ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf2m05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1P19893:VIE2_HCMVA 45 kDa immediate-early protein 2 - Human cytom... 31 1.1
2P13202:VIE1_HCMVA 55 kDa immediate-early protein 1 - Human cytom... 31 1.1
3P12860:G3PB_SPIOL Glyceraldehyde-3-phosphate dehydrogenase B, ch... 30 2.6
4P03169:VIE1_HCMVT 55 kDa immediate-early protein 1 - Human cytom... 30 3.3
5Q136R8:KUP1_RHOPS Probable potassium transport system protein ku... 29 4.3
6P12859:G3PB_PEA Glyceraldehyde-3-phosphate dehydrogenase B, chlo... 29 4.4
7P25857:G3PB_ARATH Glyceraldehyde-3-phosphate dehydrogenase B, ch... 29 4.4
8Q06135:GAS2_YEAST Glycolipid-anchored surface protein 2 precurso... 29 5.7
9Q64566:AT2C1_RAT Calcium-transporting ATPase type 2C member 1 - ... 28 7.4
10P98194:AT2C1_HUMAN Calcium-transporting ATPase type 2C member 1 ... 28 7.4
11Q80XR2:AT2C1_MOUSE Calcium-transporting ATPase type 2C member 1 ... 28 9.7
12P57709:AT2C1_BOVIN Calcium-transporting ATPase type 2C member 1 ... 28 9.7

>P19893:VIE2_HCMVA 45 kDa immediate-early protein 2 - Human cytomegalovirus (strain|
           AD169) (HHV-5) (Human herpesvirus 5)
          Length = 580
 Score = 31.2 bits (69), Expect = 1.1
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +3

Query: 9   TFSSTFLRTKCEXXXXXXXXXXXXXPPELAQKVTESIKQAEEFCEDNPETD 161
           T ++TFL+T                 PELA++  ++ +Q  E C +NPE D
Sbjct: 30  TKATTFLQTMLRKEVNSQLSLGDPLFPELAEESLKTFEQVTEDCNENPEKD 80



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>P13202:VIE1_HCMVA 55 kDa immediate-early protein 1 - Human cytomegalovirus (strain|
           AD169) (HHV-5) (Human herpesvirus 5)
          Length = 491

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +3

Query: 9   TFSSTFLRTKCEXXXXXXXXXXXXXPPELAQKVTESIKQAEEFCEDNPETD 161
           T ++TFL+T                 PELA++  ++ +Q  E C +NPE D
Sbjct: 30  TKATTFLQTMLRKEVNSQLSLGDPLFPELAEESLKTFEQVTEDCNENPEKD 80



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>P12860:G3PB_SPIOL Glyceraldehyde-3-phosphate dehydrogenase B, chloroplast precursor -|
           Spinacia oleracea (Spinach)
          Length = 451

 Score = 30.0 bits (66), Expect = 2.6
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +3

Query: 129 EEFCEDNPETDECRTYD 179
           E+FC+DNP  +EC+ Y+
Sbjct: 435 EDFCKDNPADEECKLYE 451



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>P03169:VIE1_HCMVT 55 kDa immediate-early protein 1 - Human cytomegalovirus (strain|
           Towne) (HHV-5) (Human herpesvirus 5)
          Length = 491

 Score = 29.6 bits (65), Expect = 3.3
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +3

Query: 9   TFSSTFLRTKCEXXXXXXXXXXXXXPPELAQKVTESIKQAEEFCEDNPETD 161
           T ++TFL+T                 PELA++  ++ ++  E C +NPE D
Sbjct: 30  TKATTFLQTMLRKEVNSQLSLGDPLFPELAEESLKTFERVTEDCNENPEKD 80



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>Q136R8:KUP1_RHOPS Probable potassium transport system protein kup 1 -|
           Rhodopseudomonas palustris (strain BisB5)
          Length = 634

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 17/39 (43%), Positives = 24/39 (61%)
 Frame = +1

Query: 205 LLPLPAVIMSGSFELSFRGTLASWACKFGLLLYLAWLTI 321
           +LPL   I+ G F + FRGT A+ A  FG ++ L W T+
Sbjct: 154 ILPLSMAILIGLFVVQFRGT-AAVAAWFGPIM-LLWFTV 190



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>P12859:G3PB_PEA Glyceraldehyde-3-phosphate dehydrogenase B, chloroplast precursor -|
           Pisum sativum (Garden pea)
          Length = 451

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 129 EEFCEDNPETDECRTYD 179
           E+FCE NP  +EC+ Y+
Sbjct: 435 EDFCETNPADEECKVYE 451



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>P25857:G3PB_ARATH Glyceraldehyde-3-phosphate dehydrogenase B, chloroplast precursor -|
           Arabidopsis thaliana (Mouse-ear cress)
          Length = 447

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 129 EEFCEDNPETDECRTYD 179
           E+FC+ NP  +EC+ YD
Sbjct: 431 EDFCKTNPADEECKVYD 447



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>Q06135:GAS2_YEAST Glycolipid-anchored surface protein 2 precursor - Saccharomyces|
           cerevisiae (Baker's yeast)
          Length = 555

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +3

Query: 105 VTESIKQAEEFCEDNPETDECRTYDS*-PCELVPASAIAGRHHE 233
           +   + +A E   + P+  +C   D   PCE+VP  A +G++ E
Sbjct: 370 IAVGVWEANEKLPETPDRSKCACLDEILPCEIVPFGAESGKYEE 413



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>Q64566:AT2C1_RAT Calcium-transporting ATPase type 2C member 1 - Rattus norvegicus|
           (Rat)
          Length = 919

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -1

Query: 354 LVILQTNRCSLYCKPSQIKQQTKLTRPRCQCATEAKLEATAHDD 223
           L+++       Y     +++ +KL  P C C  E KLE T   D
Sbjct: 111 LIVVTVAFVQEYRSEKSLEELSKLVPPECHCVREGKLEHTLARD 154



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>P98194:AT2C1_HUMAN Calcium-transporting ATPase type 2C member 1 - Homo sapiens (Human)|
          Length = 919

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -1

Query: 354 LVILQTNRCSLYCKPSQIKQQTKLTRPRCQCATEAKLEATAHDD 223
           L+++       Y     +++ +KL  P C C  E KLE T   D
Sbjct: 111 LIVVTVAFVQEYRSEKSLEELSKLVPPECHCVREGKLEHTLARD 154



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>Q80XR2:AT2C1_MOUSE Calcium-transporting ATPase type 2C member 1 - Mus musculus (Mouse)|
          Length = 918

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -1

Query: 321 YCKPSQIKQQTKLTRPRCQCATEAKLEATAHDD 223
           Y     +++ +KL  P C C  E KLE T   D
Sbjct: 122 YRSEKSLEELSKLVPPECHCVREGKLEHTLARD 154



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>P57709:AT2C1_BOVIN Calcium-transporting ATPase type 2C member 1 - Bos taurus (Bovine)|
          Length = 953

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -1

Query: 354 LVILQTNRCSLYCKPSQIKQQTKLTRPRCQCATEAKLEATAHDD 223
           L+++       Y     +++ +KL  P C C  E KLE T   D
Sbjct: 145 LIVVTVAFVQEYRSEKSLEELSKLMPPECHCVREGKLEHTLARD 188


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 47,845,039
Number of extensions: 767152
Number of successful extensions: 1638
Number of sequences better than 10.0: 12
Number of HSP's gapped: 1638
Number of HSP's successfully gapped: 12
Length of query: 132
Length of database: 100,686,439
Length adjustment: 98
Effective length of query: 34
Effective length of database: 73,805,529
Effective search space: 2509387986
Effective search space used: 2509387986
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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