ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf5d15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AK109704:Os12g0256400 30 0.44
2AJ428900:Os02g0551400 29 1.3
3AK068448:Os02g0551400 29 1.3
4AK110040: 28 2.2
5Os08g0249400:Os08g0249400 27 4.9
6Os06g0239700:Os06g0239700 27 4.9
7Os05g0552600:Os05g0552600 27 6.3
8AK110427: 27 6.3
9AK099945:Os01g0889900 27 6.3
10AK068204:Os01g0254900 27 6.3
11Os07g0695700:Os07g0695700 26 8.3
12Os07g0453000:Os07g0453000 26 8.3
13AK108523:Os12g0472500 26 8.3

>AK109704:Os12g0256400 |
          Length = 272
 Score = 30.4 bits (67), Expect = 0.44
 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
 Frame = +1

Query: 31  RTQRSHRQTEAMAGAGGSLP---PSEVAPRCWACNW 129
           R++  H Q   +A     LP   P  + P CWAC W
Sbjct: 69  RSRMRHMQQPKVASTAPPLPKPPPRGLRPSCWACRW 104



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>AJ428900:Os02g0551400 |
          Length = 665

 Score = 28.9 bits (63), Expect = 1.3
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = +2

Query: 155 SIPRMATCPPPAFSIPCPLSVSPTQVLLPFALSHVLPTLDCTP 283
           S+   +  P P   +P P+ V P QV LP    H  P     P
Sbjct: 277 SVTAPSPLPVPVHVVPVPVPVQPVQVQLPPPQLHQAPAQSAPP 319



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>AK068448:Os02g0551400 |
          Length = 719

 Score = 28.9 bits (63), Expect = 1.3
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = +2

Query: 155 SIPRMATCPPPAFSIPCPLSVSPTQVLLPFALSHVLPTLDCTP 283
           S+   +  P P   +P P+ V P QV LP    H  P     P
Sbjct: 331 SVTAPSPLPVPVHVVPVPVPVQPVQVQLPPPQLHQAPAQSAPP 373



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>AK110040: |
          Length = 1332

 Score = 28.1 bits (61), Expect = 2.2
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -3

Query: 393 TAHTPFLFQEIPILSLEPKRERPQSQTYLHAILHMQQGVQS 271
           TA  P+L   +P L+ +  R+R +S ++LH +     G  S
Sbjct: 825 TASDPYLDNGMPALTRQHYRDRSRSSSHLHVLTGADTGYDS 865



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>Os08g0249400:Os08g0249400 |
          Length = 315

 Score = 26.9 bits (58), Expect = 4.9
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
 Frame = +2

Query: 161 PRMATCPPP-----AFSIPCPLSVSPTQVLLPFALSHVLPTLDCTPC 286
           P     PPP     A+S+P     SP+ V  P A + V  T D  PC
Sbjct: 189 PGYIAAPPPYNHYAAYSVPPVAMTSPSPVPGPTAYAPVQNTKDNPPC 235



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>Os06g0239700:Os06g0239700 |
          Length = 247

 Score = 26.9 bits (58), Expect = 4.9
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +2

Query: 170 ATCPPPAFSIPCPLSVSPTQVLLPFALSHVLPTLDCTP 283
           A+ P PA   P P S SP+  +LP  L H +P +  TP
Sbjct: 33  ASAPAPA---PAPGSTSPSPDVLPEILRHAVP-IKATP 66



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>Os05g0552600:Os05g0552600 |
          Length = 510

 Score = 26.6 bits (57), Expect = 6.3
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 161 PRMATCPPPAFSIPCPLSVSPTQVLLP 241
           PR +  PPP +S P P+S  P  V  P
Sbjct: 96  PRSSPPPPPVYSPPPPVSSPPPPVPSP 122



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>AK110427: |
          Length = 334

 Score = 26.6 bits (57), Expect = 6.3
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -3

Query: 123 ASPAPRRNLGGREGAASAS 67
           +SP P +N GGR G+AS+S
Sbjct: 180 SSPNPNKNGGGRAGSASSS 198



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>AK099945:Os01g0889900 |
          Length = 826

 Score = 26.6 bits (57), Expect = 6.3
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -2

Query: 85 GSRQRQPWPLSV-CGSSEFVIPITCIL 8
          G R+R+PW  S  CGS   ++ I+C+L
Sbjct: 6  GGRRRRPWSSSSSCGSPFLMMLISCLL 32



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>AK068204:Os01g0254900 |
          Length = 280

 Score = 26.6 bits (57), Expect = 6.3
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -3

Query: 111 PRRNLGGREGAASASHGLCLSVA 43
           PRR  GGR GAA+A  G   +VA
Sbjct: 15  PRRGGGGRAGAAAAGAGASQAVA 37



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>Os07g0695700:Os07g0695700 |
          Length = 248

 Score = 26.2 bits (56), Expect = 8.3
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = +2

Query: 158 IPRMATCPPPAFSIPCPLSVSPTQVLLPFALSHVLPTLDCTP 283
           +PR+ T PPP    P  L ++P          H  P L  TP
Sbjct: 57  VPRLLTTPPPPSPRPLQLQMAPR--------PHSSPNLTLTP 90



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>Os07g0453000:Os07g0453000 |
          Length = 1079

 Score = 26.2 bits (56), Expect = 8.3
 Identities = 17/38 (44%), Positives = 19/38 (50%)
 Frame = +2

Query: 149 SSSIPRMATCPPPAFSIPCPLSVSPTQVLLPFALSHVL 262
           SSS P     PPPA S P P+      V LP AL  +L
Sbjct: 108 SSSAPSAPAAPPPASSPPDPV------VSLPPALEAIL 139



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>AK108523:Os12g0472500 |
          Length = 226

 Score = 26.2 bits (56), Expect = 8.3
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +2

Query: 179 PPPAFSIPCPLSVSPTQVLLPFALS 253
           PPP  + P P +VSP     P  LS
Sbjct: 51  PPPPLAAPVPAAVSPAPATPPAVLS 75


  Database: orf_amino.fa.out
    Posted date:  Jul 26, 2007 11:37 AM
  Number of letters in database: 15,399,855
  Number of sequences in database:  40,041
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 40041
Number of Hits to DB: 13,083,011
Number of extensions: 309787
Number of successful extensions: 1069
Number of sequences better than 10.0: 13
Number of HSP's gapped: 1068
Number of HSP's successfully gapped: 13
Length of query: 138
Length of database: 15,399,855
Length adjustment: 90
Effective length of query: 48
Effective length of database: 11,796,165
Effective search space: 566215920
Effective search space used: 566215920
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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