| Clone Name | FLbaf10j24 |
|---|---|
| Clone Library Name | barley_pub |
>LOC_Os12g02800:12012.t00173:unspliced-genomic expressed protein| Length = 1278 Score = 78.0 bits (164), Expect(2) = 4e-22 Identities = 26/35 (74%), Positives = 31/35 (88%) Frame = +2 / +2 Query: 272 CPAGNNSSSCVDTQCCYGINCNIPGKPFGTCAFTP 376 C A +N+SSCVDT+CCY I+CNIPGKPFG CAF+P Sbjct: 911 CCASSNASSCVDTRCCYAIDCNIPGKPFGVCAFSP 1015 Score = 46.4 bits (95), Expect(2) = 4e-22 Identities = 15/21 (71%), Positives = 18/21 (85%) Frame = +2 / +2 Query: 233 AFEPFQLCMGCRCCPAGNNSS 295 A+EPF+LCMGCRCC + N SS Sbjct: 875 AYEPFELCMGCRCCASSNASS 937 Score = 44.1 bits (90), Expect(2) = 5e-08 Identities = 19/25 (76%), Positives = 19/25 (76%) Frame = -2 / -1 Query: 375 GVKAQVPNGLPGMLQLMP*QHCVST 301 G KAQ P GLPGMLQ M *QH VST Sbjct: 1014 GEKAQTPKGLPGMLQSMA*QHLVST 940 Score = 32.2 bits (64), Expect(2) = 5e-08 Identities = 13/21 (61%), Positives = 14/21 (66%) Frame = -2 / -1 Query: 291 LLFPAGQHRHPMHSWNGSNAS 229 L F QHR PMHS NGS A+ Sbjct: 933 LAFDDAQHRQPMHSSNGSYAA 871 Score = 40.5 bits (82), Expect = 0.010 Identities = 14/19 (73%), Positives = 18/19 (94%) Frame = +1 / +1 Query: 298 MRGHAVLLRHQLQHPRQAV 354 +RGH +LLRH+LQHPRQA+ Sbjct: 937 LRGHEMLLRHRLQHPRQAL 993
>LOC_Os11g02820:12011.t00174:unspliced-genomic expressed protein| Length = 850 Score = 78.0 bits (164), Expect(2) = 4e-22 Identities = 26/35 (74%), Positives = 31/35 (88%) Frame = +2 / +2 Query: 272 CPAGNNSSSCVDTQCCYGINCNIPGKPFGTCAFTP 376 C A +N+SSCVDT+CCY I+CNIPGKPFG CAF+P Sbjct: 449 CCASSNASSCVDTRCCYAIDCNIPGKPFGVCAFSP 553 Score = 46.4 bits (95), Expect(2) = 4e-22 Identities = 15/21 (71%), Positives = 18/21 (85%) Frame = +2 / +2 Query: 233 AFEPFQLCMGCRCCPAGNNSS 295 A+EPF+LCMGCRCC + N SS Sbjct: 413 AYEPFELCMGCRCCASSNASS 475 Score = 43.2 bits (88), Expect(2) = 1e-07 Identities = 19/25 (76%), Positives = 19/25 (76%) Frame = -2 / -2 Query: 375 GVKAQVPNGLPGMLQLMP*QHCVST 301 G KAQ P GLPGMLQ M *QH VST Sbjct: 552 GEKAQTPKGLPGMLQSMA*QHRVST 478 Score = 32.2 bits (64), Expect(2) = 1e-07 Identities = 13/21 (61%), Positives = 14/21 (66%) Frame = -2 / -2 Query: 291 LLFPAGQHRHPMHSWNGSNAS 229 L F QHR PMHS NGS A+ Sbjct: 471 LAFDDAQHRQPMHSSNGSYAA 409 Score = 41.8 bits (85), Expect = 0.004 Identities = 15/19 (78%), Positives = 18/19 (94%) Frame = +1 / +1 Query: 298 MRGHAVLLRHQLQHPRQAV 354 +RGH VLLRH+LQHPRQA+ Sbjct: 475 LRGHPVLLRHRLQHPRQAL 531
>LOC_Os11g27540:12011.t02368:unspliced-genomic expressed protein| Length = 1368 Score = 62.9 bits (131), Expect(2) = 8e-11 Identities = 20/37 (54%), Positives = 23/37 (62%) Frame = +2 / +2 Query: 269 CCPAGNNSSSCVDTQCCYGINCNIPGKPFGTCAFTPR 379 C G C+ CCY INCNIP +PFG C+FTPR Sbjct: 416 CTCCGGPHGVCIPAPCCYAINCNIPNRPFGVCSFTPR 526 Score = 23.1 bits (44), Expect(2) = 8e-11 Identities = 6/10 (60%), Positives = 7/10 (70%) Frame = +2 / +2 Query: 245 FQLCMGCRCC 274 FQ+C C CC Sbjct: 398 FQICAVCTCC 427 Score = 34.5 bits (69), Expect = 0.63 Identities = 16/27 (59%), Positives = 16/27 (59%) Frame = -2 / -1 Query: 378 RGVKAQVPNGLPGMLQLMP*QHCVSTH 298 RGVK Q P G GMLQLM *Q H Sbjct: 525 RGVKEQTPKGRFGMLQLMA*QQGAGMH 445
>LOC_Os01g68840:12001.t06239:unspliced-genomic expressed protein| Length = 973 Score = 60.6 bits (126), Expect = 9e-09 Identities = 20/42 (47%), Positives = 26/42 (61%) Frame = +2 / +2 Query: 254 CMGCRCCPAGNNSSSCVDTQCCYGINCNIPGKPFGTCAFTPR 379 C G G+ C+ + CCY INCNIP +PFG C+FTP+ Sbjct: 515 CCGGGGGGGGSRGGGCILSPCCYAINCNIPNRPFGFCSFTPK 640 Score = 35.4 bits (71), Expect = 0.34 Identities = 18/32 (56%), Positives = 18/32 (56%) Frame = -2 / -2 Query: 375 GVKAQVPNGLPGMLQLMP*QHCVSTHDELLFP 280 GVK Q P G GMLQLM *QH H L P Sbjct: 636 GVKEQKPKGRLGMLQLMA*QHGERMHPPPLDP 541
>LOC_Os06g30390:12006.t02742:unspliced-genomic expressed protein| Length = 6851 Score = 33.6 bits (67), Expect = 1.2 Identities = 13/30 (43%), Positives = 17/30 (56%) Frame = -2 / -2 Query: 327 MP*QHCVSTHDELLFPAGQHRHPMHSWNGS 238 +P QHC+S H L A Q+ H W+GS Sbjct: 3778 LPWQHCLSCHATLAGVAEQNYHACSGWHGS 3689
>LOC_Os03g37984:12003.t03250:unspliced-genomic cationic amino acid transporter, putative, expressed| Length = 5073 Score = 32.7 bits (65), Expect = 2.3 Identities = 12/23 (52%), Positives = 14/23 (60%) Frame = -2 / +1 Query: 288 LFPAGQHRHPMHSWNGSNASDAA 220 L AGQ RHP W G + +DAA Sbjct: 211 LLLAGQPRHPARGWRGDSRTDAA 279
>LOC_Os03g13070:12003.t01102:unspliced-genomic pathogenesis-related protein 5 precursor, putative| Length = 881 Score = 32.2 bits (64), Expect = 3.1 Identities = 12/33 (36%), Positives = 18/33 (54%) Frame = +2 / +3 Query: 269 CCPAGNNSSSCVDTQCCYGINCNIPGKPFGTCA 367 C P+G S +CV C ++C++ G P T A Sbjct: 339 CAPSGTASLACVTGDCGGAVSCSLGGAPPVTLA 437
>LOC_Os02g25210:12002.t02218:unspliced-genomic retrotransposon, putative, centromere-specific| Length = 1080 Score = 32.2 bits (64), Expect = 3.1 Identities = 10/24 (41%), Positives = 12/24 (50%) Frame = +2 / -3 Query: 263 CRCCPAGNNSSSCVDTQCCYGINC 334 C CC +SC T CCY +C Sbjct: 301 CCCCVIVLKFASCASTDCCYSRDC 230
>LOC_Os01g60140:12001.t05398:unspliced-genomic ATCHX15, putative, expressed| Length = 3220 Score = 32.2 bits (64), Expect = 3.1 Identities = 15/32 (46%), Positives = 19/32 (59%) Frame = +1 / -3 Query: 259 GVPVLPGGEQQLVMRGHAVLLRHQLQHPRQAV 354 GVP GG ++ RGH VLL HQ +H + V Sbjct: 2894 GVPGRRGGGRRGRRRGHHVLLHHQHRHRHREV 2799
>LOC_Os03g08110:12003.t00669:unspliced-genomic hydrolase, putative, expressed| Length = 5756 Score = 31.8 bits (63), Expect = 4.3 Identities = 10/16 (62%), Positives = 12/16 (75%) Frame = +2 / +2 Query: 254 CMGCRCCPAGNNSSSC 301 C CRCC +G +SSSC Sbjct: 80 CSRCRCCSSGCSSSSC 127
>LOC_Os08g01520:12008.t00051:unspliced-genomic cytochrome P450 71C4, putative| Length = 2048 Score = 31.3 bits (62), Expect = 5.8 Identities = 9/12 (75%), Positives = 9/12 (75%) Frame = -3 / -2 Query: 290 CCSPPGSTGTPC 255 CCSPP GTPC Sbjct: 697 CCSPPSDPGTPC 662
>LOC_Os01g40590:12001.t03583:unspliced-genomic protein kinase APK1A, chloroplast precursor, putative, expressed| Length = 5418 Score = 31.3 bits (62), Expect = 5.8 Identities = 11/25 (44%), Positives = 14/25 (56%) Frame = -2 / -2 Query: 273 QHRHPMHSWNGSNASDAADRYTTVR 199 +H H W S A+D AD YTT + Sbjct: 1133 KHEQLEHQWQHSKATDPADSYTTAQ 1059
>LOC_Os01g39250:12001.t03456:unspliced-genomic OsFtsH4 - Oryza sativa FtsH protease, homologue of AtFtsH4, expressed| Length = 5479 Score = 31.3 bits (62), Expect = 5.8 Identities = 11/26 (42%), Positives = 14/26 (53%) Frame = +2 / +2 Query: 269 CCPAGNNSSSCVDTQCCYGINCNIPG 346 CC N S C+DT+ C I C + G Sbjct: 2903 CCERW*NLSGCLDTELCQFIRCVLKG 2980
>LOC_Os10g17940:12010.t01350:unspliced-genomic F-box domain containing protein, expressed| Length = 1825 Score = 30.9 bits (61), Expect = 8.0 Identities = 14/32 (43%), Positives = 19/32 (59%) Frame = +1 / +2 Query: 253 MHGVPVLPGGEQQLVMRGHAVLLRHQLQHPRQ 348 +HGVP+L G Q L G AV + + Q PR+ Sbjct: 791 LHGVPILLVGHQGLGCGGQAVRCQDRRQAPRR 886
>LOC_Os10g06760:12010.t00543:unspliced-genomic receptor-like protein kinase precursor, putative, expressed| Length = 3743 Score = 30.9 bits (61), Expect = 8.0 Identities = 16/48 (33%), Positives = 20/48 (41%) Frame = +2 / -2 Query: 194 PVRTVVYRSAASEAFEPFQLCMGCRCCPAGNNSSSCVDTQCCYGINCN 337 P+ V RSA FQ C GCR + S C+ Q G + N Sbjct: 1822 PIHVVSVRSACLMTCAEFQDCSGCRAHEVLDLRSCCLRDQAL*GCSMN 1679
>LOC_Os01g59900:12001.t05377:unspliced-genomic expressed protein| Length = 3385 Score = 30.9 bits (61), Expect = 8.0 Identities = 11/27 (40%), Positives = 13/27 (48%) Frame = +2 / -3 Query: 263 CRCCPAGNNSSSCVDTQCCYGINCNIP 343 C CC G N+S CC G C+ P Sbjct: 2480 CCCCYCGENASCPFCFHCCCGCYCSWP 2400
>LOC_Os01g16880:12001.t01537:unspliced-genomic expressed protein| Length = 9000 Score = 30.9 bits (61), Expect = 8.0 Identities = 9/19 (47%), Positives = 10/19 (52%) Frame = +2 / -3 Query: 263 CRCCPAGNNSSSCVDTQCC 319 C CCPA N C +CC Sbjct: 1894 CTCCPAAQNK*VCSANKCC 1838 Database: tigr.seq.out Posted date: Jul 20, 2007 8:58 AM Number of letters in database: 166,841,660 Number of sequences in database: 56,278 Lambda K H 0.318 0.134 0.401 Matrix: BLOSUM62 Number of Sequences: 56278 Number of Hits to DB: 154,501,239 Number of extensions: 1977844 Number of successful extensions: 9505 Number of sequences better than 10.0: 17 Length of query: 195 Length of database: 55,613,886 Length adjustment: 48 Effective length of query: 147 Effective length of database: 52,912,542 Effective search space: 7778143674 Effective search space used: 7778143674 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.3 bits)