| Clone Name | FLbaf7p01 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BC127575.1| Danio rerio cDNA clone IMAGE:6960754, partial cds Length = 1457 Score = 46.1 bits (23), Expect = 0.28 Identities = 35/39 (89%) Strand = Plus / Plus Query: 184 tgctgctggagaagaaggagtcggagaaggagaggagga 222 |||||||||||||| |||||| |||||||||| ||||| Sbjct: 193 tgctgctggagaaggcggagtccgagaaggagaagagga 231
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8 Length = 28434780 Score = 46.1 bits (23), Expect = 0.28 Identities = 26/27 (96%) Strand = Plus / Minus Query: 131 gaagccggcgaggggcgggaagaggag 157 ||||||||||||||| ||||||||||| Sbjct: 20024208 gaagccggcgaggggagggaagaggag 20024182
>emb|AL137072.8| Human DNA sequence from clone RP11-29B11 on chromosome 9 Contains the 5' end of the TXNDC4 gene for thioredoxin domain containing 4 (endoplasmic reticulum) (ERP44, ERp44,KIAA0573), the 5' end of the INVS gene for inversin, a ribosomal protein S2 (RPS2) pseudogene, a novel pseudogene and two CpG islands, complete sequence Length = 172830 Score = 46.1 bits (23), Expect = 0.28 Identities = 23/23 (100%) Strand = Plus / Minus Query: 40 ctctccatctcatcattttcctt 62 ||||||||||||||||||||||| Sbjct: 87492 ctctccatctcatcattttcctt 87470
>dbj|AP005521.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0477F03 Length = 176120 Score = 46.1 bits (23), Expect = 0.28 Identities = 26/27 (96%) Strand = Plus / Minus Query: 131 gaagccggcgaggggcgggaagaggag 157 ||||||||||||||| ||||||||||| Sbjct: 96059 gaagccggcgaggggagggaagaggag 96033
>gb|AY946510.1| Oryza sativa microRNA MIR435f precursor, gene, partial sequence Length = 267 Score = 46.1 bits (23), Expect = 0.28 Identities = 26/27 (96%) Strand = Plus / Minus Query: 131 gaagccggcgaggggcgggaagaggag 157 ||||||||||||||| ||||||||||| Sbjct: 31 gaagccggcgaggggagggaagaggag 5
>ref|XM_001196593.1| PREDICTED: Strongylocentrotus purpuratus similar to Ankyrin repeat domain-containing protein 26 (LOC756802), partial mRNA Length = 5148 Score = 44.1 bits (22), Expect = 1.1 Identities = 25/26 (96%) Strand = Plus / Plus Query: 205 cggagaaggagaggaggaagcgcatg 230 |||||||||||||||||||| ||||| Sbjct: 893 cggagaaggagaggaggaagggcatg 918
>ref|XM_001202622.1| PREDICTED: Strongylocentrotus purpuratus similar to Ankyrin repeat domain-containing protein 26 (LOC766673), partial mRNA Length = 5148 Score = 44.1 bits (22), Expect = 1.1 Identities = 25/26 (96%) Strand = Plus / Plus Query: 205 cggagaaggagaggaggaagcgcatg 230 |||||||||||||||||||| ||||| Sbjct: 893 cggagaaggagaggaggaagggcatg 918
>emb|CT757481.6| Pig DNA sequence from clone CH242-210D24 on chromosome 7, complete sequence Length = 185790 Score = 44.1 bits (22), Expect = 1.1 Identities = 25/26 (96%) Strand = Plus / Minus Query: 420 agcatcccaacgcccactaccaccac 445 |||||||||||||||||| ||||||| Sbjct: 150057 agcatcccaacgcccactcccaccac 150032
>gb|AC157944.2| Mus musculus BAC clone RP23-456N8 from chromosome 15, complete sequence Length = 179092 Score = 44.1 bits (22), Expect = 1.1 Identities = 31/34 (91%) Strand = Plus / Plus Query: 191 ggagaagaaggagtcggagaaggagaggaggaag 224 ||||||||||||| ||||||| ||||||||||| Sbjct: 78072 ggagaagaaggaggaggagaagaagaggaggaag 78105
>gb|AC124522.4| Mus musculus BAC clone RP23-397A19 from chromosome 10, complete sequence Length = 196485 Score = 44.1 bits (22), Expect = 1.1 Identities = 31/34 (91%) Strand = Plus / Plus Query: 191 ggagaagaaggagtcggagaaggagaggaggaag 224 ||||||||||||| |||||||||||||| |||| Sbjct: 124166 ggagaagaaggagaaggagaaggagaggaagaag 124199
>gb|AC115356.5| Mus musculus BAC clone RP23-47E9 from 15, complete sequence Length = 212177 Score = 44.1 bits (22), Expect = 1.1 Identities = 31/34 (91%) Strand = Plus / Plus Query: 191 ggagaagaaggagtcggagaaggagaggaggaag 224 ||||||||||||| ||||||| ||||||||||| Sbjct: 204550 ggagaagaaggaggaggagaagaagaggaggaag 204583
>gb|AC165428.1| Strongylocentrotus purpuratus BAC clone contig containing Eve, the hox cluster, cholinesterase, and COLP5alpha genes, complete sequence Length = 796348 Score = 44.1 bits (22), Expect = 1.1 Identities = 31/34 (91%) Strand = Plus / Plus Query: 191 ggagaagaaggagtcggagaaggagaggaggaag 224 ||||||||||||| | ||||||||||||||||| Sbjct: 491419 ggagaagaaggaggagaagaaggagaggaggaag 491452
>gb|AC092954.4| Homo sapiens 3 BAC RP11-368I23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 166452 Score = 44.1 bits (22), Expect = 1.1 Identities = 31/34 (91%) Strand = Plus / Plus Query: 191 ggagaagaaggagtcggagaaggagaggaggaag 224 ||||||||||||| |||||||||||| |||||| Sbjct: 141843 ggagaagaaggaggaggagaaggagagtaggaag 141876
>gb|AC100782.2| Homo sapiens, clone RP11-300E4, complete sequence Length = 185123 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Plus Query: 51 atcattttccttgcttgtgaag 72 |||||||||||||||||||||| Sbjct: 64211 atcattttccttgcttgtgaag 64232
>gb|AC113484.14| Mus musculus chromosome 8, clone RP23-343H23, complete sequence Length = 176303 Score = 44.1 bits (22), Expect = 1.1 Identities = 31/34 (91%) Strand = Plus / Plus Query: 191 ggagaagaaggagtcggagaaggagaggaggaag 224 ||||||||||||| |||||||||| |||||||| Sbjct: 102139 ggagaagaaggaggaggagaaggaggggaggaag 102172
>gb|AC010983.9| Homo sapiens BAC clone RP11-484E10 from 2, complete sequence Length = 189870 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Plus Query: 56 tttccttgcttgtgaagtctac 77 |||||||||||||||||||||| Sbjct: 102186 tttccttgcttgtgaagtctac 102207
>emb|AL596088.14| Mouse DNA sequence from clone RP23-157O10 on chromosome 11, complete sequence Length = 233204 Score = 44.1 bits (22), Expect = 1.1 Identities = 25/26 (96%) Strand = Plus / Plus Query: 192 gagaagaaggagtcggagaaggagag 217 ||||||||||||||| |||||||||| Sbjct: 133668 gagaagaaggagtcgaagaaggagag 133693
>ref|NM_001007727.1| Rattus norvegicus Ly6/Plaur domain containing 1 (Lypd1), mRNA gb|BC082032.1| Rattus norvegicus Ly6/Plaur domain containing 1, mRNA (cDNA clone MGC:95169 IMAGE:7130639), complete cds Length = 2038 Score = 44.1 bits (22), Expect = 1.1 Identities = 28/30 (93%) Strand = Plus / Plus Query: 193 agaagaaggagtcggagaaggagaggagga 222 ||||||||| ||||||||||| |||||||| Sbjct: 1536 agaagaaggtgtcggagaaggggaggagga 1565
>ref|NM_001061433.1| Oryza sativa (japonica cultivar-group) Os05g0207200 (Os05g0207200) mRNA, complete cds Length = 1356 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 228 atgaaggcgctctgcgagaag 248 ||||||||||||||||||||| Sbjct: 700 atgaaggcgctctgcgagaag 720
>emb|AM236085.1| Rhizobium leguminosarum bv. viciae plasmid pRL11 complete genome, strain 3841 Length = 684202 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 115 tggagccggtgaaggcgaagc 135 ||||||||||||||||||||| Sbjct: 656143 tggagccggtgaaggcgaagc 656123
>gb|AC189263.1| Brassica rapa subsp. pekinensis clone KBrB021P17, complete sequence Length = 135260 Score = 42.1 bits (21), Expect = 4.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 197 gaaggagtcggagaaggagaggaggaagc 225 ||||||||||| |||||| |||||||||| Sbjct: 124950 gaaggagtcggtgaaggaaaggaggaagc 124978
>ref|NM_123164.1| Arabidopsis thaliana UDP-glycosyltransferase/ transferase, transferring hexosyl groups (AT5G38040) mRNA, complete cds Length = 1350 Score = 42.1 bits (21), Expect = 4.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 1080 ctacttcaacaaagtaaaggaactcgtcg 1108 |||||||||||||||| | |||||||||| Sbjct: 364 ctacttcaacaaagtacatgaactcgtcg 336
>gb|AC122005.3| Mus musculus chromosome 5 clone RP24-340B11, complete sequence Length = 183264 Score = 42.1 bits (21), Expect = 4.4 Identities = 30/32 (93%), Gaps = 2/32 (6%) Strand = Plus / Plus Query: 191 ggagaagaaggagtcggagaaggagaggagga 222 ||||||||||||| ||||||||||||||||| Sbjct: 129721 ggagaagaaggag--ggagaaggagaggagga 129750
>gb|AC135918.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0115F21, complete sequence Length = 128493 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 228 atgaaggcgctctgcgagaag 248 ||||||||||||||||||||| Sbjct: 126129 atgaaggcgctctgcgagaag 126149
>gb|AC104280.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1430_B02, complete sequence Length = 75456 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 228 atgaaggcgctctgcgagaag 248 ||||||||||||||||||||| Sbjct: 749 atgaaggcgctctgcgagaag 769
>gb|AC138386.7| Mus musculus chromosome 1, clone RP24-433D10, complete sequence Length = 142114 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 141 aggggcgggaagaggagcagg 161 ||||||||||||||||||||| Sbjct: 53808 aggggcgggaagaggagcagg 53788
>gb|AC147079.4| Pan troglodytes BAC clone RP43-184E24 from 7, complete sequence Length = 218644 Score = 42.1 bits (21), Expect = 4.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 191 ggagaagaaggagtcggagaaggagagga 219 ||||||||||||| |||||||||||||| Sbjct: 89573 ggagaagaaggagaaggagaaggagagga 89545
>ref|XM_656520.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN4008.2), mRNA Length = 1212 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 26 actggtccttcgtcctctcca 46 ||||||||||||||||||||| Sbjct: 1120 actggtccttcgtcctctcca 1100
>ref|XM_543741.2| PREDICTED: Canis familiaris similar to FYVE, RhoGEF and PH domain containing 4 (LOC486615), mRNA Length = 2917 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 205 cggagaaggagaggaggaagc 225 ||||||||||||||||||||| Sbjct: 798 cggagaaggagaggaggaagc 818
>ref|XM_381997.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG01821.1) partial mRNA Length = 2454 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 145 gcgggaagaggagcagggaga 165 ||||||||||||||||||||| Sbjct: 2373 gcgggaagaggagcagggaga 2393
>gb|AE012504.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 412 of 460 of the complete genome Length = 12849 Score = 42.1 bits (21), Expect = 4.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 115 tggagccggtgaaggcgaagccggc 139 |||||||||||||||||| |||||| Sbjct: 7528 tggagccggtgaaggcgacgccggc 7504
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5 Length = 29737217 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 228 atgaaggcgctctgcgagaag 248 ||||||||||||||||||||| Sbjct: 6562695 atgaaggcgctctgcgagaag 6562715
>emb|AL157832.14| Human DNA sequence from clone RP11-109A6 on chromosome 10 Contains the 3' end of the MGMT gene for O-6-methylguanine-DNA methyltransferase and three novel genes, complete sequence Length = 130192 Score = 42.1 bits (21), Expect = 4.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 145 gcgggaagaggagcagggagagcgg 169 ||||||||||||| ||||||||||| Sbjct: 88183 gcgggaagaggagaagggagagcgg 88159
>gb|AC154351.2| Mus musculus BAC clone RP24-536C5 from chromosome 17, complete sequence Length = 188013 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 432 cccactaccaccactaccacg 452 ||||||||||||||||||||| Sbjct: 26418 cccactaccaccactaccacg 26438
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 42.1 bits (21), Expect = 4.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 115 tggagccggtgaaggcgaagccggc 139 |||||||||||||||||| |||||| Sbjct: 4613210 tggagccggtgaaggcgacgccggc 4613186
>gb|AC146149.2| Pan troglodytes BAC clone RP43-37G13 from chromosome 7, complete sequence Length = 197136 Score = 42.1 bits (21), Expect = 4.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 191 ggagaagaaggagtcggagaaggagagga 219 ||||||||||||| |||||||||||||| Sbjct: 50071 ggagaagaaggagaaggagaaggagagga 50043
>dbj|AB028606.1| Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:F16F17 Length = 61510 Score = 42.1 bits (21), Expect = 4.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 1080 ctacttcaacaaagtaaaggaactcgtcg 1108 |||||||||||||||| | |||||||||| Sbjct: 34547 ctacttcaacaaagtacatgaactcgtcg 34519
>gb|AC145975.3| Gallus gallus BAC clone CH261-4H14 from chromosome unknown, complete sequence Length = 185379 Score = 42.1 bits (21), Expect = 4.4 Identities = 30/33 (90%) Strand = Plus / Plus Query: 193 agaagaaggagtcggagaaggagaggaggaagc 225 ||||||||||| ||||||||||| |||||||| Sbjct: 13214 agaagaaggagaaggagaaggagaagaggaagc 13246
>gb|AC134324.3| Mus musculus BAC clone RP24-532P18 from 9, complete sequence Length = 176054 Score = 42.1 bits (21), Expect = 4.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 196 agaaggagtcggagaaggagaggaggaag 224 |||||||| ||||||||||||||||||| Sbjct: 120103 agaaggagaaggagaaggagaggaggaag 120075
>emb|AJ519278.1|HSA519278 Homo sapiens partial mRNA for IgG2 immunoglobulin heavy chain variable region (IGHV gene), clone ANBPG288 Length = 375 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 436 ctaccaccactaccacgaaaa 456 ||||||||||||||||||||| Sbjct: 200 ctaccaccactaccacgaaaa 180
>emb|AJ519337.1|HSA519337 Homo sapiens partial mRNA for IgM immunoglobulin heavy chain variable region (IGHV gene), clone LIBPM331 Length = 375 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 436 ctaccaccactaccacgaaaa 456 ||||||||||||||||||||| Sbjct: 200 ctaccaccactaccacgaaaa 180 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 194,539,253 Number of extensions: 10834199 Number of successful extensions: 249206 Number of sequences better than 10.0: 41 Number of HSP's gapped: 249206 Number of HSP's successfully gapped: 41 Length of query: 1155 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1132 Effective length of database: 18,503,978,556 Effective search space: 20946503725392 Effective search space used: 20946503725392 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)