Clone Information

BLAST Search Result

Clone Name	FLbaf10n10
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|BT009447.1\| Triticum aestivum clone wlmk8.pk0015.h6:fis, full...	353	3e-94
2	ref\|NM_001067775.1\| Oryza sativa (japonica cultivar-group) Os08g...	172	7e-40
3	dbj\|AK102764.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	172	7e-40
4	dbj\|AK064336.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	172	7e-40
5	dbj\|AP008214.1\| Oryza sativa (japonica cultivar-group) genomic D...	159	1e-35
6	dbj\|AP003919.3\| Oryza sativa (japonica cultivar-group) genomic D...	159	1e-35
7	dbj\|AP003875.3\| Oryza sativa (japonica cultivar-group) genomic D...	159	1e-35
8	gb\|AY104212.1\| Zea mays PCO098672 mRNA sequence	84	5e-13
9	gb\|CP000482.1\| Pelobacter propionicus DSM 2379, complete genome	48	0.027
10	gb\|CP000473.1\| Solibacter usitatus Ellin6076, complete genome	46	0.10
11	dbj\|AP008226.1\| Thermus thermophilus HB8 genomic DNA, complete g...	46	0.10
12	gb\|CP000096.1\| Pelodictyon luteolum DSM 273, complete genome	44	0.41
13	gb\|AE016818.1\| Ashbya gossypii (= Eremothecium gossypii) ATCC 10...	42	1.6
14	ref\|NM_210476.1\| Eremothecium gossypii AER265Wp (AER265W), mRNA	42	1.6
15	gb\|CP000477.1\| Methanosaeta thermophila PT, complete genome	40	6.5
16	gb\|CP000316.1\| Polaromonas sp. JS666, complete genome	40	6.5
17	gb\|AC108501.2\| Oryza sativa (japonica cultivar-group) chromosome...	40	6.5
18	gb\|AC104710.2\| Oryza sativa (japonica cultivar-group) chromosome...	40	6.5
19	dbj\|AP008218.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.5
20	dbj\|AP008215.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.5
21	dbj\|AP008211.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.5
22	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.5
23	emb\|AL365434.13\| Human DNA sequence from clone RP11-236B18 on ch...	40	6.5
24	dbj\|AB183847.1\| Streptococcus suis purH, purD genes, partial cds...	40	6.5
25	dbj\|AB183846.1\| Streptococcus suis purH, purD genes, partial cds...	40	6.5
26	dbj\|AB183833.1\| Streptococcus suis purH, purD genes, partial cds...	40	6.5
27	dbj\|AB183832.1\| Streptococcus suis purH, sepS6, purD genes, part...	40	6.5
28	dbj\|AB183831.1\| Streptococcus suis purH, sepS5, purD genes, part...	40	6.5
29	dbj\|AB183830.1\| Streptococcus suis purH, sepS4, purD genes, part...	40	6.5
30	gb\|AC090056.2\|AC090056 Oryza sativa chromosome 9 clone PAC0663H0...	40	6.5
31	dbj\|AP006758.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.5
32	gb\|AY193836.1\| Vigna unguiculata aminoimidazolecarboximide ribon...	40	6.5
33	dbj\|AB058944.2\| Streptococcus suis purH, ssuMA, ssuMB, ssuRA, ss...	40	6.5
34	dbj\|AB058943.2\| Streptococcus suis purH, ssuMA, ssuMB, ssuRA, ss...	40	6.5
35	dbj\|AB058942.2\| Streptococcus suis purH, ssuMA, ssuMB, ssuRA, ss...	40	6.5
36	dbj\|AB058941.2\| Streptococcus suis purH, ssuMA, ssuMB, ssuRA, ss...	40	6.5
37	dbj\|AP004136.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.5
38	emb\|BX322567.4\| Zebrafish DNA sequence from clone CH211-240G9 in...	40	6.5
39	emb\|AL844879.5\|CNS08CB2 Oryza sativa chromosome 12, . BAC OSJNBa...	40	6.5
40	dbj\|AB045609.1\| Streptococcus suis purF, purM, purN, purH, ssuMA...	40	6.5
41	gb\|AE016853.1\| Pseudomonas syringae pv. tomato str. DC3000 compl...	40	6.5

>gb|BT009447.1| Triticum aestivum clone wlmk8.pk0015.h6:fis, full insert mRNA
           sequence
          Length = 1206
 Score =  353 bits (178), Expect = 3e-94
 Identities = 277/310 (89%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcgacgccttcttcccatttgcctggaaggacgccgtggaggaggcatgcgagaacggca 60
           |||||||||||||||||||  | |||||||| ||||||||||| || || ||||||||||
Sbjct: 644 gcgacgccttcttcccattcccttggaaggatgccgtggaggaagcgtgtgagaacggca 703

                                                                       
Query: 61  tcggtacgatcgcgcagcccggcggcagcatcagggacaaggatgccgtcgagtgctgca 120
           |||| |||||||||||||| ||||||||||| ||||||||||||||||| || |||||||
Sbjct: 704 tcggcacgatcgcgcagcctggcggcagcatgagggacaaggatgccgttgactgctgca 763

                                                                       
Query: 121 acaagtacggtgtctccctcctcttcaccggcgtccgccacttcaggcactgagcctaac 180
           | |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 ataagtacggcgtgtccctcctcttcaccggcgtccgccacttcaggcactgagcctaac 823

                                                                       
Query: 181 ctgagtccataaggtcatatcactggtctactgttagtcagtctgccgcggaaactcgcg 240
           |||||  | ||||| | |||||| ||||||  | ||||||||| |||||||||||| |||
Sbjct: 824 ctgagcacttaaggccgtatcaccggtctatcggtagtcagtccgccgcggaaacttgcg 883

                                                                       
Query: 241 gatgtttgtcgcaataagacaggcgcaggtggtcttgcgtccaactaggaataactgtat 300
           ||||||||||||||||||||||||||||||| |  || |||||||||||| ||| |||||
Sbjct: 884 gatgtttgtcgcaataagacaggcgcaggtgattctgagtccaactaggattaattgtat 943

                     
Query: 301 gacggcggcg 310
           ||||| ||||
Sbjct: 944 gacggtggcg 953



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 81/91 (89%), Gaps = 3/91 (3%)
 Strand = Plus / Plus

                                                                        
Query: 344  tcacattgctgagccagcagcggctgggta--accaaggtcagaaaacca-gagccatgt 400
            ||||||||||||||||||||||||||||||  | ||||||| |||||||| | |||||||
Sbjct: 998  tcacattgctgagccagcagcggctgggtaataacaaggtcggaaaaccaggggccatgt 1057

                                           
Query: 401  gctagttaaactaagcagaaactgcgtttgt 431
             |||||||||| ||||| |||||| ||||||
Sbjct: 1058 actagttaaaccaagcaaaaactgtgtttgt 1088

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>ref|NM_001067775.1| Oryza sativa (japonica cultivar-group) Os08g0206600 (Os08g0206600)
            mRNA, complete cds
          Length = 2104

 Score =  172 bits (87), Expect = 7e-40
 Identities = 147/167 (88%)
 Strand = Plus / Plus

                                                                        
Query: 9    ttcttcccatttgcctggaaggacgccgtggaggaggcatgcgagaacggcatcggtacg 68
            ||||||||||| || ||||| ||||||||||||||||| ||| |||||||||||||   |
Sbjct: 1700 ttcttcccattcgcttggaacgacgccgtggaggaggcgtgccagaacggcatcggcgtg 1759

                                                                        
Query: 69   atcgcgcagcccggcggcagcatcagggacaaggatgccgtcgagtgctgcaacaagtac 128
            |||||| ||||  |||||||||| ||||||   || |||||||| |||||||||||||||
Sbjct: 1760 atcgcggagccgagcggcagcatgagggacggcgacgccgtcgactgctgcaacaagtac 1819

                                                           
Query: 129  ggtgtctccctcctcttcaccggcgtccgccacttcaggcactgagc 175
            || |||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 1820 ggcgtctccctcctcttcaccggcgtcaggcacttcaggcactgagc 1866

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>dbj|AK102764.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033107D20, full
            insert sequence
          Length = 2106

 Score =  172 bits (87), Expect = 7e-40
 Identities = 147/167 (88%)
 Strand = Plus / Plus

                                                                        
Query: 9    ttcttcccatttgcctggaaggacgccgtggaggaggcatgcgagaacggcatcggtacg 68
            ||||||||||| || ||||| ||||||||||||||||| ||| |||||||||||||   |
Sbjct: 1706 ttcttcccattcgcttggaacgacgccgtggaggaggcgtgccagaacggcatcggcgtg 1765

                                                                        
Query: 69   atcgcgcagcccggcggcagcatcagggacaaggatgccgtcgagtgctgcaacaagtac 128
            |||||| ||||  |||||||||| ||||||   || |||||||| |||||||||||||||
Sbjct: 1766 atcgcggagccgagcggcagcatgagggacggcgacgccgtcgactgctgcaacaagtac 1825

                                                           
Query: 129  ggtgtctccctcctcttcaccggcgtccgccacttcaggcactgagc 175
            || |||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 1826 ggcgtctccctcctcttcaccggcgtcaggcacttcaggcactgagc 1872

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>dbj|AK064336.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-107-G10, full
            insert sequence
          Length = 2123

 Score =  172 bits (87), Expect = 7e-40
 Identities = 147/167 (88%)
 Strand = Plus / Plus

                                                                        
Query: 9    ttcttcccatttgcctggaaggacgccgtggaggaggcatgcgagaacggcatcggtacg 68
            ||||||||||| || ||||| ||||||||||||||||| ||| |||||||||||||   |
Sbjct: 1700 ttcttcccattcgcttggaacgacgccgtggaggaggcgtgccagaacggcatcggcgtg 1759

                                                                        
Query: 69   atcgcgcagcccggcggcagcatcagggacaaggatgccgtcgagtgctgcaacaagtac 128
            |||||| ||||  |||||||||| ||||||   || |||||||| |||||||||||||||
Sbjct: 1760 atcgcggagccgagcggcagcatgagggacggcgacgccgtcgactgctgcaacaagtac 1819

                                                           
Query: 129  ggtgtctccctcctcttcaccggcgtccgccacttcaggcactgagc 175
            || |||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 1820 ggcgtctccctcctcttcaccggcgtcaggcacttcaggcactgagc 1866

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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8
          Length = 28434780

 Score =  159 bits (80), Expect = 1e-35
 Identities = 134/152 (88%)
 Strand = Plus / Plus

                                                                           
Query: 24      tggaaggacgccgtggaggaggcatgcgagaacggcatcggtacgatcgcgcagcccggc 83
               ||||| ||||||||||||||||| ||| |||||||||||||   ||||||| ||||  ||
Sbjct: 6217306 tggaacgacgccgtggaggaggcgtgccagaacggcatcggcgtgatcgcggagccgagc 6217365

                                                                           
Query: 84      ggcagcatcagggacaaggatgccgtcgagtgctgcaacaagtacggtgtctccctcctc 143
               |||||||| ||||||   || |||||||| ||||||||||||||||| ||||||||||||
Sbjct: 6217366 ggcagcatgagggacggcgacgccgtcgactgctgcaacaagtacggcgtctccctcctc 6217425

                                               
Query: 144     ttcaccggcgtccgccacttcaggcactgagc 175
               |||||||||||| | |||||||||||||||||
Sbjct: 6217426 ttcaccggcgtcaggcacttcaggcactgagc 6217457

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>dbj|AP003919.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
            clone:OJ1734_E04
          Length = 101439

 Score =  159 bits (80), Expect = 1e-35
 Identities = 134/152 (88%)
 Strand = Plus / Plus

                                                                        
Query: 24   tggaaggacgccgtggaggaggcatgcgagaacggcatcggtacgatcgcgcagcccggc 83
            ||||| ||||||||||||||||| ||| |||||||||||||   ||||||| ||||  ||
Sbjct: 3443 tggaacgacgccgtggaggaggcgtgccagaacggcatcggcgtgatcgcggagccgagc 3502

                                                                        
Query: 84   ggcagcatcagggacaaggatgccgtcgagtgctgcaacaagtacggtgtctccctcctc 143
            |||||||| ||||||   || |||||||| ||||||||||||||||| ||||||||||||
Sbjct: 3503 ggcagcatgagggacggcgacgccgtcgactgctgcaacaagtacggcgtctccctcctc 3562

                                            
Query: 144  ttcaccggcgtccgccacttcaggcactgagc 175
            |||||||||||| | |||||||||||||||||
Sbjct: 3563 ttcaccggcgtcaggcacttcaggcactgagc 3594

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>dbj|AP003875.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1119_C05
          Length = 126112

 Score =  159 bits (80), Expect = 1e-35
 Identities = 134/152 (88%)
 Strand = Plus / Plus

                                                                         
Query: 24    tggaaggacgccgtggaggaggcatgcgagaacggcatcggtacgatcgcgcagcccggc 83
             ||||| ||||||||||||||||| ||| |||||||||||||   ||||||| ||||  ||
Sbjct: 80699 tggaacgacgccgtggaggaggcgtgccagaacggcatcggcgtgatcgcggagccgagc 80758

                                                                         
Query: 84    ggcagcatcagggacaaggatgccgtcgagtgctgcaacaagtacggtgtctccctcctc 143
             |||||||| ||||||   || |||||||| ||||||||||||||||| ||||||||||||
Sbjct: 80759 ggcagcatgagggacggcgacgccgtcgactgctgcaacaagtacggcgtctccctcctc 80818

                                             
Query: 144   ttcaccggcgtccgccacttcaggcactgagc 175
             |||||||||||| | |||||||||||||||||
Sbjct: 80819 ttcaccggcgtcaggcacttcaggcactgagc 80850

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>gb|AY104212.1| Zea mays PCO098672 mRNA sequence
          Length = 829

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 136/166 (81%), Gaps = 1/166 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcgacgccttcttcccatttgcctggaaggacgccgtggaggaggcatgcgagaacggca 60
           ||||||||||||| || ||||||||||| || || || |||||||| ||| |||||||||
Sbjct: 606 gcgacgccttctttccttttgcctggaatgatgctgtcgaggaggcgtgccagaacggca 665

                                                                       
Query: 61  tcggtacgatcgcgcagcccggcggcagcatcagggacaaggatgccgtcgagtgctgca 120
           |||| |  ||||| ||||| || ||||| |  | |||| |||| ||||| | ||||||||
Sbjct: 666 tcggcatcatcgcccagccaggaggcagtaagaaggacgaggacgccgttgcgtgctgca 725

                                                         
Query: 121 acaagtacggtgtctc-cctcctcttcaccggcgtccgccacttca 165
           ||||||| ||||| || | || || ||||||||||| | |||||||
Sbjct: 726 acaagtatggtgtgtcgcttcgtcctcaccggcgtcaggcacttca 771

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>gb|CP000482.1| Pelobacter propionicus DSM 2379, complete genome
          Length = 4008000

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                               
Query: 142     tcttcaccggcgtccgccacttcaggcactga 173
               ||||||||||| | ||||||||||||||||||
Sbjct: 2812275 tcttcaccggcatgcgccacttcaggcactga 2812244

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>gb|CP000473.1| Solibacter usitatus Ellin6076, complete genome
          Length = 9965640

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 142     tcttcaccggcgtccgccacttc 164
               |||||||||||||||||||||||
Sbjct: 8049999 tcttcaccggcgtccgccacttc 8049977

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>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome
          Length = 1849742

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                 
Query: 142    tcttcaccggcgtccgccacttcaggcactgagcc 176
              ||||||||||||| ||||||||| | |||||||||
Sbjct: 881039 tcttcaccggcgtgcgccacttccgccactgagcc 881073

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>gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome
          Length = 2364842

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                                
Query: 142    tcttcaccggcgtccgccacttcaggcactgagc 175
              ||||||||||| | |||||||||| |||||||||
Sbjct: 509336 tcttcaccggcatgcgccacttcaagcactgagc 509369

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>gb|AE016818.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome V, complete
               sequence
          Length = 1519138

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 110     cgagtgctgcaacaagtacgg 130
               |||||||||||||||||||||
Sbjct: 1125154 cgagtgctgcaacaagtacgg 1125174

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>ref|NM_210476.1| Eremothecium gossypii AER265Wp (AER265W), mRNA
          Length = 1032

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 110 cgagtgctgcaacaagtacgg 130
           |||||||||||||||||||||
Sbjct: 372 cgagtgctgcaacaagtacgg 392

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>gb|CP000477.1| Methanosaeta thermophila PT, complete genome
          Length = 1879471

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 156     cgccacttcaggcactgagc 175
               ||||||||||||||||||||
Sbjct: 1639026 cgccacttcaggcactgagc 1639007

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>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 147     accggcgtccgccacttcaggcactgag 174
               |||||||| || ||||||||||||||||
Sbjct: 1171301 accggcgtgcggcacttcaggcactgag 1171328

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>gb|AC108501.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1354_D07,
              complete sequence
          Length = 156163

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 398    tgtgctagttaaactaagca 417
              ||||||||||||||||||||
Sbjct: 154490 tgtgctagttaaactaagca 154471

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>gb|AC104710.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1286_E05,
             complete sequence
          Length = 106212

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 398   tgtgctagttaaactaagca 417
             ||||||||||||||||||||
Sbjct: 67239 tgtgctagttaaactaagca 67220

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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12
          Length = 27566993

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 398      tgtgctagttaaactaagca 417
                ||||||||||||||||||||
Sbjct: 12904816 tgtgctagttaaactaagca 12904797

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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9
          Length = 22696651

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 398     tgtgctagttaaactaagca 417
               ||||||||||||||||||||
Sbjct: 6308221 tgtgctagttaaactaagca 6308240

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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5
          Length = 29737217

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 398      tgtgctagttaaactaagca 417
                ||||||||||||||||||||
Sbjct: 18514653 tgtgctagttaaactaagca 18514634

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2
          Length = 35954743

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 398      tgtgctagttaaactaagca 417
                ||||||||||||||||||||
Sbjct: 14060398 tgtgctagttaaactaagca 14060379

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>emb|AL365434.13| Human DNA sequence from clone RP11-236B18 on chromosome 10 Contains three
              novel genes and a DEAD/H (Asp-Glu-Ala-Asp/His) box
              polypeptide 18 (Myc-regulated) (DDX18) pseudogene, complete
              sequence
          Length = 158357

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 12     ttcccatttgcctggaagga 31
              ||||||||||||||||||||
Sbjct: 154302 ttcccatttgcctggaagga 154321

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>dbj|AB183847.1| Streptococcus suis purH, purD genes, partial cds, strain:89-590
          Length = 982

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 3   gacgccttcttcccatttgc 22
           ||||||||||||||||||||
Sbjct: 373 gacgccttcttcccatttgc 392

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>dbj|AB183846.1| Streptococcus suis purH, purD genes, partial cds, strain:89-5259
          Length = 983

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 3   gacgccttcttcccatttgc 22
           ||||||||||||||||||||
Sbjct: 373 gacgccttcttcccatttgc 392

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>dbj|AB183833.1| Streptococcus suis purH, purD genes, partial cds, strain:14636
          Length = 982

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 3   gacgccttcttcccatttgc 22
           ||||||||||||||||||||
Sbjct: 373 gacgccttcttcccatttgc 392

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>dbj|AB183832.1| Streptococcus suis purH, sepS6, purD genes, partial and complete
           cds, strain:2524
          Length = 1841

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 3   gacgccttcttcccatttgc 22
           ||||||||||||||||||||
Sbjct: 373 gacgccttcttcccatttgc 392

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>dbj|AB183831.1| Streptococcus suis purH, sepS5, purD genes, partial and complete
           cds, strain:11538
          Length = 1940

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 3   gacgccttcttcccatttgc 22
           ||||||||||||||||||||
Sbjct: 373 gacgccttcttcccatttgc 392

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>dbj|AB183830.1| Streptococcus suis purH, sepS4, purD genes, partial and complete
           cds, strain:6407
          Length = 1940

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 3   gacgccttcttcccatttgc 22
           ||||||||||||||||||||
Sbjct: 373 gacgccttcttcccatttgc 392

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>gb|AC090056.2|AC090056 Oryza sativa chromosome 9 clone PAC0663H05, complete sequence
          Length = 161873

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 398    tgtgctagttaaactaagca 417
              ||||||||||||||||||||
Sbjct: 121431 tgtgctagttaaactaagca 121412

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>dbj|AP006758.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0663H05
          Length = 161938

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 398   tgtgctagttaaactaagca 417
             ||||||||||||||||||||
Sbjct: 40500 tgtgctagttaaactaagca 40519

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>gb|AY193836.1| Vigna unguiculata aminoimidazolecarboximide ribonucleotide
            transformylase/inosine monophosphate cyclohydrolase
            (pur9) mRNA, complete cds
          Length = 1965

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                        
Query: 6    gccttcttcccatttgcctggaaggacgccgtggaggaggcatg 49
            ||||||||||||||||| ||||| || || ||||| || |||||
Sbjct: 1712 gccttcttcccatttgcttggaaagatgctgtggaagaagcatg 1755

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>dbj|AB058944.2| Streptococcus suis purH, ssuMA, ssuMB, ssuRA, ssuRB, purD genes,
           partial and complete cds, strain: 89-2479
          Length = 4486

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 3   gacgccttcttcccatttgc 22
           ||||||||||||||||||||
Sbjct: 373 gacgccttcttcccatttgc 392

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>dbj|AB058943.2| Streptococcus suis purH, ssuMA, ssuMB, ssuRA, ssuRB, purD genes,
           partial and complete cds, strain: 8074
          Length = 4486

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 3   gacgccttcttcccatttgc 22
           ||||||||||||||||||||
Sbjct: 373 gacgccttcttcccatttgc 392

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>dbj|AB058942.2| Streptococcus suis purH, ssuMA, ssuMB, ssuRA, ssuRB, purD genes,
           partial and complete cds, strain: 4961
          Length = 4486

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 3   gacgccttcttcccatttgc 22
           ||||||||||||||||||||
Sbjct: 373 gacgccttcttcccatttgc 392

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>dbj|AB058941.2| Streptococcus suis purH, ssuMA, ssuMB, ssuRA, ssuRB, purD genes,
           partial and complete cds, strain: NIAH11318
          Length = 4487

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 3   gacgccttcttcccatttgc 22
           ||||||||||||||||||||
Sbjct: 374 gacgccttcttcccatttgc 393

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>dbj|AP004136.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1287_H05
          Length = 97812

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 398   tgtgctagttaaactaagca 417
             ||||||||||||||||||||
Sbjct: 41908 tgtgctagttaaactaagca 41889

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>emb|BX322567.4| Zebrafish DNA sequence from clone CH211-240G9 in linkage group 18,
             complete sequence
          Length = 169628

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 386   aaaccagagccatgtgctag 405
             ||||||||||||||||||||
Sbjct: 30095 aaaccagagccatgtgctag 30114

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>emb|AL844879.5|CNS08CB2 Oryza sativa chromosome 12, . BAC OSJNBa0036H15 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 156724

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 398   tgtgctagttaaactaagca 417
             ||||||||||||||||||||
Sbjct: 14411 tgtgctagttaaactaagca 14430

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>dbj|AB045609.1| Streptococcus suis purF, purM, purN, purH, ssuMA, ssuMB, ssuRA,
            ssuRB, purD, purE genes, partial and complete cds
          Length = 9618

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 3    gacgccttcttcccatttgc 22
            ||||||||||||||||||||
Sbjct: 3958 gacgccttcttcccatttgc 3977

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>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome
          Length = 6397126

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 144     ttcaccggcgtccgccacttcaggcact 171
               ||||||||| | ||||||||||||||||
Sbjct: 5512591 ttcaccggcatgcgccacttcaggcact 5512618


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 62,522,747
Number of extensions: 3139876
Number of successful extensions: 221076
Number of sequences better than 10.0: 41
Number of HSP's gapped: 221075
Number of HSP's successfully gapped: 42
Length of query: 446
Length of database: 18,610,659,111
Length adjustment: 22
Effective length of query: 424
Effective length of database: 18,508,616,841
Effective search space: 7847653540584
Effective search space used: 7847653540584
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 13 (26.3 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result