ + LS VR Sbjct: 939 PVAWGKLDDGSIGVVTPYADQVFRIRAELRK-KRLSDVNVERVLNVQGKQFRVLFLSTVR 997 Query: 2794 S--------NPLGA-------------VGFMGDSRLMNVAITRARRHVTVVCDTSTIC 2904 + P+ GF+ + +L+N AITRA+ V VV D +C Sbjct: 998 TRHTCKHKQTPIKKKEQLLEDSTEDLDYGFLSNYKLLNTAITRAQSLVAVVGDPIALC 1055
>P23249:MOV10_MOUSE Putative helicase MOV-10 - Mus musculus (Mouse)| Length = 1004 Score = 96.3 bits (238), Expect = 8e-19 Identities = 145/592 (24%), Positives = 235/592 (39%), Gaps = 65/592 (10%) Frame = +1 Query: 1327 ESRHGDPTFSRLFGKSVRIDRIQ---------GLADALTYERNLEALMLLQRNGLLKSNA 1479 E++ DP + F V +DR++ D LT++ N R L + Sbjct: 405 ETQQDDPVTYKGFVHKVELDRVKLSFSTSLLSRFVDGLTFKVNFT----FNRQPLRVQHR 460 Query: 1480 SIDVVATLFGDGKDVMKMEQNCLIDWGESSLPDPRLSERY----AFDDSQLRALS---LG 1638 ++++ G+ V+ + G S LP + Y + QL+A+ G Sbjct: 461 ALELT------GRWVLWPMLFPVASRGVSLLPSDVKFKLYDRSLESNPEQLQAMKHIVRG 514 Query: 1639 LNKKRPVLVIQGPPGTGKTVLLTELIVRAVRQ--GENVLVTAPSNAAVDNMVEKLSSTGL 1812 + P ++ GPPGTGKTV L E I + V+ ++L APSN+ D + ++L Sbjct: 515 TTRPAPYIIF-GPPGTGKTVTLVEAIKQVVKHLPKAHILACAPSNSGADLLCQRL----- 568 Query: 1813 NIVRVGNPARI----SPSVTSKSLAEIVNGRLSQFRKELEXXXXXXXXXXXXCIEDDSLA 1980 RV P+ I +PS + + E + C D Sbjct: 569 ---RVHLPSSIYRLLAPSRDIRMVPEDIK---------------------TCCNWDAKKG 604 Query: 1981 AGIRQLLKQLGRDLEMKEKETIMEVLSDAQVVLSTNTGAADPLIRKIGCFDLVIIDEAGQ 2160 + K L + VL + S A P I F + IDEAG Sbjct: 605 EYVYPAKKHLQQ----------YRVLITTLITASRLVSAQFP----IDHFTHIFIDEAGH 650 Query: 2161 GIEPSCWIPIL----------QGKRCILAGDHCQLAPAILSRKALEGGLGKSMMERASLL 2310 +EP + I G + +LAGD QL P + S AL+ GLG S++ER Sbjct: 651 CMEPESLVAIAGLMDVKETGNPGGQLVLAGDPRQLGPVLRSPLALKHGLGYSLLERLLAY 710 Query: 2311 ----------HDGLLTTRLTVQHRMHDSIASWASKEMYQGLLQSSHSVASHLLADSPVVK 2460 +D T+L +R H +I ++ Y G LQ+ V + Sbjct: 711 NSLYKKGPNGYDPQFITKLLRNYRSHPTILDIPNQLYYDGELQACADVVDR----ERFCR 766 Query: 2461 DTWITR--CPLLLLDTRMPYGILNADCVEHLDPAGTGSFYNDGEADIVTQHVLNLV---- 2622 + + P++ +G++ D E P SF+N EA VT ++ L+ Sbjct: 767 WEGLPQQGFPIIF------HGVMGKDEREGNSP----SFFNPEEAATVTSYLKQLLAPSS 816 Query: 2623 ---HCGVSPSEIAIQSPYIAQVQLLREKI----EEYPGLSGVE---VSTVDSFQGREADA 2772 +SP + + SPY QV+ +R I E GL ++ V +V+ FQG+E Sbjct: 817 KKGKARLSPRNVGVISPYRKQVEKIRYCITKLDRELRGLDDIKDLKVGSVEEFQGQERSV 876 Query: 2773 VVLSMVRSNPLGA-------VGFMGDSRLMNVAITRARRHVTVVCDTSTICH 2907 +++S VRS+ +GF+ + + NVA+TRA+ + VV + + H Sbjct: 877 ILISTVRSSQSFVQLDLDFNLGFLKNPKRFNVAVTRAKALLIVVGNPLLLGH 928
>Q9HCE1:MOV10_HUMAN Putative helicase MOV-10 - Homo sapiens (Human)| Length = 1003 Score = 94.4 bits (233), Expect = 3e-18 Identities = 120/479 (25%), Positives = 194/479 (40%), Gaps = 49/479 (10%) Frame = +1 Query: 1618 LRALSLGLNKKRPVLVIQGPPGTGKTVLLTELIVRAVRQ--GENVLVTAPSNAAVDNMVE 1791 +R + G + P ++ GPPGTGKTV L E I + V+ ++L APSN+ D + + Sbjct: 507 MRHIVTGTTRPAPYIIF-GPPGTGKTVTLVEAIKQVVKHLPKAHILACAPSNSGADLLCQ 565 Query: 1792 KLSSTGLNIVRVGNPARI----SPSVTSKSLAEIVNGRLSQFRKELEXXXXXXXXXXXXC 1959 +L RV P+ I +PS + + E + + K+ E Sbjct: 566 RL--------RVHLPSSIYRLLAPSRDIRMVPEDIKPCCNWDAKKGEYV----------- 606 Query: 1960 IEDDSLAAGIRQLLKQLGRDLEMKEKETIMEVLSDAQVVLSTNTGAADPLIRKIGCFDLV 2139 K+K VL + A P I F + Sbjct: 607 --------------------FPAKKKLQEYRVLITTLITAGRLVSAQFP----IDHFTHI 642 Query: 2140 IIDEAGQGIEPSCWIPIL----------QGKRCILAGDHCQLAPAILSRKALEGGLGKSM 2289 IDEAG +EP + I G + +LAGD QL P + S + GLG S+ Sbjct: 643 FIDEAGHCMEPESLVAIAGLMEVKETGDPGGQLVLAGDPRQLGPVLRSPLTQKHGLGYSL 702 Query: 2290 MERASLL----------HDGLLTTRLTVQHRMHDSIASWASKEMYQGLLQSSHSVASHLL 2439 +ER +D T+L +R H +I ++ Y+G LQ+ V Sbjct: 703 LERLLTYNSLYKKGPDGYDPQFITKLLRNYRSHPTILDIPNQLYYEGELQACADVVDR-- 760 Query: 2440 ADSPVVKDTWITR--CPLLLLDTRMPYGILNADCVEHLDPAGTGSFYNDGEADIVTQHVL 2613 + + R P++ +G++ D E P SF+N EA VT ++ Sbjct: 761 --ERFCRWAGLPRQGFPIIF------HGVMGKDEREGNSP----SFFNPEEAATVTSYLK 808 Query: 2614 NLV-------HCGVSPSEIAIQSPYIAQVQLLREKI----EEYPGLSGV---EVSTVDSF 2751 L+ +SP + + SPY QV+ +R I E GL + +V +V+ F Sbjct: 809 LLLAPSSKKGKARLSPRSVGVISPYRKQVEKIRYCITKLDRELRGLDDIKDLKVGSVEEF 868 Query: 2752 QGREADAVVLSMVRSNPLGA-------VGFMGDSRLMNVAITRARRHVTVVCDTSTICH 2907 QG+E +++S VRS+ +GF+ + + NVA+TRA+ + +V + + H Sbjct: 869 QGQERSVILISTVRSSQSFVQLDLDFNLGFLKNPKRFNVAVTRAKALLIIVGNPLLLGH 927
>Q6J5K9:ARMI_DROME Probable RNA helicase armi - Drosophila melanogaster (Fruit fly)| Length = 1274 Score = 94.4 bits (233), Expect = 3e-18 Identities = 118/443 (26%), Positives = 194/443 (43%), Gaps = 42/443 (9%) Frame = +1 Query: 1663 VIQGPPGTGKTVLLTELIVRAVRQ--GENVLVTAPSNAAVDNMVEKLSSTGLNIVRVGNP 1836 V+ GPPG+GKT+ L E +++ VR G +LV PSN++ D + ++L Sbjct: 806 VLFGPPGSGKTMTLIETLLQLVRNLPGARILVGTPSNSSADLVTKRL------------- 852 Query: 1837 ARISPSVTSKSLAEIVNGRL---SQFRKELEXXXXXXXXXXXXCIEDDSLAAGI---RQL 1998 + SK+L + RL +Q K+L C D A G + + Sbjct: 853 ------IDSKALLQGDFIRLVSYNQVEKDL-----IPPEIMSYCATSDVGAVGSCEDKMM 901 Query: 1999 LKQLGRDLEMKEKETIMEVLSDAQVVLSTNTGAAD--PLIRKIGCFDLVIIDEAGQGIEP 2172 + + G L + K + ++ +ST T + L G F V+ DEAGQ EP Sbjct: 902 VTESGLKLRCQAK-----FIGTHRITISTCTTLGNFLQLGFPAGHFTHVLFDEAGQCTEP 956 Query: 2173 SCWIPIL----QGKRCILAGDHCQLAPAILSRKALEGGLGKSMMERA------------- 2301 +PI+ + + +L+GD QL + SR A + G S +ER Sbjct: 957 ETMVPIVMLTKKRSQVVLSGDPRQLQSIVTSRIASKMGFSISFLERLLERSPYRKDLQRF 1016 Query: 2302 --SLLHDGLLTTRLTVQHRMHDSIASWASKEMYQG----LLQSSHSVASHLLADSPVVKD 2463 S ++ L+ T+L +R SI S S+ Y +L S S LL+ V + Sbjct: 1017 PESSGYNPLVLTKLLYNYRALPSIMSIYSRLFYDDELIPVLSEKDSRESRLLSKLRCVFE 1076 Query: 2464 TWITRCPLLLLDTRMPYGILNADCVEHLDPAGTGSFYNDGEADIVTQHVLNLVHCGVSPS 2643 + + YGI+ + + P S++N E V + L V+ Sbjct: 1077 S---EKDIPQAHGTFFYGIIGENRQNNDSP----SWFNPQEVREVFLMTIALYRANVTAD 1129 Query: 2644 EIAIQSPYIAQVQLLREKIEEYPGLSGV--EVSTVDSFQGREADAVVLSMVRS------- 2796 +I I +PY QV++LR + G V ++ +V+ FQG+E D +++S VRS Sbjct: 1130 QIGIITPYQKQVKMLRSM---FIGTDVVMPKIGSVEEFQGQERDIILISTVRSSEEILRM 1186 Query: 2797 NPLGAVGFMGDSRLMNVAITRAR 2865 + ++GF+ S+ +NVA++RAR Sbjct: 1187 DARFSLGFVRCSKRLNVAVSRAR 1209
>Q9P2E3:ZNFX1_HUMAN NFX1-type zinc finger-containing protein 1 - Homo sapiens (Human)| Length = 1918 Score = 90.1 bits (222), Expect = 6e-17 Identities = 96/331 (29%), Positives = 150/331 (45%), Gaps = 8/331 (2%) Frame = +1 Query: 1990 RQLLKQLGRDLEMKEKETIMEVLSDAQVVLSTNTGAAD--PLIRKIGCFDLVIIDEAGQG 2163 RQ R E++ +E + +L DAQVV T TGAA +++K+ +VI++EA + Sbjct: 954 RQYRTSAERMAELRLQEDL-HILKDAQVVGMTTTGAAKYRQILQKVEP-RIVIVEEAAEV 1011 Query: 2164 IEPSCWIPILQG-KRCILAGDHCQLAP-AILSRKALEGGLGKSMMERASLLHDGLLTTRL 2337 +E + + + IL GDH QL P A + A L S+ ER L+ + RL Sbjct: 1012 LEAHTIATLSKACQHLILIGDHQQLRPSANVYDLAKNFNLEVSLFER--LVKVNIPFVRL 1069 Query: 2338 TVQHRMHDSIASWASKEMYQGLLQSSHSVASHLLADSPVVKDTWITRCPLLLLDTRMPYG 2517 QHRM IA + +YQ L +H P +L ++ Sbjct: 1070 NYQHRMCPEIARLLTPHIYQDL--ENH---------------------PSVLKYEKIKGV 1106 Query: 2518 ILNADCVEHLDPAGT----GSFYNDGEADIVTQHVLNLVHCGVSPSEIAIQSPYIAQVQL 2685 N VEH P S N EA V + + PS+I I + Y Q+ Sbjct: 1107 SSNLFFVEHNFPEQEIQEGKSHQNQHEAHFVVELCKYFLCQEYLPSQITILTTYTGQLFC 1166 Query: 2686 LREKIEEYPGLSGVEVSTVDSFQGREADAVVLSMVRSNPLGAVGFMGDSRLMNVAITRAR 2865 LR K+ +GV V VD +QG E D ++LS+VRSN G VGF+ S + VA++RA+ Sbjct: 1167 LR-KLMPAKTFAGVRVHVVDKYQGEENDIILLSLVRSNQEGKVGFLQISNRICVALSRAK 1225 Query: 2866 RHVTVVCDTSTICHSTFLARLLRHIRRYGQV 2958 + + + + + ++++ +R Q+ Sbjct: 1226 KGMYCIGNMQMLAKVPLWSKIIHTLRENNQI 1256 Score = 48.5 bits (114), Expect = 2e-04 Identities = 41/119 (34%), Positives = 60/119 (50%), Gaps = 10/119 (8%) Frame = +1 Query: 1591 ERYAFDDSQLRALSLGLNKKRPVLVIQGPPGTGKT---------VLLTELIVRAVRQGEN 1743 E DDSQ+ AL L R + +IQGPPGTGKT +L E + + Q Sbjct: 594 EALKLDDSQMEALQFALT--RELAIIQGPPGTGKTYVGLKIVQALLTNESVWQISLQKFP 651 Query: 1744 VLVTAPSNAAVDNMVEKL-SSTGLNIVRVGNPARISPSVTSKSLAEIVNGRLSQFRKEL 1917 +LV +N A+D +E + + +IVRVG + S + +L E+ N R +FR+ L Sbjct: 652 ILVVCYTNHALDQFLEGIYNCQKTSIVRVGGRSN-SEILKQFTLRELRNKR--EFRRNL 707
>Q9BYK8:PR285_HUMAN Peroxisomal proliferator-activated receptor A-interacting complex 285| kDa protein - Homo sapiens (Human) Length = 2649 Score = 89.0 bits (219), Expect = 1e-16 Identities = 122/486 (25%), Positives = 202/486 (41%), Gaps = 54/486 (11%) Frame = +1 Query: 1594 RYAFDDSQLRALSLGLNKKRPVLVIQGPPGTGKTVLLTELIV----------------RA 1725 R+ + SQ A+ L K P VIQGPPGTGKT++ ++ R Sbjct: 2150 RHKLNPSQNVAVREALEK--PFTVIQGPPGTGKTIVGLHIVFWFHKSNQEQVQPGGPPRG 2207 Query: 1726 VRQ--GENVLVTAPSNAAVDNMV----------------EKLSSTGLNIVRVGNPARISP 1851 ++ G +L PSN +VD + E+ ++ + RVG S Sbjct: 2208 EKRLGGPCILYCGPSNKSVDVLAGLLLRRMELKPLRVYSEQAEASEFPVPRVG-----SR 2262 Query: 1852 SVTSKSLAEIVNGRLSQFRKELEXXXXXXXXXXXXCIEDDSLAAGIRQLLKQLGRDLEMK 2031 + KS E GR +Q + + E + +++ DL Sbjct: 2263 KLLRKSPRE---GRPNQSLRSITLHHRIRQAPNPYSSEIKAFDTRLQRGELFSREDLVWY 2319 Query: 2032 EK---ETIMEVLSDAQVVLSTNTGAADPLIRKIGCFDLVIIDEAGQGIEPSCWIPIL--- 2193 +K E L +V+L T + AA + KI +++DEAG EP IP++ Sbjct: 2320 KKVLWEARKFELDRHEVILCTCSCAASASL-KILDVRQILVDEAGMATEPETLIPLVQFP 2378 Query: 2194 QGKRCILAGDHCQLAPAILSRKALEGGLGKSMMERASLLHDGLLTTRLTVQHRMHDSIAS 2373 Q ++ +L GDH QL P + + + GL +S+ ER H+ L Q+RMH+ I + Sbjct: 2379 QAEKVVLLGDHKQLRPVVKNERLQNLGLDRSLFER---YHED--AHMLDTQYRMHEGICA 2433 Query: 2374 WASKEMYQGLLQSSHSVASHLLADSPVVKDTWITRCPLLLLDTRMPYGILNADCVEHLDP 2553 + S Y+ L++ L V+ CP++ + + D Sbjct: 2434 FPSVAFYKSKLKTWQG----LRRPPSVLGHAGKESCPVIFGHVQGH----ERSLLVSTDE 2485 Query: 2554 AGTGSFYNDGE-ADIVTQHVLNLVHCGVSPSEIAIQSPYIAQVQLLREKIEEYPGLSGVE 2730 S N E A++V + V P +IA+ +PY AQ + + + G++GV Sbjct: 2486 GNENSKANLEEVAEVVRITKQLTLGRTVEPQDIAVLTPYNAQASEISKALRR-EGIAGVA 2544 Query: 2731 VSTVDSFQGREADAVVLSMVRS--------NPLGA-----VGFMGDSRLMNVAITRARRH 2871 VS++ QG E V++S VR+ P + +GF+ D +NVA+TRA+ Sbjct: 2545 VSSITKSQGSEWRYVLVSTVRTCAKSDLDQRPTKSWLKKFLGFVVDPNQVNVAVTRAQEG 2604 Query: 2872 VTVVCD 2889 + ++ D Sbjct: 2605 LCLIGD 2610 Score = 60.8 bits (146), Expect = 4e-08 Identities = 115/495 (23%), Positives = 193/495 (38%), Gaps = 27/495 (5%) Frame = +1 Query: 1501 LFGDGKDVMKMEQNCLIDWGESSLPDP-------RLSERYAFDDSQLRALSLGLNKKRPV 1659 L+ D + EQ + D +LP P R + + + + G ++ P Sbjct: 480 LWHQAVDTLPEEQLVVPDLPTCALPRPWSVPPLRRGNRKQELAVALIAGWGPGDGRRVPP 539 Query: 1660 LVIQGPPGTGKTVLLTELIVRAVRQGEN-VLVTAPSNAAVDNMVEKLSSTGLNIVRVGNP 1836 L+I GP GTGKT L + +R+ E VL+ +N+A D + + + V G+P Sbjct: 540 LLIYGPFGTGKTYTLAMASLEVIRRPETKVLICTHTNSAADIYIREYFHSH---VSGGHP 596 Query: 1837 ARISPSV--TSKSLAEIVNGRLSQFRKELEXXXXXXXXXXXXCIEDDSLAAGIRQLLKQL 2010 V T + L++ L C+ DD RQ + Sbjct: 597 EATPLRVMYTDRPLSQTDPVTLQY-----------------CCLTDD------RQAFRPP 633 Query: 2011 GRDLEMKEKETIMEVLSDAQVVLSTNTGAADPLIRKIGCFDLVIIDEAGQGIEPSCWIPI 2190 R + + V+ T T A L +G F ++IDEA Q +E P+ Sbjct: 634 TRAELARHR------------VVVTTTSQARELRVPVGFFSHILIDEAAQMLECEALTPL 681 Query: 2191 L---QGKRCILAGDHCQLAPAILSRKALEGGLGKSMMERASLLHDGLLTTRLTVQHRMHD 2361 G R +LAGDH Q+ P + S + ++ +LLH RL + ++ Sbjct: 682 AYASHGTRLVLAGDHMQVTPRLFS-------VARARAAEHTLLH------RLFLCYQQET 728 Query: 2362 SIASWASKEMYQGLLQSSHSVASHLLADSPVVKDTWITRCPLLLLDTRMPYGILNADCVE 2541 + S+ ++ + + ++ S + V K I + R Y ++ Sbjct: 729 HEVARQSRLVFHENYRCTDAIVSFISRHFYVAKGNPIHARGKVPPHPRH-YPLMFCHVAG 787 Query: 2542 HLD-PAGTGSFYNDGEADIVTQHVLNLVHC------GVSPSEIAIQSPYIAQVQLLREKI 2700 + D S+ N E V + V + G I + S + AQV LR+++ Sbjct: 788 NPDRDMSMASWLNLAEIAQVVEKVQEAYNTWPSCWGGREQRCICVVS-HGAQVSALRQEL 846 Query: 2701 EEYPGLSGVEVSTVDSFQGREADAVVLSMVRS-----NPLGAVG--FMGDSRLMNVAITR 2859 L V V + + GR+ VVLS V + +P GA+ F D+R++N +TR Sbjct: 847 RRRD-LGQVSVGSFEILPGRQFRVVVLSTVHTCQSLLSP-GALAPEFFTDARVLNTVLTR 904 Query: 2860 ARRHVTVVCDTSTIC 2904 A+ + VV D +C Sbjct: 905 AQSQLVVVGDAVALC 919
>Q8R151:ZNFX1_MOUSE NFX1-type zinc finger-containing protein 1 - Mus musculus (Mouse)| Length = 1909 Score = 87.4 bits (215), Expect = 4e-16 Identities = 93/331 (28%), Positives = 151/331 (45%), Gaps = 8/331 (2%) Frame = +1 Query: 1990 RQLLKQLGRDLEMKEKETIMEVLSDAQVVLSTNTGAAD--PLIRKIGCFDLVIIDEAGQG 2163 RQ R E++ +E + +L DA+VV T TGAA +++++ +VI++EA + Sbjct: 947 RQYRTWAERMAELRLQEDL-HILKDAEVVGMTTTGAAKYRQILQQVEP-RIVIVEEAAEV 1004 Query: 2164 IEPSCWIPILQG-KRCILAGDHCQLAP-AILSRKALEGGLGKSMMERASLLHDGLLTTRL 2337 +E + + + IL GDH QL P A + A L S+ ER L+ + RL Sbjct: 1005 LEAHTIATLSKACQHLILIGDHQQLRPSANVYDLAKNFNLEVSLFER--LVKVNIPFVRL 1062 Query: 2338 TVQHRMHDSIASWASKEMYQGLLQSSHSVASHLLADSPVVKDTWITRCPLLLLDTRMPYG 2517 QHRM IA + +YQ L +H P +L ++ Sbjct: 1063 NYQHRMRPEIARLLTPHIYQDL--ENH---------------------PSVLKYEQIKGV 1099 Query: 2518 ILNADCVEHLDPAGT----GSFYNDGEADIVTQHVLNLVHCGVSPSEIAIQSPYIAQVQL 2685 N VEH P S N EA + + L+ PS+I I + Y Q+ Sbjct: 1100 SSNLFFVEHNFPEQEIQEGKSHQNQHEAHFLVELCQYLLCQEYLPSQITILTTYTGQLFC 1159 Query: 2686 LREKIEEYPGLSGVEVSTVDSFQGREADAVVLSMVRSNPLGAVGFMGDSRLMNVAITRAR 2865 LR K+ +G++V VD +QG E D ++LS+VRSN G VGF+ + VA++RA+ Sbjct: 1160 LR-KLMPVKTFAGIKVHVVDKYQGEENDIILLSLVRSNQEGKVGFLQIPNRICVALSRAK 1218 Query: 2866 RHVTVVCDTSTICHSTFLARLLRHIRRYGQV 2958 + + + + + +R++ +R Q+ Sbjct: 1219 KGMYCIGNMQMLAKVPLWSRIIHTLRENNQI 1249 Score = 48.1 bits (113), Expect = 3e-04 Identities = 47/140 (33%), Positives = 67/140 (47%), Gaps = 20/140 (14%) Frame = +1 Query: 1558 GESSLPDPRLS----------ERYAFDDSQLRALSLGLNKKRPVLVIQGPPGTGKT---- 1695 G +L PR++ E DDSQ+ AL L K+ + +IQGPPGTGKT Sbjct: 566 GAEALRHPRINVFDFGQWPSKEALKLDDSQMEALQFALTKE--LAIIQGPPGTGKTYVGL 623 Query: 1696 ----VLLTELIVRAVR-QGENVLVTAPSNAAVDNMVEKL-SSTGLNIVRVGNPARISPSV 1857 LLT V + Q +LV +N A+D +E + +IVRVG + S + Sbjct: 624 KIVQALLTNKSVWQINTQTFPILVVCYTNHALDQFLEGIYGCQKTSIVRVGGRSN-SEIL 682 Query: 1858 TSKSLAEIVNGRLSQFRKEL 1917 +L E+ N R +FR+ L Sbjct: 683 KQFTLRELRNKR--EFRRTL 700
>O74465:HRR1_SCHPO Helicase required for RNAi-mediated heterochromatin assembly 1 -| Schizosaccharomyces pombe (Fission yeast) Length = 1015 Score = 77.4 bits (189), Expect = 4e-13 Identities = 83/296 (28%), Positives = 133/296 (44%), Gaps = 10/296 (3%) Frame = +1 Query: 2053 VLSDAQVVLSTNTGAAD--PLIRKIG---CFDLVIIDEAGQGIEPSCWIPILQG-KRCIL 2214 +L A V+ T TG ++ +I CF I+EA +E + ++ +L Sbjct: 679 LLRGANVIGMTTTGLNKYRDILERINPKICF----IEEAADVLEGPIIPAVFPSLEQLVL 734 Query: 2215 AGDHCQLAPAILSRKALEG--GLGKSMMERASLLHDGLLTTRLTVQHRMHDSIASWASKE 2388 GDH QL P + + L SM ER L+ + + TRLT+Q RMH I S Sbjct: 735 IGDHKQLRPGCSTYALRQDPFNLSISMFER--LVENDMEYTRLTMQRRMHPQIRRLVSS- 791 Query: 2389 MYQGLLQSSHSVASHLLADSPVVKDTWITRCPLLLLDTRMPYGILNADCVEHLDPAGTGS 2568 +Y+ L S + + + P + R L +R+ D G S Sbjct: 792 VYEDL--SDYEITKYW----PSIPGMGEIR-RFFLTHSRIE------------DNDGFAS 832 Query: 2569 FYNDGEADIVTQHVLNLVHCGVSPSEIAIQSPYIAQVQLLREKIEEYPGLSG--VEVSTV 2742 N EA ++ Q + L++ GV P +I + Y AQ L+ + E ++V+TV Sbjct: 833 KINLFEAQMLVQFAVYLINNGVEPQKITCLTFYAAQKDLIERLLSESLNREKHFIKVATV 892 Query: 2743 DSFQGREADAVVLSMVRSNPLGAVGFMGDSRLMNVAITRARRHVTVVCDTSTICHS 2910 D +QG E D V+LS+VR+N VGF+ + V+++RARR + + + + S Sbjct: 893 DGYQGEENDVVLLSLVRNNDRTEVGFLSSPHRVCVSLSRARRGLFIFGNAQLVAES 948 Score = 48.1 bits (113), Expect = 3e-04 Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 4/83 (4%) Frame = +1 Query: 1597 YAFDDSQLRALSLGLNKKRPVLVIQGPPGTGKTVLLTELIVRAVRQGEN----VLVTAPS 1764 Y D SQL+A L K+ + +IQGPPGTGK+ + + I + + +LV + Sbjct: 370 YILDSSQLKAYQSMLTKR--LSIIQGPPGTGKSFVTLKAIETLLENTHSHVLPILVACQT 427 Query: 1765 NAAVDNMVEKLSSTGLNIVRVGN 1833 N AVD ++ +L G +++R+G+ Sbjct: 428 NHAVDQILIRLLHQGASVMRLGS 450
>Q8CFQ3:AQR_MOUSE Intron-binding protein aquarius - Mus musculus (Mouse)| Length = 1481 Score = 70.9 bits (172), Expect = 4e-11 Identities = 82/333 (24%), Positives = 153/333 (45%), Gaps = 32/333 (9%) Frame = +1 Query: 1963 EDDSLAAGIRQLLKQLGRDLEMKEKETIME---------VLSDAQVVLSTNTGAA---DP 2106 ED +A G + +K++ LE ++ ++ +A+++ T T AA Sbjct: 993 EDMEIAEGCFRHIKKIFTQLEEFRASELLRSGLDRSKYLLVKEAKIIAMTCTHAALKRHD 1052 Query: 2107 LIRKIGCFDLVIIDEAGQGIEPSCWIPIL---------QGKRCILAGDHCQLAPAILSRK 2259 L++ +D ++++EA Q +E +IP+L + KR I+ GDH QL P I + Sbjct: 1053 LVKLGFKYDNILMEEAAQILEIETFIPLLLQNPQDGFSRLKRWIMIGDHHQLPPVIKNMA 1112 Query: 2260 ALE-GGLGKSMMERASLLHDGLLTTRLTVQHRMHDSIAS---WASKEMYQGLLQSSHSVA 2427 + + +S+ R + G+ T L Q R S+ + W K + G L + Sbjct: 1113 FQKYSNMEQSLFTR--FVRVGVPTVDLDAQGRARASLCNLYNWRYKNL--GNLPHVQLLP 1168 Query: 2428 SHLLADSPVVKDTWITRCPLLLLDTRMPYGILNADCVEHLDPAGTGSFY--NDGEADIVT 2601 A++ ++ D + ++N + + + + ++ N GEA+ V Sbjct: 1169 EFSTANAGLLYD----------------FQLINVEDFQGVGESEPNPYFYQNLGEAEYVV 1212 Query: 2602 QHVLNLVHCGVSPSEIAIQSPYIAQVQLLREKIEEYPGLSGV-----EVSTVDSFQGREA 2766 + + G +I+I + Y Q L+R+ I G + + +V+TVD FQG++ Sbjct: 1213 ALFMYMCLLGYPADKISILTTYNGQKHLIRDIINRRCGNNPLIGRPNKVTTVDRFQGQQN 1272 Query: 2767 DAVVLSMVRSNPLGAVGFMGDSRLMNVAITRAR 2865 D ++LS+VR+ AVG + D R + VA++RAR Sbjct: 1273 DYILLSLVRTR---AVGHLRDVRRLVVAMSRAR 1302 Score = 36.2 bits (82), Expect = 1.0 Identities = 22/82 (26%), Positives = 44/82 (53%), Gaps = 5/82 (6%) Frame = +1 Query: 1603 FDDSQLRALSLGLNKKRPVLVIQGPPGTGKTVLLTELIVRAVRQ--GENVLVTAPSNAAV 1776 F +Q+ A+ G+ ++V GPPGTGKT + ++I + L+ SN A+ Sbjct: 802 FTHTQIEAIRAGMQPGLTMVV--GPPGTGKTDVAVQIISNIYHNFPEQRTLIVTHSNQAL 859 Query: 1777 DNMVEKLSSTGL---NIVRVGN 1833 + + EK+ + + +++R+G+ Sbjct: 860 NQLFEKIMALDIDERHLLRLGH 881
>O60306:AQR_HUMAN Intron-binding protein aquarius - Homo sapiens (Human)| Length = 1485 Score = 70.9 bits (172), Expect = 4e-11 Identities = 82/333 (24%), Positives = 153/333 (45%), Gaps = 32/333 (9%) Frame = +1 Query: 1963 EDDSLAAGIRQLLKQLGRDLEMKEKETIME---------VLSDAQVVLSTNTGAA---DP 2106 ED +A G + +K++ LE ++ ++ +A+++ T T AA Sbjct: 989 EDMEIAEGCFRHIKKIFTQLEEFRASELLRSGLDRSKYLLVKEAKIIAMTCTHAALKRHD 1048 Query: 2107 LIRKIGCFDLVIIDEAGQGIEPSCWIPIL---------QGKRCILAGDHCQLAPAILSRK 2259 L++ +D ++++EA Q +E +IP+L + KR I+ GDH QL P I + Sbjct: 1049 LVKLGFKYDNILMEEAAQILEIETFIPLLLQNPQDGFSRLKRWIMIGDHHQLPPVIKNMA 1108 Query: 2260 ALE-GGLGKSMMERASLLHDGLLTTRLTVQHRMHDSIAS---WASKEMYQGLLQSSHSVA 2427 + + +S+ R + G+ T L Q R S+ + W K + G L + Sbjct: 1109 FQKYSNMEQSLFTR--FVRVGVPTVDLDAQGRARASLCNLYNWRYKNL--GNLPHVQLLP 1164 Query: 2428 SHLLADSPVVKDTWITRCPLLLLDTRMPYGILNADCVEHLDPAGTGSFY--NDGEADIVT 2601 A++ ++ D + ++N + + + + ++ N GEA+ V Sbjct: 1165 EFSTANAGLLYD----------------FQLINVEDFQGVGESEPNPYFYQNLGEAEYVV 1208 Query: 2602 QHVLNLVHCGVSPSEIAIQSPYIAQVQLLREKIEEYPGLSGV-----EVSTVDSFQGREA 2766 + + G +I+I + Y Q L+R+ I G + + +V+TVD FQG++ Sbjct: 1209 ALFMYMCLLGYPADKISILTTYNGQKHLIRDIINRRCGNNPLIGRPNKVTTVDRFQGQQN 1268 Query: 2767 DAVVLSMVRSNPLGAVGFMGDSRLMNVAITRAR 2865 D ++LS+VR+ AVG + D R + VA++RAR Sbjct: 1269 DYILLSLVRTR---AVGHLRDVRRLVVAMSRAR 1298 Score = 36.2 bits (82), Expect = 1.0 Identities = 22/82 (26%), Positives = 44/82 (53%), Gaps = 5/82 (6%) Frame = +1 Query: 1603 FDDSQLRALSLGLNKKRPVLVIQGPPGTGKTVLLTELIVRAVRQ--GENVLVTAPSNAAV 1776 F +Q+ A+ G+ ++V GPPGTGKT + ++I + L+ SN A+ Sbjct: 802 FTHTQIEAIRAGMQPGLTMVV--GPPGTGKTDVAVQIISNIYHNFPEQRTLIVTHSNQAL 859 Query: 1777 DNMVEKLSSTGL---NIVRVGN 1833 + + EK+ + + +++R+G+ Sbjct: 860 NQLFEKIMALDIDERHLLRLGH 881
>Q09449:YQ12_CAEEL Uncharacterized ATP-dependent helicase C05C10.2 - Caenorhabditis| elegans Length = 1551 Score = 55.1 bits (131), Expect = 2e-06 Identities = 66/255 (25%), Positives = 109/255 (42%), Gaps = 6/255 (2%) Frame = +1 Query: 2212 LAGDHCQLAPAI---LSRKALEGGLGKSMMERASLLHDGLLTTRLTVQHRMHDSIASWAS 2382 L GD QL P L K + G+G +M ERA + L +R H S Sbjct: 1233 LIGDIHQLPPYCEEGLEGKLKDFGIGNTM-ERA-IKEKMFPVCTLRNVYRCHPKTTELLS 1290 Query: 2383 KEMYQGLLQSSHSVASHLLADSPVVKDTWITRCPLLLLDTRMPYGILNADCVEHLDPAGT 2562 + Y G L S S + + ++T+ + + P +N GT Sbjct: 1291 ELFYDGALVSGVS---------ELARSDFMTKRDDFWPNPKFPMMFVNNTGAS--TKMGT 1339 Query: 2563 GSFYNDGEADIVTQHVLNLVHCG---VSPSEIAIQSPYIAQVQLLREKIEEYPGLSGVEV 2733 S N E IV + V NL++ V+PS+I + S Y AQ +L E + SGV+ Sbjct: 1340 -STSNSSEKSIVGEIVQNLINDPRNPVNPSDIGVISFYSAQTSILTEHLRG----SGVKC 1394 Query: 2734 STVDSFQGREADAVVLSMVRSNPLGAVGFMGDSRLMNVAITRARRHVTVVCDTSTICHST 2913 TVD+FQG E + +++ FM S +NVA++RA++ ++ + + Sbjct: 1395 GTVDAFQGSEKEIIIMCSTNER---ISDFMQLSNRLNVAMSRAKQVTIIIGHLDGLRRAN 1451 Query: 2914 FLARLLRHIRRYGQV 2958 + + ++ I + G + Sbjct: 1452 YWSTIVNKIEQNGNL 1466
>P47386:Y140_MYCGE Uncharacterized ATP-dependent helicase MG140 - Mycoplasma genitalium| Length = 1113 Score = 44.7 bits (104), Expect = 0.003 Identities = 68/296 (22%), Positives = 124/296 (41%), Gaps = 28/296 (9%) Frame = +1 Query: 2071 VVLSTNTGAADPLIRKIGCFDLVIIDEAGQGIEPSCWIPIL-QGKRCILAGDHCQLAPAI 2247 V + T AA + G +D V+IDEA Q IPIL + + I+AGD QL PA Sbjct: 677 VHIMTLESAATLTPNQRGLYDYVVIDEASQVFLERA-IPILFRADKYIIAGDTKQLKPAN 735 Query: 2248 LSR--------KALEGGLGKSMMERASLLHDGLLTTRLTVQHRMH---DS--IASWASKE 2388 + + E G ++ + +SLLH +R+ + H DS + ++ + Sbjct: 736 FFQSRAEYDVDEEFEDGNIEAAVHSSSLLHFLKNRSRILTLLKFHYRSDSADLIAFTNNR 795 Query: 2389 MYQG--LLQSSHSVASHLLADSPVVKDTWITRCPLLLLDTRMPYGILNADCVEHLDPAGT 2562 +Y + + + + V+ W L + R D V+ L+ T Sbjct: 796 IYDNELIFMNKANADQRVFIVHDVIDGIWKNNRNLQ--EAR--------DVVQRLEQLTT 845 Query: 2563 GSFY---------NDGEADIVTQHVLNLVHCGVSPSEIAIQSPYIAQVQLLREKIEEYPG 2715 + Y N +AD++ +++++ + +P + + + + + EY G Sbjct: 846 TNDYKKSLGVICFNKNQADLI-EYLIDKQN-----------NPLLNEWRERQNDVGEYEG 893 Query: 2716 LSGVEVSTVDSFQGREADAVVLSMVRS---NPLGAVGFMGDSRLMNVAITRARRHV 2874 L V +++ QG E D ++ S+ N G + G +NVAITRA++ + Sbjct: 894 LF---VKNIENVQGDERDIIIFSLGYDRSVNSYGPISKQGGENRLNVAITRAKQRI 946 Score = 38.1 bits (87), Expect = 0.27 Identities = 17/48 (35%), Positives = 28/48 (58%) Frame = +1 Query: 1660 LVIQGPPGTGKTVLLTELIVRAVRQGENVLVTAPSNAAVDNMVEKLSS 1803 L+I+GPPGTGK+ + ++V V + VL + A+D + +L S Sbjct: 309 LIIEGPPGTGKSETIVNILVNLVLNNKKVLFVSEKVTALDVVYNRLGS 356
>P09299:OBP_VZVD Replication origin-binding protein - Varicella-zoster virus (strain| Dumas) (HHV-3) (Human herpesvirus 3) Length = 835 Score = 43.9 bits (102), Expect = 0.005 Identities = 23/90 (25%), Positives = 48/90 (53%) Frame = +1 Query: 1546 LIDWGESSLPDPRLSERYAFDDSQLRALSLGLNKKRPVLVIQGPPGTGKTVLLTELIVRA 1725 L+ W + + P L + D ++ + G+++ RPV V++ P G+GKT L E + A Sbjct: 28 LVSWIKHTHPGISLELQL---DVPVKLIKPGMSQTRPVTVVRAPMGSGKTTALLEWLQHA 84 Query: 1726 VRQGENVLVTAPSNAAVDNMVEKLSSTGLN 1815 ++ +VLV + + ++++ + GL+ Sbjct: 85 LKADISVLVVSCRRSFTQTLIQRFNDAGLS 114
>P45792:TAPB_AERHY Type IV pilus assembly protein tapB - Aeromonas hydrophila| Length = 568 Score = 42.0 bits (97), Expect = 0.018 Identities = 44/172 (25%), Positives = 78/172 (45%), Gaps = 18/172 (10%) Frame = +1 Query: 1387 RIQGLADALTYERNLEALMLLQR-NGLLKSNASIDVVAT-LFGDGKDVMKMEQNCLIDWG 1560 RI+ D + +E + L R + LK A +D+ L DG+ +K+ +N +D Sbjct: 214 RIRFRIDGILHEIATPPVNLANRFSARLKVMARLDIAERRLPQDGRIKLKLSRNKSMDMR 273 Query: 1561 ESSLPD---------------PRLS-ERYAFDDSQLRALSLGLNKKRPVLVIQGPPGTGK 1692 ++LP RL+ E+ FDD Q L+K + ++++ GP G+GK Sbjct: 274 VNTLPTMWGEKIVIRLLDSSAARLNIEQLGFDDRQKAQYLRALSKPQGMILVTGPTGSGK 333 Query: 1693 TVLLTELIVRAVRQGENVLVTAPSNAAVDNMVEKLSSTGLNIVRVGNPARIS 1848 TV ++ G N+L T N + +++ G+N V+V A ++ Sbjct: 334 TV--------SLYTGLNILNTTEVNISTAEDPVEINLPGVNQVQVNPKAGLT 377
>Q8K9A8:EX5A_BUCAP Exodeoxyribonuclease V alpha chain - Buchnera aphidicola subsp.| Schizaphis graminum Length = 602 Score = 41.2 bits (95), Expect = 0.031 Identities = 20/80 (25%), Positives = 45/80 (56%), Gaps = 3/80 (3%) Frame = +1 Query: 1585 LSERYAFDDSQLRALSLGLNKKRPVLVIQGPPGTGKTVLLTELIVRAVRQGE---NVLVT 1755 L+ ++ L+ +++ L ++ I G PGTGKT ++ ++I+ ++ + + ++ Sbjct: 145 LNNLFSKKKHDLQKIAVILTLINNIIFITGGPGTGKTTIILKIIIALIKNAKKKIKIQLS 204 Query: 1756 APSNAAVDNMVEKLSSTGLN 1815 AP+ A +N++E L+ LN Sbjct: 205 APTGKATENLIEILNDKWLN 224
>P75033:Y153_MYCPN Uncharacterized ATP-dependent helicase MG140 homolog - Mycoplasma| pneumoniae Length = 1113 Score = 40.0 bits (92), Expect = 0.070 Identities = 61/302 (20%), Positives = 121/302 (40%), Gaps = 20/302 (6%) Frame = +1 Query: 2029 KEKETIMEVLSDAQVVLSTNTGAADPLIRKIGCFDLVIIDEAGQGIEPSCWIPIL-QGKR 2205 K+ ++ L ++ + P R++ +D V+IDEA Q + IPIL +G + Sbjct: 665 KKNFALLSKLFPVHIMTFESAALLTPNQRRL--YDYVVIDEASQ-VYLERAIPILYRGAK 721 Query: 2206 CILAGDHCQLAPAILSR--------KALEGGLGKSMMERASLLHDGLLTTRLTVQHRMH- 2358 I+AGD QL P+ + + E G ++ + SLLH +R+ + H Sbjct: 722 YIIAGDTKQLKPSNFFQARAEYDVDEEFEDGNVEAAVHSTSLLHFLKNRSRILTLLKFHY 781 Query: 2359 ----DSIASWASKEMYQG--LLQSSHSVASHLLADSPVVKDTWITRCPLLLLDTRMPYGI 2520 ++ ++ + +Y + + + + V+ W R L + R Sbjct: 782 RSDSANLIAFTNNRIYNNELIFMNKATADKQVFIVHDVIDGIW--RNNRNLQEAR----- 834 Query: 2521 LNADCVEHLDPAGTGSFYNDGEADIV-TQHVLNLVHCGVSPSEIAIQSPYIAQVQLLREK 2697 D V+ L+ + Y I ++ L+ + + + + R++ Sbjct: 835 ---DVVQRLEQLTQTAEYQKSLGVICFNKNQAELIEYMIDKQNNPLLNEW-------RDR 884 Query: 2698 IEEYPGLSGVEVSTVDSFQGREADAVVLSMVRS---NPLGAVGFMGDSRLMNVAITRARR 2868 + G+ V +++ QG E D ++ S+ N G + G +NVAITRA++ Sbjct: 885 VNAQGEYVGLFVKNIENVQGDERDIIIFSLGYDRSVNSYGPISKQGGENRLNVAITRAKQ 944 Query: 2869 HV 2874 + Sbjct: 945 RI 946 Score = 34.7 bits (78), Expect = 2.9 Identities = 15/48 (31%), Positives = 27/48 (56%) Frame = +1 Query: 1660 LVIQGPPGTGKTVLLTELIVRAVRQGENVLVTAPSNAAVDNMVEKLSS 1803 ++I+GPPGTGK+ + ++V + VL + A+D + +L S Sbjct: 309 VIIEGPPGTGKSETIVNILVNLALNKKKVLFVSEKVTALDVVYNRLGS 356
>Q9PN90:RADA_CAMJE DNA repair protein radA homolog - Campylobacter jejuni| Length = 446 Score = 36.6 bits (83), Expect = 0.77 Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 2/77 (2%) Frame = +1 Query: 1594 RYAFDDSQLRALSLGLNKKRPVLVIQGPPGTGKTVLLTELIVRAVRQGENVLVTA--PSN 1767 RY+ DD++L + G + +++I G PG GK+ LL ++ +QG+ VL + S Sbjct: 70 RYSTDDNELDLVLGGGLVEGSLVLIGGSPGVGKSTLLLKIASNLAKQGKKVLYVSGEESK 129 Query: 1768 AAVDNMVEKLSSTGLNI 1818 A + ++L + N+ Sbjct: 130 AQIKLRADRLEANTPNL 146
>Q05002:R1AB_CVH22 Replicase polyprotein 1ab - Human coronavirus 229E (HCoV-229E)| Length = 6758 Score = 36.6 bits (83), Expect = 0.77 Identities = 30/113 (26%), Positives = 49/113 (43%) Frame = +1 Query: 2563 GSFYNDGEADIVTQHVLNLVHCGVSPSEIAIQSPYIAQVQLLREKIEEYPGLSGVEVSTV 2742 GS N + D+V + +H + S+ SPY +Q + L G++ TV Sbjct: 5481 GSSINRRQLDVVKR----FIHKNSTWSKAVFISPYNSQNYVAAR-------LLGLQTQTV 5529 Query: 2743 DSFQGREADAVVLSMVRSNPLGAVGFMGDSRLMNVAITRARRHVTVVCDTSTI 2901 DS QG E D V+ + ++ NVAITRA++ + + T+ Sbjct: 5530 DSAQGSEYDYVIFAQTSDTAHAC-----NANRFNVAITRAKKGIFCIMSDRTL 5577 Score = 33.5 bits (75), Expect = 6.5 Identities = 18/49 (36%), Positives = 29/49 (59%) Frame = +1 Query: 1648 KRPVLVIQGPPGTGKTVLLTELIVRAVRQGENVLVTAPSNAAVDNMVEK 1794 K+ + IQGPPG+GK+ + + G ++ TA S+AAVD++ K Sbjct: 5270 KQRITTIQGPPGSGKS--HCSIGIGVYYPGARIVFTACSHAAVDSLCAK 5316
>P83758:DMT3A_DANRE Doublesex- and mab-3-related transcription factor 3a - Danio rerio| (Zebrafish) (Brachydanio rerio) Length = 448 Score = 29.3 bits (64), Expect(2) = 0.95 Identities = 14/25 (56%), Positives = 17/25 (68%) Frame = -2 Query: 2555 AGSKCSTQSAFRIPYGIRVSSRSSG 2481 + SK S SAFR+P +R SS SSG Sbjct: 298 SSSKWSVGSAFRVPDSLRFSSESSG 322 Score = 25.8 bits (55), Expect(2) = 0.95 Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 3/41 (7%) Frame = -3 Query: 2782 IGPPHLPPSLESYLLLKP---QPQKALDILLSSLSTIEPEQ 2669 I P H P LE L+LK A++ILLSS ST++PE+ Sbjct: 232 IFPAHKPAVLE--LILKGCGGDLVGAIEILLSSRSTMKPEK 270
>Q8PX44:CDC62_METMA Cell division control protein 6 homolog 2 - Methanosarcina mazei| (Methanosarcina frisia) Length = 373 Score = 36.2 bits (82), Expect = 1.0 Identities = 30/95 (31%), Positives = 42/95 (44%), Gaps = 5/95 (5%) Frame = +1 Query: 1513 GKDVMKMEQNCLIDWGESSLPDPRLSERYAFDDSQLRALSLGLNKK----RPV-LVIQGP 1677 G D++ ++ D S L L E + DSQL AL L RP+ ++ GP Sbjct: 3 GNDILLWDETLFKDL--SVLEPDYLPEYFPHRDSQLNALRFALKPALRGMRPLNCLLVGP 60 Query: 1678 PGTGKTVLLTELIVRAVRQGENVLVTAPSNAAVDN 1782 PGTGKT + + NV VT N +D+ Sbjct: 61 PGTGKTSAIMKTFREVEAHAPNV-VTVKVNCQIDS 94
>P34211:YUAR_ECOLI Uncharacterized protein yuaR precursor - Escherichia coli| Length = 499 Score = 35.8 bits (81), Expect = 1.3 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 4/61 (6%) Frame = -1 Query: 882 TVNRFSSWCRPAHSCPVMS----RIGHFLQQLPCLRGAPVVDEPLVLVTQQDTTELTLEM 715 T +RF++WC SCP+ S I F Q L L +P+ D ++ D LT E+ Sbjct: 255 TFDRFAAWCARTKSCPLSSDRNQAIHQFHQLLLKLHNSPLTDSRGESISSDDLISLTTEL 314 Query: 714 V 712 + Sbjct: 315 L 315
>Q91AV2:R1AB_PEDV7 Replicase polyprotein 1ab - Porcine epidemic diarrhea virus (strain| CV777) (PEDV) Length = 6781 Score = 35.4 bits (80), Expect = 1.7 Identities = 21/56 (37%), Positives = 32/56 (57%) Frame = +1 Query: 1648 KRPVLVIQGPPGTGKTVLLTELIVRAVRQGENVLVTAPSNAAVDNMVEKLSSTGLN 1815 K+ + IQGPPG+GK+ + L G ++ TA S+AAVD++ K S+ N Sbjct: 5302 KQKITTIQGPPGSGKSHCVIGL--GLYYPGARIVFTACSHAAVDSLCVKASTAYSN 5355
>Q9PYA3:R1AB_CVM2 Replicase polyprotein 1ab - Murine coronavirus (strain 2) (MHV-2)| (Murine hepatitis virus) Length = 7124 Score = 35.4 bits (80), Expect = 1.7 Identities = 24/63 (38%), Positives = 33/63 (52%) Frame = +1 Query: 1666 IQGPPGTGKTVLLTELIVRAVRQGENVLVTAPSNAAVDNMVEKLSSTGLNIVRVGNPARI 1845 +QGPPGTGK+ L L V V+ TA S+AAVD + EK + + + RI Sbjct: 5609 VQGPPGTGKSHLAIGLAVYYCT--ARVVYTAASHAAVDALCEK----AYKFLNINDCTRI 5662 Query: 1846 SPS 1854 P+ Sbjct: 5663 VPA 5665
>Q8V6W7:R1AB_CVBQ Replicase polyprotein 1ab - Bovine coronavirus (strain Quebec) (BCoV)| (BCV) Length = 7059 Score = 35.4 bits (80), Expect = 1.7 Identities = 24/63 (38%), Positives = 33/63 (52%) Frame = +1 Query: 1666 IQGPPGTGKTVLLTELIVRAVRQGENVLVTAPSNAAVDNMVEKLSSTGLNIVRVGNPARI 1845 +QGPPGTGK+ L L V V+ TA S+AAVD + EK + + + RI Sbjct: 5576 VQGPPGTGKSHLAIGLAVYYCT--ARVVYTAASHAAVDALCEK----AYKFLNINDCTRI 5629 Query: 1846 SPS 1854 P+ Sbjct: 5630 VPA 5632
>Q66198:R1AB_CVBM Replicase polyprotein 1ab - Bovine coronavirus (strain Mebus) (BCoV)| (BCV) Length = 7094 Score = 35.4 bits (80), Expect = 1.7 Identities = 24/63 (38%), Positives = 33/63 (52%) Frame = +1 Query: 1666 IQGPPGTGKTVLLTELIVRAVRQGENVLVTAPSNAAVDNMVEKLSSTGLNIVRVGNPARI 1845 +QGPPGTGK+ L L V V+ TA S+AAVD + EK + + + RI Sbjct: 5576 VQGPPGTGKSHLAIGLAVYYCT--ARVVYTAASHAAVDALCEK----AYKFLNINDCTRI 5629 Query: 1846 SPS 1854 P+ Sbjct: 5630 VPA 5632
>Q8V439:R1AB_CVBLU Replicase polyprotein 1ab - Bovine coronavirus (strain| 98TXSF-110-LUN) (BCoV-LUN) (BCV) Length = 7094 Score = 35.4 bits (80), Expect = 1.7 Identities = 24/63 (38%), Positives = 33/63 (52%) Frame = +1 Query: 1666 IQGPPGTGKTVLLTELIVRAVRQGENVLVTAPSNAAVDNMVEKLSSTGLNIVRVGNPARI 1845 +QGPPGTGK+ L L V V+ TA S+AAVD + EK + + + RI Sbjct: 5576 VQGPPGTGKSHLAIGLAVYYCT--ARVVYTAASHAAVDALCEK----AYKFLNINDCTRI 5629 Query: 1846 SPS 1854 P+ Sbjct: 5630 VPA 5632
>Q91A29:R1AB_CVBEN Replicase polyprotein 1ab - Bovine coronavirus (strain| 98TXSF-110-ENT) (BCoV-ENT) (BCV) Length = 7094 Score = 35.4 bits (80), Expect = 1.7 Identities = 24/63 (38%), Positives = 33/63 (52%) Frame = +1 Query: 1666 IQGPPGTGKTVLLTELIVRAVRQGENVLVTAPSNAAVDNMVEKLSSTGLNIVRVGNPARI 1845 +QGPPGTGK+ L L V V+ TA S+AAVD + EK + + + RI Sbjct: 5576 VQGPPGTGKSHLAIGLAVYYCT--ARVVYTAASHAAVDALCEK----AYKFLNINDCTRI 5629 Query: 1846 SPS 1854 P+ Sbjct: 5630 VPA 5632
>A3EXG5:R1AB_BCHK9 Replicase polyprotein 1ab - Bat coronavirus HKU9 (BtCoV) (BtCoV/HKU9)| Length = 6930 Score = 35.4 bits (80), Expect = 1.7 Identities = 28/84 (33%), Positives = 40/84 (47%) Frame = +1 Query: 2659 SPYIAQVQLLREKIEEYPGLSGVEVSTVDSFQGREADAVVLSMVRSNPLGAVGFMGDSRL 2838 SPY +Q + R + G++ TVDS QG E D V+ S+ A+ Sbjct: 5678 SPYNSQNSVARRML-------GLQTQTVDSSQGSEFDYVIYCQT-SDTAHALNV----NR 5725 Query: 2839 MNVAITRARRHVTVVCDTSTICHS 2910 NVAITRA++ + V ST+ S Sbjct: 5726 FNVAITRAKKGILCVMSDSTLYES 5749 Score = 33.1 bits (74), Expect = 8.5 Identities = 19/43 (44%), Positives = 26/43 (60%) Frame = +1 Query: 1666 IQGPPGTGKTVLLTELIVRAVRQGENVLVTAPSNAAVDNMVEK 1794 +QGPPGTGK+ L L + ++ TA S+AAVD + EK Sbjct: 5445 VQGPPGTGKSHLSIGLAL--YYPSAKIVYTACSHAAVDALCEK 5485
>P16342:R1AB_CVMA5 Replicase polyprotein 1ab - Murine coronavirus (strain A59) (MHV-A59)| (Murine hepatitis virus) Length = 7176 Score = 35.0 bits (79), Expect = 2.2 Identities = 21/43 (48%), Positives = 26/43 (60%) Frame = +1 Query: 1666 IQGPPGTGKTVLLTELIVRAVRQGENVLVTAPSNAAVDNMVEK 1794 +QGPPGTGK+ L L V V+ TA S+AAVD + EK Sbjct: 5661 VQGPPGTGKSHLAIGLAVYYCT--ARVVYTAASHAAVDALCEK 5701
>Q9WAC3:R1AB_CVHOC Replicase polyprotein 1ab - Human coronavirus OC43 (HCoV-OC43)| Length = 7095 Score = 35.0 bits (79), Expect = 2.2 Identities = 24/63 (38%), Positives = 33/63 (52%) Frame = +1 Query: 1666 IQGPPGTGKTVLLTELIVRAVRQGENVLVTAPSNAAVDNMVEKLSSTGLNIVRVGNPARI 1845 +QGPPGTGK+ L L V V+ TA S+AAVD + EK + + + RI Sbjct: 5576 VQGPPGTGKSHLAIGLAVFYCT--ARVVYTAASHAAVDALCEK----AYKFLNINDCTRI 5629 Query: 1846 SPS 1854 P+ Sbjct: 5630 VPA 5632
>P32270:DDA_BPT4 ATP-dependent DNA helicase dda - Bacteriophage T4| Length = 439 Score = 35.0 bits (79), Expect = 2.2 Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 5/78 (6%) Frame = +1 Query: 1639 LNKKRPVLVIQGPPGTGKTVLLTELIVRAV--RQGENVLVTAPSNAA---VDNMVEKLSS 1803 + +K+ + I GP GTGKT LT+ I+ A+ G +++ AP++AA + + K +S Sbjct: 21 IKEKKHHVTINGPAGTGKTT-LTKFIIEALISTGGTGIILAAPTHAAKKILSKLSGKEAS 79 Query: 1804 TGLNIVRVGNPARISPSV 1857 T +I+++ NP +V Sbjct: 80 TIHSILKI-NPVTYEENV 96
>P32657:CHD1_YEAST Chromo domain protein 1 - Saccharomyces cerevisiae (Baker's yeast)| Length = 1468 Score = 35.0 bits (79), Expect = 2.2 Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 2/79 (2%) Frame = +1 Query: 1597 YAFDDSQLRALS-LGLNKKRPVLVIQGP-PGTGKTVLLTELIVRAVRQGENVLVTAPSNA 1770 Y FD+++ R L G K V++G +GK VLL +L+ R + G VL+ + Sbjct: 663 YLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVR 722 Query: 1771 AVDNMVEKLSSTGLNIVRV 1827 +D + + LS G+N R+ Sbjct: 723 MLDILGDYLSIKGINFQRL 741
>P09119:CDC6_YEAST Cell division control protein 6 - Saccharomyces cerevisiae (Baker's| yeast) Length = 513 Score = 35.0 bits (79), Expect = 2.2 Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 18/108 (16%) Frame = +1 Query: 1576 DPRLSERYAFDDSQLRALSLGLNKKRP-VLVIQGPPGTGKTVLLTELIVRAVRQGENVLV 1752 D L R A + + L+ +++ R L I GPPGTGKT L ++I+R Q + + Sbjct: 75 DGALPARTAEYEQVMNFLAKAISEHRSDSLYITGPPGTGKTAQL-DMIIRQKFQSLPLSL 133 Query: 1753 TAPSNAAV-----------------DNMVEKLSSTGLNIVRVGNPARI 1845 + P + V D +E ++ T +N + +G P+ I Sbjct: 134 STPRSKDVLRHTNPNLQNLSWFELPDGRLESVAVTSINCISLGEPSSI 181
>Q9HN34:CDC64_HALSA Cell division control protein 6 homolog 4 - Halobacterium salinarium| (Halobacterium halobium) Length = 374 Score = 35.0 bits (79), Expect = 2.2 Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 11/90 (12%) Frame = +1 Query: 1546 LIDWGESSLPDPRL------SERYAFDDSQLRALSLGLNK----KRPVLVI-QGPPGTGK 1692 L+ WGE+ D + E + +SQL+ L L RP+ V+ +GPPGTGK Sbjct: 9 LLGWGETVFRDEHVFEIDYVPEVFRHRESQLQTLQYALRPAVRGSRPLNVVARGPPGTGK 68 Query: 1693 TVLLTELIVRAVRQGENVLVTAPSNAAVDN 1782 T + +L G+ + T N VD+ Sbjct: 69 TTAVQKLF--GELSGQPGVQTVRVNCQVDS 96
>P24125:V51K_BPL79 51.5 kDa protein - Lactococcus bacteriophage isolate 7-9| Length = 452 Score = 34.7 bits (78), Expect = 2.9 Identities = 16/55 (29%), Positives = 29/55 (52%) Frame = +1 Query: 1663 VIQGPPGTGKTVLLTELIVRAVRQGENVLVTAPSNAAVDNMVEKLSSTGLNIVRV 1827 +IQ PPG+GK+V+++E+ A +G VL +D + G+ + +V Sbjct: 1 MIQSPPGSGKSVVISEITKLATEKGGRVLFLVHRKELIDQITNSFKVHGVPLNQV 55
>Q0GNB9:R1AB_IBVM Replicase polyprotein 1ab - Avian infectious bronchitis virus (strain| M41) (IBV) Length = 6631 Score = 34.7 bits (78), Expect = 2.9 Identities = 25/72 (34%), Positives = 36/72 (50%) Frame = +1 Query: 1648 KRPVLVIQGPPGTGKTVLLTELIVRAVRQGENVLVTAPSNAAVDNMVEKLSSTGLNIVRV 1827 K+ +QGPPG+GK+ L A V+ TA S+AAVD + EK ++V Sbjct: 5144 KQKRTTVQGPPGSGKSHFAIGL--AAYFSNARVVFTACSHAAVDALCEK----AFKFLKV 5197 Query: 1828 GNPARISPSVTS 1863 + RI P T+ Sbjct: 5198 DDCTRIVPQRTT 5209 Score = 33.9 bits (76), Expect = 5.0 Identities = 32/108 (29%), Positives = 44/108 (40%) Frame = +1 Query: 2560 TGSFYNDGEADIVTQHVLNLVHCGVSPSEIAIQSPYIAQVQLLREKIEEYPGLSGVEVST 2739 +GS YN + + V V E SPY A Q + G+ V T Sbjct: 5356 SGSAYNITQLEFVKDFVCR----NKEWREATFISPYNAMNQRAYRML-------GLNVQT 5404 Query: 2740 VDSFQGREADAVVLSMVRSNPLGAVGFMGDSRLMNVAITRARRHVTVV 2883 VDS QG E D V+ + + + NVA+TRA+R + VV Sbjct: 5405 VDSSQGSEYDYVIFCVTADSQHAL-----NINRFNVALTRAKRGILVV 5447
>Q91QT2:R1AB_IBVBC Replicase polyprotein 1ab - Avian infectious bronchitis virus (strain| Beaudette CK) (IBV) Length = 6629 Score = 34.7 bits (78), Expect = 2.9 Identities = 25/72 (34%), Positives = 36/72 (50%) Frame = +1 Query: 1648 KRPVLVIQGPPGTGKTVLLTELIVRAVRQGENVLVTAPSNAAVDNMVEKLSSTGLNIVRV 1827 K+ +QGPPG+GK+ L V V+ TA S+AAVD + EK ++V Sbjct: 5142 KQKRTTVQGPPGSGKSHFAIGLAV--YFSSARVVFTACSHAAVDALCEK----AFKFLKV 5195 Query: 1828 GNPARISPSVTS 1863 + RI P T+ Sbjct: 5196 DDCTRIVPQRTT 5207 Score = 34.3 bits (77), Expect = 3.8 Identities = 32/108 (29%), Positives = 44/108 (40%) Frame = +1 Query: 2560 TGSFYNDGEADIVTQHVLNLVHCGVSPSEIAIQSPYIAQVQLLREKIEEYPGLSGVEVST 2739 +GS YN + + V V E SPY A Q + G+ V T Sbjct: 5354 SGSAYNTTQLEFVKDFVCR----NKQWREAIFISPYNAMNQRAYRML-------GLNVQT 5402 Query: 2740 VDSFQGREADAVVLSMVRSNPLGAVGFMGDSRLMNVAITRARRHVTVV 2883 VDS QG E D V+ + + + NVA+TRA+R + VV Sbjct: 5403 VDSSQGSEYDYVIFCVTADSQHAL-----NINRFNVALTRAKRGILVV 5445
>P27920:R1AB_IBVB Replicase polyprotein 1ab - Avian infectious bronchitis virus (strain| Beaudette) (IBV) Length = 6629 Score = 34.7 bits (78), Expect = 2.9 Identities = 25/72 (34%), Positives = 36/72 (50%) Frame = +1 Query: 1648 KRPVLVIQGPPGTGKTVLLTELIVRAVRQGENVLVTAPSNAAVDNMVEKLSSTGLNIVRV 1827 K+ +QGPPG+GK+ L V V+ TA S+AAVD + EK ++V Sbjct: 5142 KQKRTTVQGPPGSGKSHFAIGLAV--YFSSARVVFTACSHAAVDALCEK----AFKFLKV 5195 Query: 1828 GNPARISPSVTS 1863 + RI P T+ Sbjct: 5196 DDCTRIVPQRTT 5207 Score = 34.3 bits (77), Expect = 3.8 Identities = 32/108 (29%), Positives = 44/108 (40%) Frame = +1 Query: 2560 TGSFYNDGEADIVTQHVLNLVHCGVSPSEIAIQSPYIAQVQLLREKIEEYPGLSGVEVST 2739 +GS YN + + V V E SPY A Q + G+ V T Sbjct: 5354 SGSAYNTTQLEFVKDFVCR----NKQWREAIFISPYNAMNQRAYRML-------GLNVQT 5402 Query: 2740 VDSFQGREADAVVLSMVRSNPLGAVGFMGDSRLMNVAITRARRHVTVV 2883 VDS QG E D V+ + + + NVA+TRA+R + VV Sbjct: 5403 VDSSQGSEYDYVIFCVTADSQHAL-----NINRFNVALTRAKRGILVV 5445
>O50248:RADB_METMP DNA repair and recombination protein radB - Methanococcus maripaludis| Length = 216 Score = 34.3 bits (77), Expect = 3.8 Identities = 18/61 (29%), Positives = 32/61 (52%) Frame = +1 Query: 1618 LRALSLGLNKKRPVLVIQGPPGTGKTVLLTELIVRAVRQGENVLVTAPSNAAVDNMVEKL 1797 L L G +K+ + I GPPG GKT + +++A+ G+NV+ + +++L Sbjct: 2 LEELLNGNIEKKTITQIYGPPGVGKTNICIISMLKAIENGKNVVYIDTEGSLSIERIKQL 61 Query: 1798 S 1800 S Sbjct: 62 S 62
>P54777:PEX6_RAT Peroxisome assembly factor 2 - Rattus norvegicus (Rat)| Length = 978 Score = 34.3 bits (77), Expect = 3.8 Identities = 35/105 (33%), Positives = 50/105 (47%), Gaps = 20/105 (19%) Frame = +1 Query: 1627 LSLGLNKKRPVLVIQGPPGTGKTVLL----------------TELIVRAVRQGENVL--V 1752 LSLGL +R L++ GPPGTGKT+L ELI V Q E + V Sbjct: 729 LSLGL--RRSGLLLHGPPGTGKTLLAKAVATECSLTFLSVKGPELINMYVGQSEENVREV 786 Query: 1753 TAPSNAAVDNMV--EKLSSTGLNIVRVGNPARISPSVTSKSLAEI 1881 A + AA ++ ++L S + R G+ + V S+ LAE+ Sbjct: 787 FARARAAAPCIIFFDELDSLAPSRGRSGDSGGVMDRVVSQLLAEL 831
>Q99LC9:PEX6_MOUSE Peroxisome assembly factor 2 - Mus musculus (Mouse)| Length = 981 Score = 34.3 bits (77), Expect = 3.8 Identities = 35/105 (33%), Positives = 50/105 (47%), Gaps = 20/105 (19%) Frame = +1 Query: 1627 LSLGLNKKRPVLVIQGPPGTGKTVLL----------------TELIVRAVRQGENVL--V 1752 LSLGL +R L++ GPPGTGKT+L ELI V Q E + V Sbjct: 732 LSLGL--RRSGLLLHGPPGTGKTLLAKAVATECSLTFLSVKGPELINMYVGQSEENVREV 789 Query: 1753 TAPSNAAVDNMV--EKLSSTGLNIVRVGNPARISPSVTSKSLAEI 1881 A + AA ++ ++L S + R G+ + V S+ LAE+ Sbjct: 790 FARARAAAPCIIFFDELDSLAPSRGRSGDSGGVMDRVVSQLLAEL 834
>Q13608:PEX6_HUMAN Peroxisome assembly factor 2 - Homo sapiens (Human)| Length = 980 Score = 34.3 bits (77), Expect = 3.8 Identities = 35/105 (33%), Positives = 50/105 (47%), Gaps = 20/105 (19%) Frame = +1 Query: 1627 LSLGLNKKRPVLVIQGPPGTGKTVLL----------------TELIVRAVRQGENVL--V 1752 LSLGL +R L++ GPPGTGKT+L ELI V Q E + V Sbjct: 731 LSLGL--RRSGLLLHGPPGTGKTLLAKAVATECSLTFLSVKGPELINMYVGQSEENVREV 788 Query: 1753 TAPSNAAVDNMV--EKLSSTGLNIVRVGNPARISPSVTSKSLAEI 1881 A + AA ++ ++L S + R G+ + V S+ LAE+ Sbjct: 789 FARARAAAPCIIFFDELDSLAPSRGRSGDSGGVMDRVVSQLLAEL 833
>P19751:R1AB_CVMJH Replicase polyprotein 1ab - Murine coronavirus (strain JHM) (MHV-JHM)| (Murine hepatitis virus) Length = 7180 Score = 33.9 bits (76), Expect = 5.0 Identities = 26/64 (40%), Positives = 35/64 (54%), Gaps = 1/64 (1%) Frame = +1 Query: 1666 IQGPPGTGKTVLLTELIVRAVRQ-GENVLVTAPSNAAVDNMVEKLSSTGLNIVRVGNPAR 1842 +QGPPGTGK+ L I AV V+ TA S+AAVD + EK + + + AR Sbjct: 5667 VQGPPGTGKSHL---AIGHAVYYCTARVVYTAASHAAVDALCEKAH----KFLNINDCAR 5719 Query: 1843 ISPS 1854 I P+ Sbjct: 5720 IVPA 5723
>Q8TUI2:CDC62_METAC Cell division control protein 6 homolog 2 - Methanosarcina| acetivorans Length = 373 Score = 33.9 bits (76), Expect = 5.0 Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 5/95 (5%) Frame = +1 Query: 1513 GKDVMKMEQNCLIDWGESSLPDPRLSERYAFDDSQLRALSLGLNKK----RPV-LVIQGP 1677 G D++ ++ D S L L E + DSQL AL L RP+ ++ GP Sbjct: 3 GNDILLWDETLFKDL--SVLEPDYLPEYFPHRDSQLNALRFALRPSLRGMRPLNCLLVGP 60 Query: 1678 PGTGKTVLLTELIVRAVRQGENVLVTAPSNAAVDN 1782 PGTGKT + + + R V +V N +D+ Sbjct: 61 PGTGKTSAVMK-VFREVEVHAPGVVAVKVNCQIDS 94
>P26929:URE1_LACFE Urease subunit alpha - Lactobacillus fermentum| Length = 573 Score = 33.5 bits (75), Expect = 6.5 Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 3/66 (4%) Frame = +1 Query: 1969 DSLAAGIRQLLKQLGRDLEMKEKETIM---EVLSDAQVVLSTNTGAADPLIRKIGCFDLV 2139 DS+ G L ++ +DL + +E++ +VL D V +T T A +P++ + D + Sbjct: 20 DSVRLGDTDLFAKIEKDLTVHGQESLFGGGKVLRDGMGVSATETRAENPMVADLIISDAI 79 Query: 2140 IIDEAG 2157 IID G Sbjct: 80 IIDWTG 85
>O27728:RADB_METTH DNA repair and recombination protein radB - Methanobacterium| thermoautotrophicum Length = 234 Score = 33.5 bits (75), Expect = 6.5 Identities = 20/60 (33%), Positives = 32/60 (53%) Frame = +1 Query: 1570 LPDPRLSERYAFDDSQLRALSLGLNKKRPVLVIQGPPGTGKTVLLTELIVRAVRQGENVL 1749 L D + R + S R L G+ ++R + GPPG+GKT + +L V R+G+N + Sbjct: 4 LRDMGENRRIPTESSIDRILGGGV-ERRTITQFYGPPGSGKTNITIKLAVETARRGKNTV 62
>Q57702:RADB_METJA DNA repair and recombination protein radB - Methanococcus jannaschii| Length = 212 Score = 33.5 bits (75), Expect = 6.5 Identities = 18/68 (26%), Positives = 35/68 (51%) Frame = +1 Query: 1618 LRALSLGLNKKRPVLVIQGPPGTGKTVLLTELIVRAVRQGENVLVTAPSNAAVDNMVEKL 1797 L+ + LG +K + I GPPG GKT + + AV G+ + + +++ ++++ Sbjct: 2 LKEILLGNAEKGIITQIYGPPGVGKTNICIINSINAVNSGKVIYIDTEGGLSIER-IKQI 60 Query: 1798 SSTGLNIV 1821 +S IV Sbjct: 61 ASNNYKIV 68
>P18458:R1AB_BEV Replicase polyprotein 1ab - Berne virus (BEV)| Length = 6857 Score = 33.5 bits (75), Expect = 6.5 Identities = 15/47 (31%), Positives = 24/47 (51%) Frame = +1 Query: 1657 VLVIQGPPGTGKTVLLTELIVRAVRQGENVLVTAPSNAAVDNMVEKL 1797 V + GPPGTGKT + + + + AP++ V +M EK+ Sbjct: 5662 VTFVMGPPGTGKTTFVYDTYLSKASSSNRFVYCAPTHRLVGDMDEKV 5708
>P03302:POLG_POL3L Genome polyprotein [Contains: Capsid protein VP4 - Poliovirus type 3| (strains P3/Leon/37 and P3/Leon 12A[1]B) Length = 2206 Score = 33.5 bits (75), Expect = 6.5 Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 10/69 (14%) Frame = +1 Query: 1567 SLPDPRLSERYAFDDSQLRALSLGLN---------KKRPV-LVIQGPPGTGKTVLLTELI 1716 S+ R + YA + +++ L +N + PV L++ G PGTGK+V T LI Sbjct: 1208 SIQSKRFAPLYALEAKRIQKLEHTINNYIQFKSKHRIEPVCLLVHGSPGTGKSV-ATNLI 1266 Query: 1717 VRAVRQGEN 1743 RA+ + EN Sbjct: 1267 ARAIAEKEN 1275
>P06209:POLG_POL32 Genome polyprotein [Contains: Capsid protein VP4 - Poliovirus type 3| (strain 23127) Length = 2206 Score = 33.5 bits (75), Expect = 6.5 Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 10/69 (14%) Frame = +1 Query: 1567 SLPDPRLSERYAFDDSQLRALSLGLN---------KKRPV-LVIQGPPGTGKTVLLTELI 1716 S+ R + YA + +++ L +N + PV L++ G PGTGK+V T LI Sbjct: 1208 SIQSKRFAPLYALEAKRIQKLEHTINNYIQFKSKHRIEPVCLLVHGSPGTGKSV-ATNLI 1266 Query: 1717 VRAVRQGEN 1743 RA+ + EN Sbjct: 1267 ARAIAEKEN 1275
>Q6BS73:PEX6_DEBHA Peroxisomal biogenesis factor 6 - Debaryomyces hansenii (Yeast)| (Torulaspora hansenii) Length = 1198 Score = 33.5 bits (75), Expect = 6.5 Identities = 33/116 (28%), Positives = 48/116 (41%), Gaps = 5/116 (4%) Frame = +1 Query: 1369 KSVRIDRIQGLADALTYERNLEALMLLQRNGLLK-----SNASIDVVATLFGDGKDVMKM 1533 K + I R+ GLA +LE L+ + GL+ N +I+ F D ++ Sbjct: 776 KRLAISRLMGLAKDSNI--SLEKLIKVGNGGLITWIPEDFNKAINDARNQFSDSIGAPRI 833 Query: 1534 EQNCLIDWGESSLPDPRLSERYAFDDSQLRALSLGLNKKRPVLVIQGPPGTGKTVL 1701 D G L + + S GL KKR ++ GPPGTGKT+L Sbjct: 834 PDVKWEDIGGLDLVKDEIMDTIDMPLKHPELFSNGL-KKRSGILFYGPPGTGKTLL 888
>Q5BJS0:DHX30_RAT Putative ATP-dependent RNA helicase DHX30 - Rattus norvegicus (Rat)| Length = 1194 Score = 33.5 bits (75), Expect = 6.5 Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 5/57 (8%) Frame = +1 Query: 1645 KKRPVLVIQGPPGTGKTVLLTELIV-RAVRQGE----NVLVTAPSNAAVDNMVEKLS 1800 ++ PV+VI G G GKT + +L++ R V +G NV++T P + ++ +++S Sbjct: 448 EQHPVVVISGDTGCGKTTRIPQLLLERYVTEGRGARCNVIITQPRRISAVSVAQRVS 504
>Q5R607:DHX30_PONPY Putative ATP-dependent RNA helicase DHX30 - Pongo pygmaeus| (Orangutan) Length = 1194 Score = 33.5 bits (75), Expect = 6.5 Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 5/57 (8%) Frame = +1 Query: 1645 KKRPVLVIQGPPGTGKTVLLTELIV-RAVRQGE----NVLVTAPSNAAVDNMVEKLS 1800 ++ PV+VI G G GKT + +L++ R V +G NV++T P + ++ +++S Sbjct: 448 EQHPVVVISGDTGCGKTTRIPQLLLERYVTEGRGARCNVIITQPRRISAVSVAQRVS 504
>Q99PU8:DHX30_MOUSE Putative ATP-dependent RNA helicase DHX30 - Mus musculus (Mouse)| Length = 1217 Score = 33.5 bits (75), Expect = 6.5 Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 5/57 (8%) Frame = +1 Query: 1645 KKRPVLVIQGPPGTGKTVLLTELIV-RAVRQGE----NVLVTAPSNAAVDNMVEKLS 1800 ++ PV+VI G G GKT + +L++ R V +G NV++T P + ++ +++S Sbjct: 471 EQHPVVVISGDTGCGKTTRIPQLLLERYVTEGRGARCNVIITQPRRISAVSVAQRVS 527
>Q7L2E3:DHX30_HUMAN Putative ATP-dependent RNA helicase DHX30 - Homo sapiens (Human)| Length = 1194 Score = 33.5 bits (75), Expect = 6.5 Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 5/57 (8%) Frame = +1 Query: 1645 KKRPVLVIQGPPGTGKTVLLTELIV-RAVRQGE----NVLVTAPSNAAVDNMVEKLS 1800 ++ PV+VI G G GKT + +L++ R V +G NV++T P + ++ +++S Sbjct: 448 EQHPVVVISGDTGCGKTTRIPQLLLERYVTEGRGARCNVIITQPRRISAVSVAQRVS 504
>Q9HB09:B2L12_HUMAN Bcl-2-related proline-rich protein - Homo sapiens (Human)| Length = 334 Score = 33.5 bits (75), Expect = 6.5 Identities = 22/77 (28%), Positives = 34/77 (44%) Frame = +1 Query: 1573 PDPRLSERYAFDDSQLRALSLGLNKKRPVLVIQGPPGTGKTVLLTELIVRAVRQGENVLV 1752 P P + YA +L L K P +QGPP T K +L L+ + E + Sbjct: 167 PGPATPDFYALVAQRLEQLVQEQLKSPPSPELQGPPSTEKEAILRRLVALLEEEAEVINQ 226 Query: 1753 TAPSNAAVDNMVEKLSS 1803 S+ A+ + + +LSS Sbjct: 227 KLASDPALRSKLVRLSS 243
>P18850:ATF6A_HUMAN Cyclic AMP-dependent transcription factor ATF-6 alpha - Homo sapiens| (Human) Length = 670 Score = 33.5 bits (75), Expect = 6.5 Identities = 32/94 (34%), Positives = 49/94 (52%) Frame = +1 Query: 1639 LNKKRPVLVIQGPPGTGKTVLLTELIVRAVRQGENVLVTAPSNAAVDNMVEKLSSTGLNI 1818 L K++P++ +Q P G+TVLL++ V + Q VL +A AV V +L + +N+ Sbjct: 214 LAKQQPIISLQPAPTKGQTVLLSQPTVVQL-QAPGVLPSAQPVLAVAGGVTQLPNHVVNV 272 Query: 1819 VRVGNPARISPSVTSKSLAEIVNGRLSQFRKELE 1920 V PA PS S VNG+LS + L+ Sbjct: 273 V----PA---PSANSP-----VNGKLSVTKPVLQ 294
>A3EXC9:R1AB_BCHK5 Replicase polyprotein 1ab - Bat coronavirus HKU5 (BtCoV)| (BtCoV/HKU5/2004) Length = 7182 Score = 33.1 bits (74), Expect = 8.5 Identities = 22/65 (33%), Positives = 33/65 (50%) Frame = +1 Query: 1660 LVIQGPPGTGKTVLLTELIVRAVRQGENVLVTAPSNAAVDNMVEKLSSTGLNIVRVGNPA 1839 + +QGPPGTGK+ L + V+ TA S+AAVD + EK + + + Sbjct: 5679 VTVQGPPGTGKSHFAIGLAI--YYPTARVVYTACSHAAVDALCEK----AFKYLNIAKCS 5732 Query: 1840 RISPS 1854 RI P+ Sbjct: 5733 RIIPA 5737
>Q3LZX2:R1AB_BCHK3 Replicase polyprotein 1ab - Bat coronavirus HKU3 (BtCoV) (SARS-like| coronavirus HKU3) Length = 7067 Score = 33.1 bits (74), Expect = 8.5 Identities = 27/92 (29%), Positives = 42/92 (45%) Frame = +1 Query: 1579 PRLSERYAFDDSQLRALSLGLNKKRPVLVIQGPPGTGKTVLLTELIVRAVRQGENVLVTA 1758 P L+ F + +G+ K +QGPPGTGK+ L + ++ TA Sbjct: 5549 PTLNISNEFSSNVANYQKIGMQKYS---TLQGPPGTGKSHFAIGLAL--YYPSARIVYTA 5603 Query: 1759 PSNAAVDNMVEKLSSTGLNIVRVGNPARISPS 1854 S+AAVD + EK L + + +RI P+ Sbjct: 5604 CSHAAVDALCEK----ALKYLPIDKCSRIIPA 5631
>Q92HH1:PRIA_RICCN Primosomal protein N' - Rickettsia conorii| Length = 648 Score = 33.1 bits (74), Expect = 8.5 Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 1/98 (1%) Frame = +1 Query: 1609 DSQLRALSLGLNKKRPVLVIQGPPGTGKTVLLTELIVRAVRQGENVLVTAPSNAAVDNMV 1788 + Q +A+++ LN+ +++G G+GKT + LI + +G+ VLV P A ++ Sbjct: 124 EEQKQAVTI-LNESNKPTLVKGVTGSGKTEIYFHLIADYLAKGKQVLVMLPEIALSTQII 182 Query: 1789 EKLSSTGLNIVRVG-NPARISPSVTSKSLAEIVNGRLS 1899 + I R G P + SVT I+ G LS Sbjct: 183 NRF------IERFGFEPIIWNSSVTKAHKKMILRGILS 214
>P06210:POLG_POL2L Genome polyprotein [Contains: Capsid protein VP4 - Poliovirus type 2| (strain Lansing) Length = 2207 Score = 33.1 bits (74), Expect = 8.5 Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 10/69 (14%) Frame = +1 Query: 1567 SLPDPRLSERYAFDDSQLRALSLGLN---------KKRPV-LVIQGPPGTGKTVLLTELI 1716 S+ R + YA + +++ L +N + PV L++ G PGTGK+V T LI Sbjct: 1209 SIQSKRFAPLYAVEAKRIQKLEHTINNYVQFKSKHRIEPVCLLVHGSPGTGKSV-ATNLI 1267 Query: 1717 VRAVRQGEN 1743 RA+ + EN Sbjct: 1268 ARAIAEKEN 1276
>P03301:POLG_POL1S Genome polyprotein [Contains: Capsid protein VP4 - Poliovirus type 1| (strain Sabin) Length = 2209 Score = 33.1 bits (74), Expect = 8.5 Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 10/69 (14%) Frame = +1 Query: 1567 SLPDPRLSERYAFDDSQLRALSLGLN---------KKRPV-LVIQGPPGTGKTVLLTELI 1716 S+ R + YA + +++ L +N + PV L++ G PGTGK+V T LI Sbjct: 1211 SIQSKRFAPLYAVEAKRIQKLEHTINNYIQFKSKHRIEPVCLLVHGSPGTGKSV-ATNLI 1269 Query: 1717 VRAVRQGEN 1743 RA+ + EN Sbjct: 1270 ARAIAEREN 1278
>P03300:POLG_POL1M Genome polyprotein [Contains: Capsid protein VP4 - Poliovirus type 1| (strain Mahoney) Length = 2209 Score = 33.1 bits (74), Expect = 8.5 Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 10/69 (14%) Frame = +1 Query: 1567 SLPDPRLSERYAFDDSQLRALSLGLN---------KKRPV-LVIQGPPGTGKTVLLTELI 1716 S+ R + YA + +++ L +N + PV L++ G PGTGK+V T LI Sbjct: 1211 SIQSKRFAPLYAVEAKRIQKLEHTINNYIQFKSKHRIEPVCLLVHGSPGTGKSV-ATNLI 1269 Query: 1717 VRAVRQGEN 1743 RA+ + EN Sbjct: 1270 ARAIAEREN 1278
>Q2NKY8:DHX30_BOVIN Putative ATP-dependent RNA helicase DHX30 - Bos taurus (Bovine)| Length = 1220 Score = 33.1 bits (74), Expect = 8.5 Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 5/57 (8%) Frame = +1 Query: 1645 KKRPVLVIQGPPGTGKTVLLTELIV-RAVRQGE----NVLVTAPSNAAVDNMVEKLS 1800 ++ PV+VI G G GKT + +L++ R V +G NV++T P + ++ +++S Sbjct: 474 EQHPVVVIAGDTGCGKTTRIPQLLLERYVTEGRGARCNVIITQPRRISAVSVAQRVS 530
>P58938:BCSC_XANAC Cellulose synthase operon protein C precursor - Xanthomonas| axonopodis pv. citri Length = 1508 Score = 33.1 bits (74), Expect = 8.5 Identities = 17/33 (51%), Positives = 22/33 (66%) Frame = +1 Query: 925 RIEDFVRHMSDLLRIERDAELEFTQEELNATTM 1023 RIED +++ S LLR +DAEL +L ATTM Sbjct: 647 RIEDRLQYASVLLRAHQDAELSAVLRQLQATTM 679 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 650,730,624 Number of extensions: 15052952 Number of successful extensions: 45780 Number of sequences better than 10.0: 92 Number of HSP's gapped: 45605 Number of HSP's successfully gapped: 133 Length of query: 1199 Length of database: 100,686,439 Length adjustment: 125 Effective length of query: 1074 Effective length of database: 66,399,564 Effective search space: 71313131736 Effective search space used: 71313131736 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
