ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf10g16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Q50604:Y1829_MYCTU Uncharacterized protein Rv1829/MT1877 - Mycob... 54 2e-06
2P53882:YNR6_YEAST Uncharacterized protein YNL176C - Saccharomyce... 32 5.1
3Q96MN2:NALP4_HUMAN NACHT, LRR and PYD domains-containing protein... 32 6.7
4Q12121:YD211_YEAST Uncharacterized protein YDL211C - Saccharomyc... 32 8.7
5P70399:TP53B_MOUSE Tumor suppressor p53-binding protein 1 - Mus ... 32 8.7

>Q50604:Y1829_MYCTU Uncharacterized protein Rv1829/MT1877 - Mycobacterium tuberculosis|
          Length = 164
 Score = 53.9 bits (128), Expect = 2e-06
 Identities = 31/123 (25%), Positives = 65/123 (52%), Gaps = 1/123 (0%)
 Frame = +3

Query: 570 RVLRLRDSTPHHAIVLKMEDGS-DLLLPIIVMETPSIMLLAALRNIRIPRPTIYNVVKEM 746
           RV+ +R   P +  VL + + + D  LPI + ++ +  +    + +  PRP  +++++++
Sbjct: 5   RVVGIRVEQPQNQPVLLLREANGDRYLPIWIGQSEAAAIALEQQGVEPPRPLTHDLIRDL 64

Query: 747 TEMMGYTVRLVRITEMVHDAYYSRLYLAKTGNEEEVISFDLKPSDAINIAFRCKVPIQVI 926
              +G++++ VRI ++    +Y+ L   +       I    +PSD++ IA R  VPI V 
Sbjct: 65  IAALGHSLKEVRIVDLQEGTFYADLIFDRN------IKVSARPSDSVAIALRVGVPIYVE 118

Query: 927 SAL 935
            A+
Sbjct: 119 EAV 121



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>P53882:YNR6_YEAST Uncharacterized protein YNL176C - Saccharomyces cerevisiae (Baker's|
           yeast)
          Length = 636

 Score = 32.3 bits (72), Expect = 5.1
 Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
 Frame = -2

Query: 664 SMTIMGSRRSLPSSILSTIAW*GVESRSLSTRGLFWTHLR---FLPSRILITKPSDTHLS 494
           S++   S  S PSS+L + +     S S S   LF    R   F PS   +  PS T+LS
Sbjct: 156 SLSSSWSSLSSPSSLLVSSSLSLSLSSSYSDTKLFSFDSRSSIFSPSTPTVISPSYTYLS 215

Query: 493 STASMTLESTNSSPLASKFAGGAPSPS 413
           S ++ + + + +S L+S +     SPS
Sbjct: 216 SISATSFQISTTSELSSSWFSTISSPS 242



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>Q96MN2:NALP4_HUMAN NACHT, LRR and PYD domains-containing protein 4 - Homo sapiens|
            (Human)
          Length = 994

 Score = 32.0 bits (71), Expect = 6.7
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 1264 SYVHIHIVHLDVCRSFYFLGKGHYVHPHLAL 1172
            SYV +H+   + C + ++L K H  HPH A+
Sbjct: 447  SYVFLHVCIQEFCAALFYLLKSHLDHPHPAV 477



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>Q12121:YD211_YEAST Uncharacterized protein YDL211C - Saccharomyces cerevisiae (Baker's|
           yeast)
          Length = 372

 Score = 31.6 bits (70), Expect = 8.7
 Identities = 19/53 (35%), Positives = 28/53 (52%)
 Frame = -2

Query: 595 VESRSLSTRGLFWTHLRFLPSRILITKPSDTHLSSTASMTLESTNSSPLASKF 437
           V+S     RGL  T   F  S++   +PS T L++  S T  ST++S + S F
Sbjct: 91  VQSNITIDRGLLSTLKTFTTSQVPTIEPSTTKLTTPLSTTFTSTSTSEIYSVF 143



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>P70399:TP53B_MOUSE Tumor suppressor p53-binding protein 1 - Mus musculus (Mouse)|
          Length = 1957

 Score = 31.6 bits (70), Expect = 8.7
 Identities = 18/54 (33%), Positives = 24/54 (44%)
 Frame = +3

Query: 309  SPGDYHAVSPRFFGAPTQHHSTGSWPVRCSYGSSSDGDGAPPANFDASGEEFVD 470
            S GD   +S     A + HH++    +   + S S G GA P    ASG E  D
Sbjct: 1280 SSGDLGDISSFSSKASSSHHTSSGTSLSAIHSSGSSGRGAGPLKGKASGTEAAD 1333


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 252,882,857
Number of extensions: 5685521
Number of successful extensions: 15115
Number of sequences better than 10.0: 5
Number of HSP's gapped: 15104
Number of HSP's successfully gapped: 5
Length of query: 483
Length of database: 100,686,439
Length adjustment: 117
Effective length of query: 366
Effective length of database: 68,593,924
Effective search space: 25105376184
Effective search space used: 25105376184
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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