ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | FLbaf2g24 |
|---|---|
| Clone Library Name | barley_pub |
>P14897:ELI9_HORVU Low molecular mass early light-inducible protein HV90, chloroplast| precursor - Hordeum vulgare (Barley) Length = 172 Score = 190 bits (482), Expect = 6e-48 Identities = 103/157 (65%), Positives = 108/157 (68%) Frame = +1 Query: 148 LPRGSAGHFGAQSLPAMGRRALVVRAQTEGXXXXXXXXXXXXTSIWDALAFAGPAPERIN 327 +PR SA FGA+SLPA+GRRALVVRAQTEG TSIWD +AF+GPAPERIN Sbjct: 16 VPRSSASSFGARSLPALGRRALVVRAQTEGPSAPPPNKPKASTSIWDEMAFSGPAPERIN 75 Query: 328 GRLAMVGFVTALAVEAXXXXXXXXXXXXXXXXAWFXXXXXXXXXXXXXXXXQGESAEGRA 507 GRLAMVGFVTALAVEA AWF QGESAEGRA Sbjct: 76 GRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAVLSMASLVPLLQGESAEGRA 135 Query: 508 GTIMNANAELWNGRFAMLGLVALAATEIITGAPFINV 618 G IMNANAELWNGRFAMLGLVALAATEIITGAPFINV Sbjct: 136 GAIMNANAELWNGRFAMLGLVALAATEIITGAPFINV 172
>P14896:ELI6_HORVU Low molecular mass early light-inducible protein HV60, chloroplast| precursor - Hordeum vulgare (Barley) Length = 167 Score = 179 bits (455), Expect = 9e-45 Identities = 100/157 (63%), Positives = 105/157 (66%) Frame = +1 Query: 148 LPRGSAGHFGAQSLPAMGRRALVVRAQTEGXXXXXXXXXXXXTSIWDALAFAGPAPERIN 327 LPRGSA +SLPA+GRR LVVRAQTEG TSIWDA+AF+GPAPERIN Sbjct: 16 LPRGSA-----RSLPALGRRTLVVRAQTEGPNAPPPNKPKASTSIWDAMAFSGPAPERIN 70 Query: 328 GRLAMVGFVTALAVEAXXXXXXXXXXXXXXXXAWFXXXXXXXXXXXXXXXXQGESAEGRA 507 GRLAMVGFVTALAVEA AWF QGESAEGRA Sbjct: 71 GRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAMLSMASLVPLLQGESAEGRA 130 Query: 508 GTIMNANAELWNGRFAMLGLVALAATEIITGAPFINV 618 G IMNANAELWNGRFAM+GLVALAATEIITG PFINV Sbjct: 131 GAIMNANAELWNGRFAMIGLVALAATEIITGTPFINV 167
>P14895:ELI5_HORVU High molecular mass early light-inducible protein HV58, chloroplast| precursor - Hordeum vulgare (Barley) Length = 231 Score = 122 bits (306), Expect = 2e-27 Identities = 65/115 (56%), Positives = 75/115 (65%), Gaps = 1/115 (0%) Frame = +1 Query: 277 SIWDALAFAGPAPERINGRLAMVGFVTALAVEAXXXXXXXXXXXXXXXX-AWFXXXXXXX 453 S+WDALAF+GPAPERINGRLAMVGFV AL+VEA AWF Sbjct: 117 SVWDALAFSGPAPERINGRLAMVGFVAALSVEAARGGGLLDQVGMWSSGLAWFLATAGVF 176 Query: 454 XXXXXXXXXQGESAEGRAGTIMNANAELWNGRFAMLGLVALAATEIITGAPFINV 618 QG+S E ++ I +A+AELWNGRFAMLGLVALAATE ITGAPF+N+ Sbjct: 177 SVASLLPLLQGQSVESKSSGIWSADAELWNGRFAMLGLVALAATEFITGAPFVNI 231
>P11432:ELI_PEA Early light-induced protein, chloroplast precursor - Pisum sativum| (Garden pea) Length = 196 Score = 91.3 bits (225), Expect = 4e-18 Identities = 50/113 (44%), Positives = 62/113 (54%) Frame = +1 Query: 274 TSIWDALAFAGPAPERINGRLAMVGFVTALAVEAXXXXXXXXXXXXXXXXAWFXXXXXXX 453 T D +AF+GPAPERINGRLAM+GFV A+ VE AWF Sbjct: 85 TKFSDLMAFSGPAPERINGRLAMIGFVAAMGVEIAKGQGLSEQLSGGGV-AWFLGTSVLL 143 Query: 454 XXXXXXXXXQGESAEGRAGTIMNANAELWNGRFAMLGLVALAATEIITGAPFI 612 QG S E ++ +IM+++AE WNGR AMLGLVALA TE + G + Sbjct: 144 SLASLIPFFQGVSVESKSKSIMSSDAEFWNGRIAMLGLVALAFTEFVKGTSLV 196
>Q01931:DS22_CRAPL Desiccation stress protein DSP-22, chloroplast precursor -| Craterostigma plantagineum Length = 199 Score = 82.4 bits (202), Expect = 2e-15 Identities = 47/111 (42%), Positives = 57/111 (51%) Frame = +1 Query: 286 DALAFAGPAPERINGRLAMVGFVTALAVEAXXXXXXXXXXXXXXXXAWFXXXXXXXXXXX 465 D +F G APERINGR AM+GFV A+ VE WF Sbjct: 90 DLFSFDGLAPERINGRSAMIGFVAAVGVELATGRDVFSQVFNGGVM-WFLLTSAVLVLAT 148 Query: 466 XXXXXQGESAEGRAGTIMNANAELWNGRFAMLGLVALAATEIITGAPFINV 618 +G S E + N++AE+WNGRFAM+GLVALA TE + G P INV Sbjct: 149 LIPIYRGLSPEAKNNGFWNSDAEIWNGRFAMIGLVALAFTEYVKGGPLINV 199
>P27516:CBR_DUNBA Carotene biosynthesis-related protein CBR, chloroplast precursor -| Dunaliella bardawil Length = 172 Score = 42.0 bits (97), Expect = 0.003 Identities = 33/108 (30%), Positives = 44/108 (40%) Frame = +1 Query: 277 SIWDALAFAGPAPERINGRLAMVGFVTALAVEAXXXXXXXXXXXXXXXXAWFXXXXXXXX 456 ++ + + F+G APE INGRLAM+GFV AL E Sbjct: 66 TVTEVMGFSG-APEIINGRLAMLGFVAALGAELSTGESVLTQLGDQPTLIALTFVLFSAA 124 Query: 457 XXXXXXXXQGESAEGRAGTIMNANAELWNGRFAMLGLVALAATEIITG 600 + A G +AE+ NGRFAM+G A+ E I G Sbjct: 125 SLIPAFARRKGDAMGP----FTPDAEMTNGRFAMIGFAAMLVYEGIQG 168
>Q1XDD2:YCF17_PORYE Uncharacterized protein ycf17 - Porphyra yezoensis| Length = 48 Score = 36.6 bits (83), Expect = 0.12 Identities = 13/25 (52%), Positives = 20/25 (80%) Frame = +1 Query: 526 NAELWNGRFAMLGLVALAATEIITG 600 +AE WNGRFAM+G +++ E++TG Sbjct: 13 SAETWNGRFAMIGFISVIFIEVVTG 37
>P51355:YCF17_PORPU Uncharacterized protein ycf17 - Porphyra purpurea| Length = 48 Score = 36.6 bits (83), Expect = 0.12 Identities = 14/25 (56%), Positives = 20/25 (80%) Frame = +1 Query: 526 NAELWNGRFAMLGLVALAATEIITG 600 +AE WNGRFAM+G +A+ E++TG Sbjct: 13 SAETWNGRFAMIGFMAVIFIELVTG 37
>Q8YQR8:HEMH_ANASP Ferrochelatase - Anabaena sp. (strain PCC 7120)| Length = 388 Score = 36.6 bits (83), Expect = 0.12 Identities = 16/34 (47%), Positives = 25/34 (73%) Frame = +1 Query: 517 MNANAELWNGRFAMLGLVALAATEIITGAPFINV 618 M ++AE+WNGR AMLG +AL E++TG +++ Sbjct: 351 MTSSAEVWNGRIAMLGFIAL-IIELVTGQGLLHM 383
>Q0DIV0:HEMH_ORYSJ Ferrochelatase-2, chloroplast precursor - Oryza sativa subsp.| japonica (Rice) Length = 526 Score = 35.4 bits (80), Expect = 0.26 Identities = 15/30 (50%), Positives = 21/30 (70%) Frame = +1 Query: 526 NAELWNGRFAMLGLVALAATEIITGAPFIN 615 +AE WNGR AML ++AL E+ TG F++ Sbjct: 488 SAETWNGRAAMLAVLALLVLEVTTGEGFLH 517
>A2Y3Q5:HEMH_ORYSI Ferrochelatase-2, chloroplast precursor - Oryza sativa subsp.| indica (Rice) Length = 526 Score = 35.4 bits (80), Expect = 0.26 Identities = 15/30 (50%), Positives = 21/30 (70%) Frame = +1 Query: 526 NAELWNGRFAMLGLVALAATEIITGAPFIN 615 +AE WNGR AML ++AL E+ TG F++ Sbjct: 488 SAETWNGRAAMLAVLALLVLEVTTGEGFLH 517
>O04921:HEMH2_ARATH Ferrochelatase-2, chloroplast precursor - Arabidopsis thaliana| (Mouse-ear cress) Length = 512 Score = 35.4 bits (80), Expect = 0.26 Identities = 15/30 (50%), Positives = 21/30 (70%) Frame = +1 Query: 526 NAELWNGRFAMLGLVALAATEIITGAPFIN 615 +AE WNGR AML ++AL E+ TG F++ Sbjct: 475 SAETWNGRAAMLAVLALLVLEVTTGKGFLH 504
>P48367:YCF17_CYAPA Uncharacterized protein ycf17 - Cyanophora paradoxa| Length = 49 Score = 35.0 bits (79), Expect = 0.34 Identities = 15/26 (57%), Positives = 18/26 (69%) Frame = +1 Query: 523 ANAELWNGRFAMLGLVALAATEIITG 600 + AE WNGR AMLG +A TE +TG Sbjct: 14 SGAENWNGRLAMLGFIAALLTESLTG 39
>Q5N2B2:HEMH_SYNP6 Ferrochelatase - Synechococcus sp. (strain ATCC 27144 / PCC 6301 /| SAUG 1402/1) (Anacystis nidulans) Length = 387 Score = 35.0 bits (79), Expect = 0.34 Identities = 16/25 (64%), Positives = 20/25 (80%) Frame = +1 Query: 526 NAELWNGRFAMLGLVALAATEIITG 600 NAE+WNGR AMLG +AL E++TG Sbjct: 354 NAEVWNGRIAMLGFLAL-LVELLTG 377
>P17437:XP2_XENLA Skin secretory protein xP2 precursor - Xenopus laevis (African| clawed frog) Length = 439 Score = 34.3 bits (77), Expect = 0.58 Identities = 28/101 (27%), Positives = 34/101 (33%) Frame = -1 Query: 434 ANHACPVPLPSCERSPSPRPASTANAVTKPTMARRPLMRSGAGPANASASQIEVXXXXXX 255 A P P P+ +P+P PA P P G PA A A ++E Sbjct: 114 AEGGAPAPAPAEGEAPAPAPAEGEAPAPAPAEGEAPAPAEGEAPAPAPA-EVEAPAPAPA 172 Query: 254 XXXXXGPSVCALTTRARRPIAGRDWAPKWPAEPRGRTAAPA 132 P+ A P G AP PAE APA Sbjct: 173 EGEAPAPAPAEGEAPAPAPAEGEAPAPA-PAEGEAPAPAPA 212 Score = 32.0 bits (71), Expect = 2.9 Identities = 38/157 (24%), Positives = 47/157 (29%) Frame = -1 Query: 602 APVMISVAARATSPSMAKRPFQSSALAFMMVPALPSALSPWSNGXXXXXXXXXTE*ANHA 423 AP V A A +P+ + P + A PA +P A Sbjct: 158 APAPAEVEAPAPAPAEGEAPAPAPAEGEAPAPAPAEGEAPAPAPAEGEAPAPAPAPAEGE 217 Query: 422 CPVPLPSCERSPSPRPASTANAVTKPTMARRPLMRSGAGPANASASQIEVXXXXXXXXXX 243 P P P+ +P+P PA P P G A A A E Sbjct: 218 APAPAPAEGEAPAPAPAEGEAPAPAPAEGEAPAPAPAEGEAPAPA-PAEGEAPAPAPAEG 276 Query: 242 XGPSVCALTTRARRPIAGRDWAPKWPAEPRGRTAAPA 132 P+ A P G AP PAE APA Sbjct: 277 EAPAPAPAEGEAPAPAEGEAPAPA-PAEGEAPAPAPA 312 Score = 31.2 bits (69), Expect = 4.9 Identities = 28/101 (27%), Positives = 33/101 (32%) Frame = -1 Query: 434 ANHACPVPLPSCERSPSPRPASTANAVTKPTMARRPLMRSGAGPANASASQIEVXXXXXX 255 A+ P P P+ +P+P PA P P G PA A A E Sbjct: 76 ADGGAPAPAPAEGGAPAPAPAEGGAPAPAPAEGGAPAPAEGGAPAPAPA---EGEAPAPA 132 Query: 254 XXXXXGPSVCALTTRARRPIAGRDWAPKWPAEPRGRTAAPA 132 P+ A P G AP PAE APA Sbjct: 133 PAEGEAPAPAPAEGEAPAPAEGEAPAPA-PAEVEAPAPAPA 172
>P54225:HEMH_SYNY3 Ferrochelatase - Synechocystis sp. (strain PCC 6803)| Length = 387 Score = 32.7 bits (73), Expect = 1.7 Identities = 15/24 (62%), Positives = 19/24 (79%) Frame = +1 Query: 529 AELWNGRFAMLGLVALAATEIITG 600 AE+WNGR AMLG +AL E+I+G Sbjct: 355 AEVWNGRLAMLGFIAL-LVELISG 377
>Q8DGU6:HEMH_SYNEL Ferrochelatase - Synechococcus elongatus (Thermosynechococcus| elongatus) Length = 388 Score = 32.0 bits (71), Expect = 2.9 Identities = 16/28 (57%), Positives = 20/28 (71%) Frame = +1 Query: 517 MNANAELWNGRFAMLGLVALAATEIITG 600 M + AE WNGR AMLG +AL E+I+G Sbjct: 352 MTSAAERWNGRLAMLGFLAL-MIELISG 378
>Q6UY14:ATL4_HUMAN ADAMTS-like protein 4 precursor - Homo sapiens (Human)| Length = 1074 Score = 32.0 bits (71), Expect = 2.9 Identities = 16/50 (32%), Positives = 19/50 (38%) Frame = -3 Query: 339 GEAPVDALGCGAGECQRVPDRGARLGFVWRWCTRALGLCPDDKGAPAHRR 190 G P D C G C+R WRW T G C + G+ RR Sbjct: 894 GSRPPDMRACSLGPCERT----------WRWYTGPWGECSSECGSGTQRR 933
>Q9SQV1:RH40_ARATH Probable DEAD-box ATP-dependent RNA helicase 40 - Arabidopsis| thaliana (Mouse-ear cress) Length = 1088 Score = 31.2 bits (69), Expect = 4.9 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%) Frame = -1 Query: 410 LPSCERSPSPRPASTANAVTKPTMARRPLMRSGAGP-ANASASQIE 276 LP+ ERSPS ANA ++ T A + + GP ANA+ +Q + Sbjct: 242 LPNSERSPSQNTHFEANAASQKTNANLAMAQKCNGPQANAAVTQFQ 287
>Q8P7U7:IF2_XANCP Translation initiation factor IF-2 - Xanthomonas campestris pv.| campestris Length = 916 Score = 31.2 bits (69), Expect = 4.9 Identities = 16/47 (34%), Positives = 26/47 (55%) Frame = -1 Query: 425 ACPVPLPSCERSPSPRPASTANAVTKPTMARRPLMRSGAGPANASAS 285 + P P+ + +P+P A A A + P+ A RP +GA PA+ A+ Sbjct: 198 SAPAPVAA---APAPSSAPAARAPSSPSSAPRPARPAGASPASRPAT 241
>Q4UWA2:IF2_XANC8 Translation initiation factor IF-2 - Xanthomonas campestris pv.| campestris (strain 8004) Length = 902 Score = 31.2 bits (69), Expect = 4.9 Identities = 16/47 (34%), Positives = 26/47 (55%) Frame = -1 Query: 425 ACPVPLPSCERSPSPRPASTANAVTKPTMARRPLMRSGAGPANASAS 285 + P P+ + +P+P A A A + P+ A RP +GA PA+ A+ Sbjct: 184 SAPAPVAA---APAPSSAPAARAPSSPSSAPRPARPAGASPASRPAT 227
>Q7V6C6:HEMH_PROMM Ferrochelatase - Prochlorococcus marinus (strain MIT 9313)| Length = 391 Score = 31.2 bits (69), Expect = 4.9 Identities = 14/28 (50%), Positives = 19/28 (67%) Frame = +1 Query: 517 MNANAELWNGRFAMLGLVALAATEIITG 600 +N ++E WNGR AMLG A E+I+G Sbjct: 355 LNTSSEAWNGRIAMLGFAAF-LLELISG 381
>P27521:CB24_ARATH Chlorophyll a-b binding protein 4, chloroplast precursor -| Arabidopsis thaliana (Mouse-ear cress) Length = 251 Score = 31.2 bits (69), Expect = 4.9 Identities = 15/30 (50%), Positives = 19/30 (63%) Frame = +1 Query: 529 AELWNGRFAMLGLVALAATEIITGAPFINV 618 AEL NGR+AMLG+ + E+ T INV Sbjct: 95 AELVNGRWAMLGVAGMLLPEVFTKIGIINV 124
>Q05426:IF3_MYCFE Translation initiation factor IF-3 - Mycoplasma fermentans| Length = 212 Score = 30.8 bits (68), Expect = 6.5 Identities = 17/54 (31%), Positives = 26/54 (48%) Frame = -3 Query: 675 MINSHHLHVLGRRQS*FILHVDEGRASDDLRGRQSNKSEHGEAAVPELRVGVHD 514 +I H L+V R+ F+L D + S RGR+S + E G + + V D Sbjct: 101 LIGEHDLNVKARKAKEFLLDGDRIKVSLKFRGRESARPELGHKTLEKFYKAVED 154
>P54583:GUN1_ACIC1 Endoglucanase E1 precursor - Acidothermus cellulolyticus (strain| ATCC 43068 / 11B) Length = 562 Score = 30.8 bits (68), Expect = 6.5 Identities = 15/45 (33%), Positives = 21/45 (46%) Frame = -1 Query: 419 PVPLPSCERSPSPRPASTANAVTKPTMARRPLMRSGAGPANASAS 285 P P PS R+P+P P TA+ T P + P+ +AS Sbjct: 417 PSPSPSASRTPTPTPTPTASPTPTLTPTATPTPTASPTPSPTAAS 461
>O60641:AP180_HUMAN Clathrin coat assembly protein AP180 - Homo sapiens (Human)| Length = 907 Score = 30.8 bits (68), Expect = 6.5 Identities = 23/109 (21%), Positives = 42/109 (38%) Frame = -1 Query: 413 PLPSCERSPSPRPASTANAVTKPTMARRPLMRSGAGPANASASQIEVXXXXXXXXXXXGP 234 P+P+ SP+P A+ A A T T A + A A + +++ P Sbjct: 517 PVPATAPSPAPAVAAAAAATTAATAAATTTTTTSAATATTAPPALDI----FGDLFESTP 572 Query: 233 SVCALTTRARRPIAGRDWAPKWPAEPRGRTAAPATELMVIMVAINQLAA 87 V A P + + P+G + P + L +++++ AA Sbjct: 573 EVAAAPKPDAAPSIDLFSTDAFSSPPQGASPVPESSLTADLLSVDAFAA 621
>Q4V9P9:NOL11_DANRE Nucleolar protein 11-like - Danio rerio (Zebrafish) (Brachydanio| rerio) Length = 708 Score = 30.4 bits (67), Expect = 8.4 Identities = 16/46 (34%), Positives = 24/46 (52%) Frame = -1 Query: 623 FYTLMKGAPVMISVAARATSPSMAKRPFQSSALAFMMVPALPSALS 486 F L+ + SV S +MAKR FQ +AF + P +P A++ Sbjct: 458 FLQLLDTRYLCYSVCPELLSLAMAKRDFQLCQIAFQLFPDIPEAVT 503 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 108,172,549 Number of extensions: 2144174 Number of successful extensions: 8661 Number of sequences better than 10.0: 27 Number of HSP's gapped: 8461 Number of HSP's successfully gapped: 29 Length of query: 266 Length of database: 100,686,439 Length adjustment: 111 Effective length of query: 155 Effective length of database: 70,239,694 Effective search space: 10887152570 Effective search space used: 10887152570 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
