ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf10j24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LOC_Os12g02800:12012.t00173:unspliced-genomic expressed protein 78 4e-22
2LOC_Os11g02820:12011.t00174:unspliced-genomic expressed protein 78 4e-22
3LOC_Os11g27540:12011.t02368:unspliced-genomic expressed protein 63 8e-11
4LOC_Os01g68840:12001.t06239:unspliced-genomic expressed protein 61 9e-09
5LOC_Os06g30390:12006.t02742:unspliced-genomic expressed protein 34 1.2
6LOC_Os03g37984:12003.t03250:unspliced-genomic cationic amino... 33 2.3
7LOC_Os03g13070:12003.t01102:unspliced-genomic pathogenesis-r... 32 3.1
8LOC_Os02g25210:12002.t02218:unspliced-genomic retrotransposo... 32 3.1
9LOC_Os01g60140:12001.t05398:unspliced-genomic ATCHX15, putat... 32 3.1
10LOC_Os03g08110:12003.t00669:unspliced-genomic hydrolase, put... 32 4.3
11LOC_Os08g01520:12008.t00051:unspliced-genomic cytochrome P45... 31 5.8
12LOC_Os01g40590:12001.t03583:unspliced-genomic protein kinase... 31 5.8
13LOC_Os01g39250:12001.t03456:unspliced-genomic OsFtsH4 - Oryz... 31 5.8
14LOC_Os10g17940:12010.t01350:unspliced-genomic F-box domain c... 31 8.0
15LOC_Os10g06760:12010.t00543:unspliced-genomic receptor-like ... 31 8.0
16LOC_Os01g59900:12001.t05377:unspliced-genomic expressed protein 31 8.0
17LOC_Os01g16880:12001.t01537:unspliced-genomic expressed protein 31 8.0

>LOC_Os12g02800:12012.t00173:unspliced-genomic expressed protein|
          Length = 1278
 Score = 78.0 bits (164), Expect(2) = 4e-22
 Identities = 26/35 (74%), Positives = 31/35 (88%)
 Frame = +2 / +2

                                               
Query: 272  CPAGNNSSSCVDTQCCYGINCNIPGKPFGTCAFTP 376
            C A +N+SSCVDT+CCY I+CNIPGKPFG CAF+P
Sbjct: 911  CCASSNASSCVDTRCCYAIDCNIPGKPFGVCAFSP 1015



 Score = 46.4 bits (95), Expect(2) = 4e-22
 Identities = 15/21 (71%), Positives = 18/21 (85%)
 Frame = +2 / +2

                                
Query: 233 AFEPFQLCMGCRCCPAGNNSS 295
           A+EPF+LCMGCRCC + N SS
Sbjct: 875 AYEPFELCMGCRCCASSNASS 937



 Score = 44.1 bits (90), Expect(2) = 5e-08
 Identities = 19/25 (76%), Positives = 19/25 (76%)
 Frame = -2 / -1

                                     
Query: 375  GVKAQVPNGLPGMLQLMP*QHCVST 301
            G KAQ P GLPGMLQ M *QH VST
Sbjct: 1014 GEKAQTPKGLPGMLQSMA*QHLVST 940



 Score = 32.2 bits (64), Expect(2) = 5e-08
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = -2 / -1

                                
Query: 291 LLFPAGQHRHPMHSWNGSNAS 229
           L F   QHR PMHS NGS A+
Sbjct: 933 LAFDDAQHRQPMHSSNGSYAA 871



 Score = 40.5 bits (82), Expect = 0.010
 Identities = 14/19 (73%), Positives = 18/19 (94%)
 Frame = +1 / +1

                              
Query: 298 MRGHAVLLRHQLQHPRQAV 354
           +RGH +LLRH+LQHPRQA+
Sbjct: 937 LRGHEMLLRHRLQHPRQAL 993



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>LOC_Os11g02820:12011.t00174:unspliced-genomic expressed protein|
          Length = 850

 Score = 78.0 bits (164), Expect(2) = 4e-22
 Identities = 26/35 (74%), Positives = 31/35 (88%)
 Frame = +2 / +2

                                              
Query: 272 CPAGNNSSSCVDTQCCYGINCNIPGKPFGTCAFTP 376
           C A +N+SSCVDT+CCY I+CNIPGKPFG CAF+P
Sbjct: 449 CCASSNASSCVDTRCCYAIDCNIPGKPFGVCAFSP 553



 Score = 46.4 bits (95), Expect(2) = 4e-22
 Identities = 15/21 (71%), Positives = 18/21 (85%)
 Frame = +2 / +2

                                
Query: 233 AFEPFQLCMGCRCCPAGNNSS 295
           A+EPF+LCMGCRCC + N SS
Sbjct: 413 AYEPFELCMGCRCCASSNASS 475



 Score = 43.2 bits (88), Expect(2) = 1e-07
 Identities = 19/25 (76%), Positives = 19/25 (76%)
 Frame = -2 / -2

                                    
Query: 375 GVKAQVPNGLPGMLQLMP*QHCVST 301
           G KAQ P GLPGMLQ M *QH VST
Sbjct: 552 GEKAQTPKGLPGMLQSMA*QHRVST 478



 Score = 32.2 bits (64), Expect(2) = 1e-07
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = -2 / -2

                                
Query: 291 LLFPAGQHRHPMHSWNGSNAS 229
           L F   QHR PMHS NGS A+
Sbjct: 471 LAFDDAQHRQPMHSSNGSYAA 409



 Score = 41.8 bits (85), Expect = 0.004
 Identities = 15/19 (78%), Positives = 18/19 (94%)
 Frame = +1 / +1

                              
Query: 298 MRGHAVLLRHQLQHPRQAV 354
           +RGH VLLRH+LQHPRQA+
Sbjct: 475 LRGHPVLLRHRLQHPRQAL 531



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>LOC_Os11g27540:12011.t02368:unspliced-genomic expressed protein|
          Length = 1368

 Score = 62.9 bits (131), Expect(2) = 8e-11
 Identities = 20/37 (54%), Positives = 23/37 (62%)
 Frame = +2 / +2

                                                
Query: 269 CCPAGNNSSSCVDTQCCYGINCNIPGKPFGTCAFTPR 379
           C   G     C+   CCY INCNIP +PFG C+FTPR
Sbjct: 416 CTCCGGPHGVCIPAPCCYAINCNIPNRPFGVCSFTPR 526



 Score = 23.1 bits (44), Expect(2) = 8e-11
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = +2 / +2

                     
Query: 245 FQLCMGCRCC 274
           FQ+C  C CC
Sbjct: 398 FQICAVCTCC 427



 Score = 34.5 bits (69), Expect = 0.63
 Identities = 16/27 (59%), Positives = 16/27 (59%)
 Frame = -2 / -1

                                      
Query: 378 RGVKAQVPNGLPGMLQLMP*QHCVSTH 298
           RGVK Q P G  GMLQLM *Q     H
Sbjct: 525 RGVKEQTPKGRFGMLQLMA*QQGAGMH 445



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>LOC_Os01g68840:12001.t06239:unspliced-genomic expressed protein|
          Length = 973

 Score = 60.6 bits (126), Expect = 9e-09
 Identities = 20/42 (47%), Positives = 26/42 (61%)
 Frame = +2 / +2

                                                     
Query: 254 CMGCRCCPAGNNSSSCVDTQCCYGINCNIPGKPFGTCAFTPR 379
           C G      G+    C+ + CCY INCNIP +PFG C+FTP+
Sbjct: 515 CCGGGGGGGGSRGGGCILSPCCYAINCNIPNRPFGFCSFTPK 640



 Score = 35.4 bits (71), Expect = 0.34
 Identities = 18/32 (56%), Positives = 18/32 (56%)
 Frame = -2 / -2

                                           
Query: 375 GVKAQVPNGLPGMLQLMP*QHCVSTHDELLFP 280
           GVK Q P G  GMLQLM *QH    H   L P
Sbjct: 636 GVKEQKPKGRLGMLQLMA*QHGERMHPPPLDP 541



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>LOC_Os06g30390:12006.t02742:unspliced-genomic expressed protein|
          Length = 6851

 Score = 33.6 bits (67), Expect = 1.2
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2 / -2

                                          
Query: 327  MP*QHCVSTHDELLFPAGQHRHPMHSWNGS 238
            +P QHC+S H  L   A Q+ H    W+GS
Sbjct: 3778 LPWQHCLSCHATLAGVAEQNYHACSGWHGS 3689



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>LOC_Os03g37984:12003.t03250:unspliced-genomic cationic amino acid transporter, putative, expressed|
          Length = 5073

 Score = 32.7 bits (65), Expect = 2.3
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2 / +1

                                  
Query: 288 LFPAGQHRHPMHSWNGSNASDAA 220
           L  AGQ RHP   W G + +DAA
Sbjct: 211 LLLAGQPRHPARGWRGDSRTDAA 279



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>LOC_Os03g13070:12003.t01102:unspliced-genomic pathogenesis-related protein 5 precursor, putative|
          Length = 881

 Score = 32.2 bits (64), Expect = 3.1
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2 / +3

                                            
Query: 269 CCPAGNNSSSCVDTQCCYGINCNIPGKPFGTCA 367
           C P+G  S +CV   C   ++C++ G P  T A
Sbjct: 339 CAPSGTASLACVTGDCGGAVSCSLGGAPPVTLA 437



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>LOC_Os02g25210:12002.t02218:unspliced-genomic retrotransposon, putative, centromere-specific|
          Length = 1080

 Score = 32.2 bits (64), Expect = 3.1
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +2 / -3

                                   
Query: 263 CRCCPAGNNSSSCVDTQCCYGINC 334
           C CC      +SC  T CCY  +C
Sbjct: 301 CCCCVIVLKFASCASTDCCYSRDC 230



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>LOC_Os01g60140:12001.t05398:unspliced-genomic ATCHX15, putative, expressed|
          Length = 3220

 Score = 32.2 bits (64), Expect = 3.1
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = +1 / -3

                                            
Query: 259  GVPVLPGGEQQLVMRGHAVLLRHQLQHPRQAV 354
            GVP   GG ++   RGH VLL HQ +H  + V
Sbjct: 2894 GVPGRRGGGRRGRRRGHHVLLHHQHRHRHREV 2799



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>LOC_Os03g08110:12003.t00669:unspliced-genomic hydrolase, putative, expressed|
          Length = 5756

 Score = 31.8 bits (63), Expect = 4.3
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +2 / +2

                           
Query: 254 CMGCRCCPAGNNSSSC 301
           C  CRCC +G +SSSC
Sbjct: 80  CSRCRCCSSGCSSSSC 127



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>LOC_Os08g01520:12008.t00051:unspliced-genomic cytochrome P450 71C4, putative|
          Length = 2048

 Score = 31.3 bits (62), Expect = 5.8
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = -3 / -2

                       
Query: 290 CCSPPGSTGTPC 255
           CCSPP   GTPC
Sbjct: 697 CCSPPSDPGTPC 662



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>LOC_Os01g40590:12001.t03583:unspliced-genomic protein kinase APK1A, chloroplast precursor, putative, expressed|
          Length = 5418

 Score = 31.3 bits (62), Expect = 5.8
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2 / -2

                                     
Query: 273  QHRHPMHSWNGSNASDAADRYTTVR 199
            +H    H W  S A+D AD YTT +
Sbjct: 1133 KHEQLEHQWQHSKATDPADSYTTAQ 1059



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>LOC_Os01g39250:12001.t03456:unspliced-genomic OsFtsH4 - Oryza sativa FtsH protease, homologue of AtFtsH4, expressed|
          Length = 5479

 Score = 31.3 bits (62), Expect = 5.8
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2 / +2

                                      
Query: 269  CCPAGNNSSSCVDTQCCYGINCNIPG 346
            CC    N S C+DT+ C  I C + G
Sbjct: 2903 CCERW*NLSGCLDTELCQFIRCVLKG 2980



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>LOC_Os10g17940:12010.t01350:unspliced-genomic F-box domain containing protein, expressed|
          Length = 1825

 Score = 30.9 bits (61), Expect = 8.0
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +1 / +2

                                           
Query: 253 MHGVPVLPGGEQQLVMRGHAVLLRHQLQHPRQ 348
           +HGVP+L  G Q L   G AV  + + Q PR+
Sbjct: 791 LHGVPILLVGHQGLGCGGQAVRCQDRRQAPRR 886



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>LOC_Os10g06760:12010.t00543:unspliced-genomic receptor-like protein kinase precursor, putative, expressed|
          Length = 3743

 Score = 30.9 bits (61), Expect = 8.0
 Identities = 16/48 (33%), Positives = 20/48 (41%)
 Frame = +2 / -2

                                                            
Query: 194  PVRTVVYRSAASEAFEPFQLCMGCRCCPAGNNSSSCVDTQCCYGINCN 337
            P+  V  RSA       FQ C GCR     +  S C+  Q   G + N
Sbjct: 1822 PIHVVSVRSACLMTCAEFQDCSGCRAHEVLDLRSCCLRDQAL*GCSMN 1679



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>LOC_Os01g59900:12001.t05377:unspliced-genomic expressed protein|
          Length = 3385

 Score = 30.9 bits (61), Expect = 8.0
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +2 / -3

                                       
Query: 263  CRCCPAGNNSSSCVDTQCCYGINCNIP 343
            C CC  G N+S      CC G  C+ P
Sbjct: 2480 CCCCYCGENASCPFCFHCCCGCYCSWP 2400



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>LOC_Os01g16880:12001.t01537:unspliced-genomic expressed protein|
          Length = 9000

 Score = 30.9 bits (61), Expect = 8.0
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +2 / -3

                               
Query: 263  CRCCPAGNNSSSCVDTQCC 319
            C CCPA  N   C   +CC
Sbjct: 1894 CTCCPAAQNK*VCSANKCC 1838


  Database: tigr.seq.out
    Posted date:  Jul 20, 2007  8:58 AM
  Number of letters in database: 166,841,660
  Number of sequences in database:  56,278
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Sequences: 56278
Number of Hits to DB: 154,501,239
Number of extensions: 1977844
Number of successful extensions: 9505
Number of sequences better than 10.0: 17
Length of query: 195
Length of database: 55,613,886
Length adjustment: 48
Effective length of query: 147
Effective length of database: 52,912,542
Effective search space: 7778143674
Effective search space used: 7778143674
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
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