| Clone Name | FLbaf2l06 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001061413.1| Oryza sativa (japonica cultivar-group) Os05g0199500 (Os05g0199500) mRNA, complete cds Length = 1770 Score = 718 bits (362), Expect = 0.0 Identities = 677/782 (86%) Strand = Plus / Plus Query: 390 aaggtgctcgctgtcgttggcgtccacactgagctcggatccgccgcccgccgtgctgcg 449 ||||||||||| ||||| || || ||||| ||| ||||||||||||||||||| || ||| Sbjct: 507 aaggtgctcgccgtcgtcggggtgcacacggagatcggatccgccgcccgccgcgccgcg 566 Query: 450 ctccgtgccacctggttcccgccaaaccctgaaggcgtcgtaagtttggaacatggattt 509 ||||| ||||||||||||||||| || || |||||| |||||||||||||||||||| | Sbjct: 567 ctccgggccacctggttcccgcccaagcccgaaggcatcgtaagtttggaacatggaact 626 Query: 510 ggtttatcttttaggtttgtcattggaaggacaaaggacaaagaaaaaatggcagatctt 569 |||||||||||||||||||| ||||| | || || || ||||||||||||||||||||| Sbjct: 627 ggtttatcttttaggtttgttgttggacgaaccaaagataaagaaaaaatggcagatctt 686 Query: 570 cagaaagaggtggacatgtatcatgactttttgtttattgatgctgatgagggtacgaag 629 ||||||||||| |||||||||||||| || |||||| |||||||||| || | ||| ||| Sbjct: 687 cagaaagaggtagacatgtatcatgatttcttgtttgttgatgctgaagaagatacaaag 746 Query: 630 cccccagagaagatgttagcatatttcaaagcagcttatgacatgttccacgcagaattt 689 |||||| |||| |||||||| | ||||||||||||||||||||||||| ||||||| || Sbjct: 747 cccccacagaaaatgttagcgtttttcaaagcagcttatgacatgttcgacgcagatttc 806 Query: 690 tacgtcaaagctgatgatactatctatctgcgcccagatagacttgctgctctccttgca 749 || ||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||| Sbjct: 807 tatgtcaaagctgatgatgctatctatctgcgcccagatagactcgctgctcttcttgca 866 Query: 750 aaggaccgacttcatcaccggacttatattggttgcatgaagaagggaccggttgttagt 809 |||||| | |||||||| ||||| || |||||||||||||| ||||| || ||||| | | Sbjct: 867 aaggacaggcttcatcagcggacatacattggttgcatgaaaaagggtccagttgtcaat 926 Query: 810 gatccgaatatggaatggtatgaaagttcatatggattattaggtaatgagtacttcatg 869 || || |||||| | |||||||||||||| | | ||||||||| ||||||||||||| Sbjct: 927 gacccaaatatgaagtggtatgaaagttcgtgggaattattaggcaatgagtacttcagt 986 Query: 870 catgcgtctggttcactgtatgctctttcttcagaagtggtgggagctatagctactaca 929 ||||| ||||||| ||| |||||||||||||| || ||||| ||| || ||||| ||||| Sbjct: 987 catgcatctggtttactatatgctctttcttcggaggtggttggatctctagctgctaca 1046 Query: 930 tacaatgaaagtttaaggatgtttgattatgaggatgttactgttggctcatggatgctt 989 | ||||| |||||||||||||||||||| || ||||||||| |||| |||||||||||| Sbjct: 1047 aataatgatagtttaaggatgtttgattacgaagatgttactattggatcatggatgctt 1106 Query: 990 gccatgaatgtaaatcatgaagacaattgtgcaatgtgtgattccacatgcactcccaac 1049 |||||||||||||| ||||||||||| |||||||||| ||||| |||||||||||| | Sbjct: 1107 gccatgaatgtaaagcatgaagacaaccgtgcaatgtgcgattcggcatgcactcccacc 1166 Query: 1050 tccattgctgtatgggacagcaaggcatgttcaggctcttgtaaccccattgagaaaata 1109 |||||||||||||||||||||||| ||||||| || |||||| | | ||||| | || Sbjct: 1167 tccattgctgtatgggacagcaagaaatgttcaaattcatgtaacacaactgagatagta 1226 Query: 1110 aaggagctgcacaacacaactttgtgctcaaaaagcccaacattaccgcctgaagtggag 1169 |||| ||| |||||||| || ||||||||||| ||||| ||||| || ||||| |||||| Sbjct: 1227 aaggcgcttcacaacactaccttgtgctcaaagagccctacattgccacctgaggtggag 1286 Query: 1170 ga 1171 || Sbjct: 1287 ga 1288 Score = 81.8 bits (41), Expect = 7e-12 Identities = 53/57 (92%) Strand = Plus / Plus Query: 306 gtcgccttccgctgtggccgcgccgaggactccctacgctccttcctcgcctcctcc 362 |||||||||||||| ||||||||||||||| |||| ||| ||||||||||||||||| Sbjct: 408 gtcgccttccgctgcggccgcgccgaggacaccctccgcgccttcctcgcctcctcc 464 Score = 46.1 bits (23), Expect = 0.39 Identities = 26/27 (96%) Strand = Plus / Plus Query: 116 cgacgacgaggccaagccgcggcgccc 142 ||||||||||||||||||||| ||||| Sbjct: 188 cgacgacgaggccaagccgcgccgccc 214
>dbj|AK063319.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-113-G12, full insert sequence Length = 1621 Score = 718 bits (362), Expect = 0.0 Identities = 677/782 (86%) Strand = Plus / Plus Query: 390 aaggtgctcgctgtcgttggcgtccacactgagctcggatccgccgcccgccgtgctgcg 449 ||||||||||| ||||| || || ||||| ||| ||||||||||||||||||| || ||| Sbjct: 507 aaggtgctcgccgtcgtcggggtgcacacggagatcggatccgccgcccgccgcgccgcg 566 Query: 450 ctccgtgccacctggttcccgccaaaccctgaaggcgtcgtaagtttggaacatggattt 509 ||||| ||||||||||||||||| || || |||||| |||||||||||||||||||| | Sbjct: 567 ctccgggccacctggttcccgcccaagcccgaaggcatcgtaagtttggaacatggaact 626 Query: 510 ggtttatcttttaggtttgtcattggaaggacaaaggacaaagaaaaaatggcagatctt 569 |||||||||||||||||||| ||||| | || || || ||||||||||||||||||||| Sbjct: 627 ggtttatcttttaggtttgttgttggacgaaccaaagataaagaaaaaatggcagatctt 686 Query: 570 cagaaagaggtggacatgtatcatgactttttgtttattgatgctgatgagggtacgaag 629 ||||||||||| |||||||||||||| || |||||| |||||||||| || | ||| ||| Sbjct: 687 cagaaagaggtagacatgtatcatgatttcttgtttgttgatgctgaagaagatacaaag 746 Query: 630 cccccagagaagatgttagcatatttcaaagcagcttatgacatgttccacgcagaattt 689 |||||| |||| |||||||| | ||||||||||||||||||||||||| ||||||| || Sbjct: 747 cccccacagaaaatgttagcgtttttcaaagcagcttatgacatgttcgacgcagatttc 806 Query: 690 tacgtcaaagctgatgatactatctatctgcgcccagatagacttgctgctctccttgca 749 || ||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||| Sbjct: 807 tatgtcaaagctgatgatgctatctatctgcgcccagatagactcgctgctcttcttgca 866 Query: 750 aaggaccgacttcatcaccggacttatattggttgcatgaagaagggaccggttgttagt 809 |||||| | |||||||| ||||| || |||||||||||||| ||||| || ||||| | | Sbjct: 867 aaggacaggcttcatcagcggacatacattggttgcatgaaaaagggtccagttgtcaat 926 Query: 810 gatccgaatatggaatggtatgaaagttcatatggattattaggtaatgagtacttcatg 869 || || |||||| | |||||||||||||| | | ||||||||| ||||||||||||| Sbjct: 927 gacccaaatatgaagtggtatgaaagttcgtgggaattattaggcaatgagtacttcagt 986 Query: 870 catgcgtctggttcactgtatgctctttcttcagaagtggtgggagctatagctactaca 929 ||||| ||||||| ||| |||||||||||||| || ||||| ||| || ||||| ||||| Sbjct: 987 catgcatctggtttactatatgctctttcttcggaggtggttggatctctagctgctaca 1046 Query: 930 tacaatgaaagtttaaggatgtttgattatgaggatgttactgttggctcatggatgctt 989 | ||||| |||||||||||||||||||| || ||||||||| |||| |||||||||||| Sbjct: 1047 aataatgatagtttaaggatgtttgattacgaagatgttactattggatcatggatgctt 1106 Query: 990 gccatgaatgtaaatcatgaagacaattgtgcaatgtgtgattccacatgcactcccaac 1049 |||||||||||||| ||||||||||| |||||||||| ||||| |||||||||||| | Sbjct: 1107 gccatgaatgtaaagcatgaagacaaccgtgcaatgtgcgattcggcatgcactcccacc 1166 Query: 1050 tccattgctgtatgggacagcaaggcatgttcaggctcttgtaaccccattgagaaaata 1109 |||||||||||||||||||||||| ||||||| || |||||| | | ||||| | || Sbjct: 1167 tccattgctgtatgggacagcaagaaatgttcaaattcatgtaacacaactgagatagta 1226 Query: 1110 aaggagctgcacaacacaactttgtgctcaaaaagcccaacattaccgcctgaagtggag 1169 |||| ||| |||||||| || ||||||||||| ||||| ||||| || ||||| |||||| Sbjct: 1227 aaggcgcttcacaacactaccttgtgctcaaagagccctacattgccacctgaggtggag 1286 Query: 1170 ga 1171 || Sbjct: 1287 ga 1288 Score = 81.8 bits (41), Expect = 7e-12 Identities = 53/57 (92%) Strand = Plus / Plus Query: 306 gtcgccttccgctgtggccgcgccgaggactccctacgctccttcctcgcctcctcc 362 |||||||||||||| ||||||||||||||| |||| ||| ||||||||||||||||| Sbjct: 408 gtcgccttccgctgcggccgcgccgaggacaccctccgcgccttcctcgcctcctcc 464 Score = 46.1 bits (23), Expect = 0.39 Identities = 26/27 (96%) Strand = Plus / Plus Query: 116 cgacgacgaggccaagccgcggcgccc 142 ||||||||||||||||||||| ||||| Sbjct: 188 cgacgacgaggccaagccgcgccgccc 214
>dbj|AK063280.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-113-C10, full insert sequence Length = 1770 Score = 718 bits (362), Expect = 0.0 Identities = 677/782 (86%) Strand = Plus / Plus Query: 390 aaggtgctcgctgtcgttggcgtccacactgagctcggatccgccgcccgccgtgctgcg 449 ||||||||||| ||||| || || ||||| ||| ||||||||||||||||||| || ||| Sbjct: 507 aaggtgctcgccgtcgtcggggtgcacacggagatcggatccgccgcccgccgcgccgcg 566 Query: 450 ctccgtgccacctggttcccgccaaaccctgaaggcgtcgtaagtttggaacatggattt 509 ||||| ||||||||||||||||| || || |||||| |||||||||||||||||||| | Sbjct: 567 ctccgggccacctggttcccgcccaagcccgaaggcatcgtaagtttggaacatggaact 626 Query: 510 ggtttatcttttaggtttgtcattggaaggacaaaggacaaagaaaaaatggcagatctt 569 |||||||||||||||||||| ||||| | || || || ||||||||||||||||||||| Sbjct: 627 ggtttatcttttaggtttgttgttggacgaaccaaagataaagaaaaaatggcagatctt 686 Query: 570 cagaaagaggtggacatgtatcatgactttttgtttattgatgctgatgagggtacgaag 629 ||||||||||| |||||||||||||| || |||||| |||||||||| || | ||| ||| Sbjct: 687 cagaaagaggtagacatgtatcatgatttcttgtttgttgatgctgaagaagatacaaag 746 Query: 630 cccccagagaagatgttagcatatttcaaagcagcttatgacatgttccacgcagaattt 689 |||||| |||| |||||||| | ||||||||||||||||||||||||| ||||||| || Sbjct: 747 cccccacagaaaatgttagcgtttttcaaagcagcttatgacatgttcgacgcagatttc 806 Query: 690 tacgtcaaagctgatgatactatctatctgcgcccagatagacttgctgctctccttgca 749 || ||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||| Sbjct: 807 tatgtcaaagctgatgatgctatctatctgcgcccagatagactcgctgctcttcttgca 866 Query: 750 aaggaccgacttcatcaccggacttatattggttgcatgaagaagggaccggttgttagt 809 |||||| | |||||||| ||||| || |||||||||||||| ||||| || ||||| | | Sbjct: 867 aaggacaggcttcatcagcggacatacattggttgcatgaaaaagggtccagttgtcaat 926 Query: 810 gatccgaatatggaatggtatgaaagttcatatggattattaggtaatgagtacttcatg 869 || || |||||| | |||||||||||||| | | ||||||||| ||||||||||||| Sbjct: 927 gacccaaatatgaagtggtatgaaagttcgtgggaattattaggcaatgagtacttcagt 986 Query: 870 catgcgtctggttcactgtatgctctttcttcagaagtggtgggagctatagctactaca 929 ||||| ||||||| ||| |||||||||||||| || ||||| ||| || ||||| ||||| Sbjct: 987 catgcatctggtttactatatgctctttcttcggaggtggttggatctctagctgctaca 1046 Query: 930 tacaatgaaagtttaaggatgtttgattatgaggatgttactgttggctcatggatgctt 989 | ||||| |||||||||||||||||||| || ||||||||| |||| |||||||||||| Sbjct: 1047 aataatgatagtttaaggatgtttgattacgaagatgttactattggatcatggatgctt 1106 Query: 990 gccatgaatgtaaatcatgaagacaattgtgcaatgtgtgattccacatgcactcccaac 1049 |||||||||||||| ||||||||||| |||||||||| ||||| |||||||||||| | Sbjct: 1107 gccatgaatgtaaagcatgaagacaaccgtgcaatgtgcgattcggcatgcactcccacc 1166 Query: 1050 tccattgctgtatgggacagcaaggcatgttcaggctcttgtaaccccattgagaaaata 1109 |||||||||||||||||||||||| ||||||| || |||||| | | ||||| | || Sbjct: 1167 tccattgctgtatgggacagcaagaaatgttcaaattcatgtaacacaactgagatagta 1226 Query: 1110 aaggagctgcacaacacaactttgtgctcaaaaagcccaacattaccgcctgaagtggag 1169 |||| ||| |||||||| || ||||||||||| ||||| ||||| || ||||| |||||| Sbjct: 1227 aaggcgcttcacaacactaccttgtgctcaaagagccctacattgccacctgaggtggag 1286 Query: 1170 ga 1171 || Sbjct: 1287 ga 1288 Score = 81.8 bits (41), Expect = 7e-12 Identities = 53/57 (92%) Strand = Plus / Plus Query: 306 gtcgccttccgctgtggccgcgccgaggactccctacgctccttcctcgcctcctcc 362 |||||||||||||| ||||||||||||||| |||| ||| ||||||||||||||||| Sbjct: 408 gtcgccttccgctgcggccgcgccgaggacaccctccgcgccttcctcgcctcctcc 464 Score = 46.1 bits (23), Expect = 0.39 Identities = 26/27 (96%) Strand = Plus / Plus Query: 116 cgacgacgaggccaagccgcggcgccc 142 ||||||||||||||||||||| ||||| Sbjct: 188 cgacgacgaggccaagccgcgccgccc 214
>gb|AC136520.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0017O06, complete sequence Length = 151656 Score = 182 bits (92), Expect = 3e-42 Identities = 131/144 (90%) Strand = Plus / Minus Query: 939 agtttaaggatgtttgattatgaggatgttactgttggctcatggatgcttgccatgaat 998 |||||||||||||||||||| || ||||||||| |||| ||||||||||||||||||||| Sbjct: 58267 agtttaaggatgtttgattacgaagatgttactattggatcatggatgcttgccatgaat 58208 Query: 999 gtaaatcatgaagacaattgtgcaatgtgtgattccacatgcactcccaactccattgct 1058 ||||| ||||||||||| |||||||||| ||||| |||||||||||| |||||||||| Sbjct: 58207 gtaaagcatgaagacaaccgtgcaatgtgcgattcggcatgcactcccacctccattgct 58148 Query: 1059 gtatgggacagcaaggcatgttca 1082 ||||||||||||||| ||||||| Sbjct: 58147 gtatgggacagcaagaaatgttca 58124 Score = 155 bits (78), Expect = 6e-34 Identities = 135/154 (87%) Strand = Plus / Minus Query: 492 agtttggaacatggatttggtttatcttttaggtttgtcattggaaggacaaaggacaaa 551 ||||||||||||||| ||||||||||||||||||||| ||||| | || || || ||| Sbjct: 59658 agtttggaacatggaactggtttatcttttaggtttgttgttggacgaaccaaagataaa 59599 Query: 552 gaaaaaatggcagatcttcagaaagaggtggacatgtatcatgactttttgtttattgat 611 ||||||||||||||||||||||||||||| |||||||||||||| || |||||| ||||| Sbjct: 59598 gaaaaaatggcagatcttcagaaagaggtagacatgtatcatgatttcttgtttgttgat 59539 Query: 612 gctgatgagggtacgaagcccccagagaagatgt 645 ||||| || | ||| ||||||||| |||| |||| Sbjct: 59538 gctgaagaagatacaaagcccccacagaaaatgt 59505 Score = 109 bits (55), Expect = 3e-20 Identities = 76/83 (91%) Strand = Plus / Minus Query: 644 gttagcatatttcaaagcagcttatgacatgttccacgcagaattttacgtcaaagctga 703 |||||| | ||||||||||||||||||||||||| ||||||| || || ||||||||||| Sbjct: 59419 gttagcgtttttcaaagcagcttatgacatgttcgacgcagatttctatgtcaaagctga 59360 Query: 704 tgatactatctatctgcgcccag 726 |||| |||||||||||||||||| Sbjct: 59359 tgatgctatctatctgcgcccag 59337 Score = 103 bits (52), Expect = 2e-18 Identities = 91/104 (87%) Strand = Plus / Minus Query: 390 aaggtgctcgctgtcgttggcgtccacactgagctcggatccgccgcccgccgtgctgcg 449 ||||||||||| ||||| || || ||||| ||| ||||||||||||||||||| || ||| Sbjct: 61241 aaggtgctcgccgtcgtcggggtgcacacggagatcggatccgccgcccgccgcgccgcg 61182 Query: 450 ctccgtgccacctggttcccgccaaaccctgaaggcgtcgtaag 493 ||||| ||||||||||||||||| || || |||||| ||||||| Sbjct: 61181 ctccgggccacctggttcccgcccaagcccgaaggcatcgtaag 61138 Score = 85.7 bits (43), Expect = 5e-13 Identities = 73/83 (87%) Strand = Plus / Minus Query: 723 ccagatagacttgctgctctccttgcaaaggaccgacttcatcaccggacttatattggt 782 ||||||||||| |||||||| |||||||||||| | |||||||| ||||| || |||||| Sbjct: 59258 ccagatagactcgctgctcttcttgcaaaggacaggcttcatcagcggacatacattggt 59199 Query: 783 tgcatgaagaagggaccggttgt 805 |||||||| ||||| || ||||| Sbjct: 59198 tgcatgaaaaagggtccagttgt 59176 Score = 81.8 bits (41), Expect = 7e-12 Identities = 53/57 (92%) Strand = Plus / Minus Query: 306 gtcgccttccgctgtggccgcgccgaggactccctacgctccttcctcgcctcctcc 362 |||||||||||||| ||||||||||||||| |||| ||| ||||||||||||||||| Sbjct: 61340 gtcgccttccgctgcggccgcgccgaggacaccctccgcgccttcctcgcctcctcc 61284 Score = 79.8 bits (40), Expect = 3e-11 Identities = 88/104 (84%) Strand = Plus / Minus Query: 826 ggtatgaaagttcatatggattattaggtaatgagtacttcatgcatgcgtctggttcac 885 ||||||||||||| | | ||||||||| ||||||||||||| ||||| ||||||| || Sbjct: 58694 ggtatgaaagttcgtgggaattattaggcaatgagtacttcagtcatgcatctggtttac 58635 Query: 886 tgtatgctctttcttcagaagtggtgggagctatagctactaca 929 | |||||||||||||| || ||||| ||| || ||||| ||||| Sbjct: 58634 tatatgctctttcttcggaggtggttggatctctagctgctaca 58591 Score = 56.0 bits (28), Expect = 4e-04 Identities = 55/64 (85%) Strand = Plus / Minus Query: 1108 taaaggagctgcacaacacaactttgtgctcaaaaagcccaacattaccgcctgaagtgg 1167 |||||| ||| |||||||| || ||||||||||| ||||| ||||| || ||||| |||| Sbjct: 57436 taaaggcgcttcacaacactaccttgtgctcaaagagccctacattgccacctgaggtgg 57377 Query: 1168 agga 1171 |||| Sbjct: 57376 agga 57373 Score = 46.1 bits (23), Expect = 0.39 Identities = 26/27 (96%) Strand = Plus / Minus Query: 116 cgacgacgaggccaagccgcggcgccc 142 ||||||||||||||||||||| ||||| Sbjct: 61560 cgacgacgaggccaagccgcgccgccc 61534
>gb|AC136519.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0007C23, complete sequence Length = 173764 Score = 182 bits (92), Expect = 3e-42 Identities = 131/144 (90%) Strand = Plus / Minus Query: 939 agtttaaggatgtttgattatgaggatgttactgttggctcatggatgcttgccatgaat 998 |||||||||||||||||||| || ||||||||| |||| ||||||||||||||||||||| Sbjct: 158251 agtttaaggatgtttgattacgaagatgttactattggatcatggatgcttgccatgaat 158192 Query: 999 gtaaatcatgaagacaattgtgcaatgtgtgattccacatgcactcccaactccattgct 1058 ||||| ||||||||||| |||||||||| ||||| |||||||||||| |||||||||| Sbjct: 158191 gtaaagcatgaagacaaccgtgcaatgtgcgattcggcatgcactcccacctccattgct 158132 Query: 1059 gtatgggacagcaaggcatgttca 1082 ||||||||||||||| ||||||| Sbjct: 158131 gtatgggacagcaagaaatgttca 158108 Score = 155 bits (78), Expect = 6e-34 Identities = 135/154 (87%) Strand = Plus / Minus Query: 492 agtttggaacatggatttggtttatcttttaggtttgtcattggaaggacaaaggacaaa 551 ||||||||||||||| ||||||||||||||||||||| ||||| | || || || ||| Sbjct: 159642 agtttggaacatggaactggtttatcttttaggtttgttgttggacgaaccaaagataaa 159583 Query: 552 gaaaaaatggcagatcttcagaaagaggtggacatgtatcatgactttttgtttattgat 611 ||||||||||||||||||||||||||||| |||||||||||||| || |||||| ||||| Sbjct: 159582 gaaaaaatggcagatcttcagaaagaggtagacatgtatcatgatttcttgtttgttgat 159523 Query: 612 gctgatgagggtacgaagcccccagagaagatgt 645 ||||| || | ||| ||||||||| |||| |||| Sbjct: 159522 gctgaagaagatacaaagcccccacagaaaatgt 159489 Score = 109 bits (55), Expect = 3e-20 Identities = 76/83 (91%) Strand = Plus / Minus Query: 644 gttagcatatttcaaagcagcttatgacatgttccacgcagaattttacgtcaaagctga 703 |||||| | ||||||||||||||||||||||||| ||||||| || || ||||||||||| Sbjct: 159403 gttagcgtttttcaaagcagcttatgacatgttcgacgcagatttctatgtcaaagctga 159344 Query: 704 tgatactatctatctgcgcccag 726 |||| |||||||||||||||||| Sbjct: 159343 tgatgctatctatctgcgcccag 159321 Score = 103 bits (52), Expect = 2e-18 Identities = 91/104 (87%) Strand = Plus / Minus Query: 390 aaggtgctcgctgtcgttggcgtccacactgagctcggatccgccgcccgccgtgctgcg 449 ||||||||||| ||||| || || ||||| ||| ||||||||||||||||||| || ||| Sbjct: 161225 aaggtgctcgccgtcgtcggggtgcacacggagatcggatccgccgcccgccgcgccgcg 161166 Query: 450 ctccgtgccacctggttcccgccaaaccctgaaggcgtcgtaag 493 ||||| ||||||||||||||||| || || |||||| ||||||| Sbjct: 161165 ctccgggccacctggttcccgcccaagcccgaaggcatcgtaag 161122 Score = 85.7 bits (43), Expect = 5e-13 Identities = 73/83 (87%) Strand = Plus / Minus Query: 723 ccagatagacttgctgctctccttgcaaaggaccgacttcatcaccggacttatattggt 782 ||||||||||| |||||||| |||||||||||| | |||||||| ||||| || |||||| Sbjct: 159242 ccagatagactcgctgctcttcttgcaaaggacaggcttcatcagcggacatacattggt 159183 Query: 783 tgcatgaagaagggaccggttgt 805 |||||||| ||||| || ||||| Sbjct: 159182 tgcatgaaaaagggtccagttgt 159160 Score = 81.8 bits (41), Expect = 7e-12 Identities = 53/57 (92%) Strand = Plus / Minus Query: 306 gtcgccttccgctgtggccgcgccgaggactccctacgctccttcctcgcctcctcc 362 |||||||||||||| ||||||||||||||| |||| ||| ||||||||||||||||| Sbjct: 161324 gtcgccttccgctgcggccgcgccgaggacaccctccgcgccttcctcgcctcctcc 161268 Score = 79.8 bits (40), Expect = 3e-11 Identities = 88/104 (84%) Strand = Plus / Minus Query: 826 ggtatgaaagttcatatggattattaggtaatgagtacttcatgcatgcgtctggttcac 885 ||||||||||||| | | ||||||||| ||||||||||||| ||||| ||||||| || Sbjct: 158678 ggtatgaaagttcgtgggaattattaggcaatgagtacttcagtcatgcatctggtttac 158619 Query: 886 tgtatgctctttcttcagaagtggtgggagctatagctactaca 929 | |||||||||||||| || ||||| ||| || ||||| ||||| Sbjct: 158618 tatatgctctttcttcggaggtggttggatctctagctgctaca 158575 Score = 56.0 bits (28), Expect = 4e-04 Identities = 55/64 (85%) Strand = Plus / Minus Query: 1108 taaaggagctgcacaacacaactttgtgctcaaaaagcccaacattaccgcctgaagtgg 1167 |||||| ||| |||||||| || ||||||||||| ||||| ||||| || ||||| |||| Sbjct: 157420 taaaggcgcttcacaacactaccttgtgctcaaagagccctacattgccacctgaggtgg 157361 Query: 1168 agga 1171 |||| Sbjct: 157360 agga 157357 Score = 46.1 bits (23), Expect = 0.39 Identities = 26/27 (96%) Strand = Plus / Minus Query: 116 cgacgacgaggccaagccgcggcgccc 142 ||||||||||||||||||||| ||||| Sbjct: 161544 cgacgacgaggccaagccgcgccgccc 161518
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5 Length = 29737217 Score = 182 bits (92), Expect = 3e-42 Identities = 131/144 (90%) Strand = Plus / Minus Query: 939 agtttaaggatgtttgattatgaggatgttactgttggctcatggatgcttgccatgaat 998 |||||||||||||||||||| || ||||||||| |||| ||||||||||||||||||||| Sbjct: 6110698 agtttaaggatgtttgattacgaagatgttactattggatcatggatgcttgccatgaat 6110639 Query: 999 gtaaatcatgaagacaattgtgcaatgtgtgattccacatgcactcccaactccattgct 1058 ||||| ||||||||||| |||||||||| ||||| |||||||||||| |||||||||| Sbjct: 6110638 gtaaagcatgaagacaaccgtgcaatgtgcgattcggcatgcactcccacctccattgct 6110579 Query: 1059 gtatgggacagcaaggcatgttca 1082 ||||||||||||||| ||||||| Sbjct: 6110578 gtatgggacagcaagaaatgttca 6110555 Score = 155 bits (78), Expect = 6e-34 Identities = 135/154 (87%) Strand = Plus / Minus Query: 492 agtttggaacatggatttggtttatcttttaggtttgtcattggaaggacaaaggacaaa 551 ||||||||||||||| ||||||||||||||||||||| ||||| | || || || ||| Sbjct: 6112089 agtttggaacatggaactggtttatcttttaggtttgttgttggacgaaccaaagataaa 6112030 Query: 552 gaaaaaatggcagatcttcagaaagaggtggacatgtatcatgactttttgtttattgat 611 ||||||||||||||||||||||||||||| |||||||||||||| || |||||| ||||| Sbjct: 6112029 gaaaaaatggcagatcttcagaaagaggtagacatgtatcatgatttcttgtttgttgat 6111970 Query: 612 gctgatgagggtacgaagcccccagagaagatgt 645 ||||| || | ||| ||||||||| |||| |||| Sbjct: 6111969 gctgaagaagatacaaagcccccacagaaaatgt 6111936 Score = 109 bits (55), Expect = 3e-20 Identities = 76/83 (91%) Strand = Plus / Minus Query: 644 gttagcatatttcaaagcagcttatgacatgttccacgcagaattttacgtcaaagctga 703 |||||| | ||||||||||||||||||||||||| ||||||| || || ||||||||||| Sbjct: 6111850 gttagcgtttttcaaagcagcttatgacatgttcgacgcagatttctatgtcaaagctga 6111791 Query: 704 tgatactatctatctgcgcccag 726 |||| |||||||||||||||||| Sbjct: 6111790 tgatgctatctatctgcgcccag 6111768 Score = 103 bits (52), Expect = 2e-18 Identities = 91/104 (87%) Strand = Plus / Minus Query: 390 aaggtgctcgctgtcgttggcgtccacactgagctcggatccgccgcccgccgtgctgcg 449 ||||||||||| ||||| || || ||||| ||| ||||||||||||||||||| || ||| Sbjct: 6113672 aaggtgctcgccgtcgtcggggtgcacacggagatcggatccgccgcccgccgcgccgcg 6113613 Query: 450 ctccgtgccacctggttcccgccaaaccctgaaggcgtcgtaag 493 ||||| ||||||||||||||||| || || |||||| ||||||| Sbjct: 6113612 ctccgggccacctggttcccgcccaagcccgaaggcatcgtaag 6113569 Score = 85.7 bits (43), Expect = 5e-13 Identities = 73/83 (87%) Strand = Plus / Minus Query: 723 ccagatagacttgctgctctccttgcaaaggaccgacttcatcaccggacttatattggt 782 ||||||||||| |||||||| |||||||||||| | |||||||| ||||| || |||||| Sbjct: 6111689 ccagatagactcgctgctcttcttgcaaaggacaggcttcatcagcggacatacattggt 6111630 Query: 783 tgcatgaagaagggaccggttgt 805 |||||||| ||||| || ||||| Sbjct: 6111629 tgcatgaaaaagggtccagttgt 6111607 Score = 81.8 bits (41), Expect = 7e-12 Identities = 53/57 (92%) Strand = Plus / Minus Query: 306 gtcgccttccgctgtggccgcgccgaggactccctacgctccttcctcgcctcctcc 362 |||||||||||||| ||||||||||||||| |||| ||| ||||||||||||||||| Sbjct: 6113771 gtcgccttccgctgcggccgcgccgaggacaccctccgcgccttcctcgcctcctcc 6113715 Score = 79.8 bits (40), Expect = 3e-11 Identities = 88/104 (84%) Strand = Plus / Minus Query: 826 ggtatgaaagttcatatggattattaggtaatgagtacttcatgcatgcgtctggttcac 885 ||||||||||||| | | ||||||||| ||||||||||||| ||||| ||||||| || Sbjct: 6111125 ggtatgaaagttcgtgggaattattaggcaatgagtacttcagtcatgcatctggtttac 6111066 Query: 886 tgtatgctctttcttcagaagtggtgggagctatagctactaca 929 | |||||||||||||| || ||||| ||| || ||||| ||||| Sbjct: 6111065 tatatgctctttcttcggaggtggttggatctctagctgctaca 6111022 Score = 56.0 bits (28), Expect = 4e-04 Identities = 55/64 (85%) Strand = Plus / Minus Query: 1108 taaaggagctgcacaacacaactttgtgctcaaaaagcccaacattaccgcctgaagtgg 1167 |||||| ||| |||||||| || ||||||||||| ||||| ||||| || ||||| |||| Sbjct: 6109867 taaaggcgcttcacaacactaccttgtgctcaaagagccctacattgccacctgaggtgg 6109808 Query: 1168 agga 1171 |||| Sbjct: 6109807 agga 6109804 Score = 46.1 bits (23), Expect = 0.39 Identities = 26/27 (96%) Strand = Plus / Minus Query: 116 cgacgacgaggccaagccgcggcgccc 142 ||||||||||||||||||||| ||||| Sbjct: 6113991 cgacgacgaggccaagccgcgccgccc 6113965
>emb|CT984352.1| partial cDNA sequence from a Lambda ZAP II normalized full-length cDNA library of differentiating xylem from Eucalyptus gunnii Length = 860 Score = 60.0 bits (30), Expect = 3e-05 Identities = 51/58 (87%) Strand = Plus / Plus Query: 958 atgaggatgttactgttggctcatggatgcttgccatgaatgtaaatcatgaagacaa 1015 |||||||||||||| |||| |||||||||||||| ||||| | | ||||||| ||||| Sbjct: 301 atgaggatgttactattggttcatggatgcttgctatgaacgcatatcatgaggacaa 358
>ref|NM_001063392.1| Oryza sativa (japonica cultivar-group) Os06g0156900 (Os06g0156900) mRNA, complete cds Length = 1543 Score = 48.1 bits (24), Expect = 0.099 Identities = 36/40 (90%) Strand = Plus / Plus Query: 958 atgaggatgttactgttggctcatggatgcttgccatgaa 997 |||||||||||||| |||| || ||||||||||| ||||| Sbjct: 948 atgaggatgttactattggatcctggatgcttgctatgaa 987
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6 Length = 30731886 Score = 48.1 bits (24), Expect = 0.099 Identities = 36/40 (90%) Strand = Plus / Plus Query: 958 atgaggatgttactgttggctcatggatgcttgccatgaa 997 |||||||||||||| |||| || ||||||||||| ||||| Sbjct: 2905309 atgaggatgttactattggatcctggatgcttgctatgaa 2905348
>emb|AJ506741.1|OSA506741 Oryza sativa mRNA for beta 1,3-glycosyltransferase-like protein III (b3gt3 gene) Length = 756 Score = 48.1 bits (24), Expect = 0.099 Identities = 36/40 (90%) Strand = Plus / Plus Query: 958 atgaggatgttactgttggctcatggatgcttgccatgaa 997 |||||||||||||| |||| || ||||||||||| ||||| Sbjct: 536 atgaggatgttactattggatcctggatgcttgctatgaa 575
>dbj|AP007223.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0046E09 Length = 146776 Score = 48.1 bits (24), Expect = 0.099 Identities = 36/40 (90%) Strand = Plus / Plus Query: 958 atgaggatgttactgttggctcatggatgcttgccatgaa 997 |||||||||||||| |||| || ||||||||||| ||||| Sbjct: 65455 atgaggatgttactattggatcctggatgcttgctatgaa 65494
>dbj|AP006654.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT31E21, TM0340, complete sequence Length = 120480 Score = 48.1 bits (24), Expect = 0.099 Identities = 45/52 (86%) Strand = Plus / Plus Query: 958 atgaggatgttactgttggctcatggatgcttgccatgaatgtaaatcatga 1009 |||||||||||||| |||| | ||||||||||| |||||||| || ||||| Sbjct: 70817 atgaggatgttactattggtgcttggatgcttgcaatgaatgtcaaccatga 70868
>dbj|AK110688.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-170-A01, full insert sequence Length = 1543 Score = 48.1 bits (24), Expect = 0.099 Identities = 36/40 (90%) Strand = Plus / Plus Query: 958 atgaggatgttactgttggctcatggatgcttgccatgaa 997 |||||||||||||| |||| || ||||||||||| ||||| Sbjct: 948 atgaggatgttactattggatcctggatgcttgctatgaa 987
>gb|AC120418.10| Mus musculus chromosome 6, clone RP24-474I24, complete sequence Length = 177307 Score = 46.1 bits (23), Expect = 0.39 Identities = 23/23 (100%) Strand = Plus / Plus Query: 1442 ttagtataactttgaatattgat 1464 ||||||||||||||||||||||| Sbjct: 52949 ttagtataactttgaatattgat 52971
>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome Length = 7215267 Score = 46.1 bits (23), Expect = 0.39 Identities = 23/23 (100%) Strand = Plus / Plus Query: 368 ccactccgccggcgacagagaaa 390 ||||||||||||||||||||||| Sbjct: 3713665 ccactccgccggcgacagagaaa 3713687
>gb|AC153617.3| Mus musculus 6 BAC RP23-177G20 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 199525 Score = 46.1 bits (23), Expect = 0.39 Identities = 23/23 (100%) Strand = Plus / Minus Query: 1442 ttagtataactttgaatattgat 1464 ||||||||||||||||||||||| Sbjct: 22132 ttagtataactttgaatattgat 22110
>ref|XM_001003036.1| PREDICTED: Mus musculus mucin 19 (Muc19), mRNA Length = 10223 Score = 44.1 bits (22), Expect = 1.5 Identities = 22/22 (100%) Strand = Plus / Plus Query: 70 agcaccgccaccaccacgacga 91 |||||||||||||||||||||| Sbjct: 8630 agcaccgccaccaccacgacga 8651
>ref|XM_992108.1| PREDICTED: Mus musculus similar to mucin 19 (LOC667734), mRNA Length = 8317 Score = 44.1 bits (22), Expect = 1.5 Identities = 22/22 (100%) Strand = Plus / Plus Query: 70 agcaccgccaccaccacgacga 91 |||||||||||||||||||||| Sbjct: 6448 agcaccgccaccaccacgacga 6469
>ref|XM_557990.1| Anopheles gambiae str. PEST ENSANGP00000027882 (ENSANGG00000022889), partial mRNA Length = 1344 Score = 44.1 bits (22), Expect = 1.5 Identities = 22/22 (100%) Strand = Plus / Plus Query: 70 agcaccgccaccaccacgacga 91 |||||||||||||||||||||| Sbjct: 277 agcaccgccaccaccacgacga 298
>ref|XM_319568.2| Anopheles gambiae str. PEST ENSANGP00000006371 (ENSANGG00000004832), partial mRNA Length = 1347 Score = 44.1 bits (22), Expect = 1.5 Identities = 22/22 (100%) Strand = Plus / Plus Query: 70 agcaccgccaccaccacgacga 91 |||||||||||||||||||||| Sbjct: 172 agcaccgccaccaccacgacga 193
>gb|AC101660.25| Mus musculus chromosome 15, clone RP23-4I22, complete sequence Length = 188464 Score = 44.1 bits (22), Expect = 1.5 Identities = 22/22 (100%) Strand = Plus / Minus Query: 70 agcaccgccaccaccacgacga 91 |||||||||||||||||||||| Sbjct: 42157 agcaccgccaccaccacgacga 42136
>gb|AC191229.3| Pan troglodytes BAC clone CH251-612E18 from chromosome x, complete sequence Length = 220751 Score = 42.1 bits (21), Expect = 6.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1098 attgagaaaataaaggagctg 1118 ||||||||||||||||||||| Sbjct: 123075 attgagaaaataaaggagctg 123055
>gb|CP000384.1| Mycobacterium sp. MCS, complete genome Length = 5705448 Score = 42.1 bits (21), Expect = 6.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 109 accgctccgacgacgaggcca 129 ||||||||||||||||||||| Sbjct: 5334781 accgctccgacgacgaggcca 5334761
>emb|CR382385.32| Zebrafish DNA sequence from clone CH211-235I11 in linkage group 17, complete sequence Length = 169463 Score = 42.1 bits (21), Expect = 6.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 540 acaaaggacaaagaaaaaatg 560 ||||||||||||||||||||| Sbjct: 106378 acaaaggacaaagaaaaaatg 106398
>gb|AC147536.12| Medicago truncatula clone mth2-9l3, complete sequence Length = 111486 Score = 42.1 bits (21), Expect = 6.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 657 aaagcagcttatgacatgttc 677 ||||||||||||||||||||| Sbjct: 86725 aaagcagcttatgacatgttc 86705
>ref|XM_365663.1| Magnaporthe grisea 70-15 hypothetical protein (MG02365.4) partial mRNA Length = 1536 Score = 42.1 bits (21), Expect = 6.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 72 caccgccaccaccacgacgaagacg 96 |||||||||||||||||||| |||| Sbjct: 1210 caccgccaccaccacgacgacgacg 1234
>gb|AC146751.10| Medicago truncatula clone mth2-60a22, complete sequence Length = 119297 Score = 42.1 bits (21), Expect = 6.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 657 aaagcagcttatgacatgttc 677 ||||||||||||||||||||| Sbjct: 53082 aaagcagcttatgacatgttc 53102
>gb|AC004926.2| Homo sapiens PAC clone RP5-910H9 from 7, complete sequence Length = 153556 Score = 42.1 bits (21), Expect = 6.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1264 ttatattgttgtatgtatcac 1284 ||||||||||||||||||||| Sbjct: 15175 ttatattgttgtatgtatcac 15195
>dbj|AP007171.1| Aspergillus oryzae RIB40 genomic DNA, SC011 Length = 2505489 Score = 42.1 bits (21), Expect = 6.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 528 gtcattggaaggacaaaggacaaag 552 |||||||||||| |||||||||||| Sbjct: 1140340 gtcattggaagggcaaaggacaaag 1140364
>emb|X65649.1|CSRNPB Calothrix sp. rnpB gene for RNase P RNA subunit Length = 664 Score = 42.1 bits (21), Expect = 6.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 536 aaggacaaaggacaaagaaaaaatg 560 ||||||||||||||||||| ||||| Sbjct: 303 aaggacaaaggacaaagaacaaatg 327
>gb|AC005926.1| Homo sapiens Xp22-171-173 BAC GSHB-312I4 (Genome Systems Human BAC Library) complete sequence Length = 95391 Score = 42.1 bits (21), Expect = 6.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1098 attgagaaaataaaggagctg 1118 ||||||||||||||||||||| Sbjct: 53432 attgagaaaataaaggagctg 53412
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 42.1 bits (21), Expect = 6.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 116 cgacgacgaggccaagccgcg 136 ||||||||||||||||||||| Sbjct: 20909441 cgacgacgaggccaagccgcg 20909461
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 42.1 bits (21), Expect = 6.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 502 atggatttggtttatctttta 522 ||||||||||||||||||||| Sbjct: 6849584 atggatttggtttatctttta 6849564
>dbj|AP002835.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0417G05 Length = 147803 Score = 42.1 bits (21), Expect = 6.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 502 atggatttggtttatctttta 522 ||||||||||||||||||||| Sbjct: 131645 atggatttggtttatctttta 131625
>dbj|AP002902.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0492F05 Length = 159242 Score = 42.1 bits (21), Expect = 6.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 502 atggatttggtttatctttta 522 ||||||||||||||||||||| Sbjct: 17308 atggatttggtttatctttta 17288
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 42.1 bits (21), Expect = 6.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 115 ccgacgacgaggccaagccgc 135 ||||||||||||||||||||| Sbjct: 4953390 ccgacgacgaggccaagccgc 4953410
>dbj|AP004876.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0470G10 Length = 145419 Score = 42.1 bits (21), Expect = 6.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 116 cgacgacgaggccaagccgcg 136 ||||||||||||||||||||| Sbjct: 32913 cgacgacgaggccaagccgcg 32933
>gb|AC146757.19| Medicago truncatula clone mth2-16n21, complete sequence Length = 135915 Score = 42.1 bits (21), Expect = 6.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 657 aaagcagcttatgacatgttc 677 ||||||||||||||||||||| Sbjct: 111157 aaagcagcttatgacatgttc 111137 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 289,607,353 Number of extensions: 15576997 Number of successful extensions: 364525 Number of sequences better than 10.0: 38 Number of HSP's gapped: 364525 Number of HSP's successfully gapped: 68 Length of query: 1606 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1583 Effective length of database: 18,503,978,556 Effective search space: 29291798054148 Effective search space used: 29291798054148 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)