| Clone Name | FLbaf10g16 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001050527.1| Oryza sativa (japonica cultivar-group) Os01g0702000 (Os01g0702000) mRNA, complete cds Length = 1347 Score = 666 bits (336), Expect = 0.0 Identities = 682/796 (85%), Gaps = 1/796 (0%) Strand = Plus / Plus Query: 380 ctggcctgttcgctgcagctacggctcgtcatctgacggggacggcgccccgccggcgaa 439 |||||||||| | ||||| ||||||||||| || ||||||||||||||| | | ||| | Sbjct: 317 ctggcctgtttgttgcagttacggctcgtcttccgacggggacggcgccgctgccgcgga 376 Query: 440 cttcgacgccagcggcgaggagttcgtcgactccagcgtcatggaggctgtggagctcag 499 | ||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||| Sbjct: 377 ttacgacgccagcggcgaggagttcgtcaactccagcgtgatggaggctgttgagctcag 436 Query: 500 atgtgtgtcagatggtttcgtgatcagaatgcgcgacggaagaaaccttaggtgtgtcca 559 | |||| || ||||| || ||||| | |||||| || || | ||||||||| |||||||| Sbjct: 437 aagtgtatctgatggatttgtgattaaaatgcgtgatggcaaaaaccttagatgtgtcca 496 Query: 560 gaataacccccgcgtgctaaggctgcgggattctacgcctcaccatgctatcgtgctcaa 619 || ||||| || || |||| ||||||||||| | |||||||||||||| || || || Sbjct: 497 aaacaacccgcgggtattaagattgcgggattctgcacctcaccatgctattgttctgaa 556 Query: 620 gatggaagatgggagcgatcttctgctccccattattgtcatggagacaccaagtattat 679 |||||||||||| || |||||| |||| || ||||| |||||||| |||||||||||||| Sbjct: 557 gatggaagatggaagtgatcttttgcttccaattatcgtcatggaaacaccaagtattat 616 Query: 680 gctactggccgcccttcggaacattcggattccaaggccaacaatttataatgtggtaaa 739 | | ||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||| Sbjct: 617 gttgctggctgcccttcggaacattcgaattccaaggccaactatttataatgtggtaaa 676 Query: 740 ggagatgaccgaaatgatgggatacacggtacgtttggtgcggattacagaaatggtgca 799 |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| || Sbjct: 677 ggagatgaccgaaaggatgggatatgcggtacgtttggtgcggattacagaaatggtcca 736 Query: 800 tgatgcttactactctagattgtatcttgcaaagactggaaatgaagaagaggttattag 859 |||||| ||||| ||| ||||||||||||| |||| ||| |||||||| ||| |||||| Sbjct: 737 tgatgcatactattctcgattgtatcttgctaagattggcaatgaagaggagactattag 796 Query: 860 ttttgatctcaagccatcagatgccatcaacattgctttccggtgcaaggttcctataca 919 || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 797 cttagatctcaagccatcagatgccatcaacattgctttccggtgtaaggttcctataca 856 Query: 920 agt-cataagcgcattgcatacaacaacggtctgaaagtgatacagccaaagccaactgg 978 ||| ||| ||| || || || ||||| || ||||||| |||| |||| ||| ||| Sbjct: 857 agtgaataggcgtatagcgtataacaatggattgaaagttgtacaaccaacaccatctga 916 Query: 979 gagctacgtgaactctgaccaaatccaatacgcgagactggacaagcccggcgaccagcc 1038 |||||| || | ||| |||||| |||||||| | ||||| |||| ||| | ||| || || Sbjct: 917 gagctatgtaagctcagaccaattccaatacacaagacttgacaggcctgacgatcaacc 976 Query: 1039 ttgctttgaagcccaggagtttgatttggtgcgcggcatgcttgttgctgctgttgagga 1098 ||||||||| ||||| |||||||||||||| ||| ||||| || |||||||||||||| Sbjct: 977 ttgctttgaggcccaagagtttgatttggtccgcaatatgctggtcgctgctgttgagga 1036 Query: 1099 acgttataaagatgctgctcaatacagagatcgccttctcatgttccgggcaaacaaaaa 1158 ||| || ||||||||||||||||||||||||| ||| |||||||||||||||| ||||| Sbjct: 1037 acgctacaaagatgctgctcaatacagagatcagcttttcatgttccgggcaaagaaaaa 1096 Query: 1159 gaacacgatataacag 1174 ||||| ||| |||||| Sbjct: 1097 gaacatgatttaacag 1112
>dbj|AK065414.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013022J10, full insert sequence Length = 1348 Score = 666 bits (336), Expect = 0.0 Identities = 682/796 (85%), Gaps = 1/796 (0%) Strand = Plus / Plus Query: 380 ctggcctgttcgctgcagctacggctcgtcatctgacggggacggcgccccgccggcgaa 439 |||||||||| | ||||| ||||||||||| || ||||||||||||||| | | ||| | Sbjct: 318 ctggcctgtttgttgcagttacggctcgtcttccgacggggacggcgccgctgccgcgga 377 Query: 440 cttcgacgccagcggcgaggagttcgtcgactccagcgtcatggaggctgtggagctcag 499 | ||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||| Sbjct: 378 ttacgacgccagcggcgaggagttcgtcaactccagcgtgatggaggctgttgagctcag 437 Query: 500 atgtgtgtcagatggtttcgtgatcagaatgcgcgacggaagaaaccttaggtgtgtcca 559 | |||| || ||||| || ||||| | |||||| || || | ||||||||| |||||||| Sbjct: 438 aagtgtatctgatggatttgtgattaaaatgcgtgatggcaaaaaccttagatgtgtcca 497 Query: 560 gaataacccccgcgtgctaaggctgcgggattctacgcctcaccatgctatcgtgctcaa 619 || ||||| || || |||| ||||||||||| | |||||||||||||| || || || Sbjct: 498 aaacaacccgcgggtattaagattgcgggattctgcacctcaccatgctattgttctgaa 557 Query: 620 gatggaagatgggagcgatcttctgctccccattattgtcatggagacaccaagtattat 679 |||||||||||| || |||||| |||| || ||||| |||||||| |||||||||||||| Sbjct: 558 gatggaagatggaagtgatcttttgcttccaattatcgtcatggaaacaccaagtattat 617 Query: 680 gctactggccgcccttcggaacattcggattccaaggccaacaatttataatgtggtaaa 739 | | ||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||| Sbjct: 618 gttgctggctgcccttcggaacattcgaattccaaggccaactatttataatgtggtaaa 677 Query: 740 ggagatgaccgaaatgatgggatacacggtacgtttggtgcggattacagaaatggtgca 799 |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| || Sbjct: 678 ggagatgaccgaaaggatgggatatgcggtacgtttggtgcggattacagaaatggtcca 737 Query: 800 tgatgcttactactctagattgtatcttgcaaagactggaaatgaagaagaggttattag 859 |||||| ||||| ||| ||||||||||||| |||| ||| |||||||| ||| |||||| Sbjct: 738 tgatgcatactattctcgattgtatcttgctaagattggcaatgaagaggagactattag 797 Query: 860 ttttgatctcaagccatcagatgccatcaacattgctttccggtgcaaggttcctataca 919 || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 798 cttagatctcaagccatcagatgccatcaacattgctttccggtgtaaggttcctataca 857 Query: 920 agt-cataagcgcattgcatacaacaacggtctgaaagtgatacagccaaagccaactgg 978 ||| ||| ||| || || || ||||| || ||||||| |||| |||| ||| ||| Sbjct: 858 agtgaataggcgtatagcgtataacaatggattgaaagttgtacaaccaacaccatctga 917 Query: 979 gagctacgtgaactctgaccaaatccaatacgcgagactggacaagcccggcgaccagcc 1038 |||||| || | ||| |||||| |||||||| | ||||| |||| ||| | ||| || || Sbjct: 918 gagctatgtaagctcagaccaattccaatacacaagacttgacaggcctgacgatcaacc 977 Query: 1039 ttgctttgaagcccaggagtttgatttggtgcgcggcatgcttgttgctgctgttgagga 1098 ||||||||| ||||| |||||||||||||| ||| ||||| || |||||||||||||| Sbjct: 978 ttgctttgaggcccaagagtttgatttggtccgcaatatgctggtcgctgctgttgagga 1037 Query: 1099 acgttataaagatgctgctcaatacagagatcgccttctcatgttccgggcaaacaaaaa 1158 ||| || ||||||||||||||||||||||||| ||| |||||||||||||||| ||||| Sbjct: 1038 acgctacaaagatgctgctcaatacagagatcagcttttcatgttccgggcaaagaaaaa 1097 Query: 1159 gaacacgatataacag 1174 ||||| ||| |||||| Sbjct: 1098 gaacatgatttaacag 1113
>gb|DQ872164.1| Oryza minuta DNA-binding protein DSP1 mRNA, complete cds Length = 1337 Score = 650 bits (328), Expect = 0.0 Identities = 673/784 (85%), Gaps = 3/784 (0%) Strand = Plus / Plus Query: 393 tgcagctacggctcgtcatctgacggggacggcgcc-ccgccggcgaacttcgacgccag 451 ||||| ||||||||||| || ||||||||||||||| |||||| ||| | ||||||||| Sbjct: 300 tgcagttacggctcgtcttccgacggggacggcgccgccgccgccgat-tacgacgccag 358 Query: 452 cggcgaggagttcgtcgactccagcgtcatggaggctgtggagctcagatgtgtgtcaga 511 |||||||||||||||| |||||||||| ||||||||||| ||||||||| | || || || Sbjct: 359 cggcgaggagttcgtcaactccagcgtgatggaggctgttgagctcagaagcgtatctga 418 Query: 512 tggtttcgtgatcagaatgcgcgacggaagaaaccttaggtgtgtccagaataacccccg 571 ||| || ||||| | |||||| ||||| | ||| ||||| |||||||| || ||||| || Sbjct: 419 tggatttgtgataaaaatgcgtgacggcaaaaatcttagatgtgtccaaaacaacccgcg 478 Query: 572 cgtgctaaggctgcgggattctacgcctcaccatgctatcgtgctcaagatggaagatgg 631 || ||||| ||||||||||| |||||||||||||||| || || |||||||||||||| Sbjct: 479 tgtactaagattgcgggattctgcgcctcaccatgctattgttctgaagatggaagatgg 538 Query: 632 gagcgatcttctgctccccattattgtcatggagacaccaagtattatgctactggccgc 691 || |||||| |||| || |||||||||||||| ||||||||||||||| | ||||| || Sbjct: 539 aagtgatcttttgcttccaattattgtcatggaaacaccaagtattatgttgctggctgc 598 Query: 692 ccttcggaacattcggattccaaggccaacaatttataatgtggtaaaggagatgaccga 751 |||||| |||||||| |||||||||||||| |||||||||||||||||||||||||| || Sbjct: 599 ccttcgaaacattcgaattccaaggccaactatttataatgtggtaaaggagatgactga 658 Query: 752 aatgatgggatacacggtacgtttggtgcggattacagaaatggtgcatgatgcttacta 811 || ||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||| Sbjct: 659 aaggatgggatatgcggtacgtttggtgcggattacagaaatggtccatgatgcatacta 718 Query: 812 ctctagattgtatcttgcaaagactggaaatgaagaagaggttattagttttgatctcaa 871 ||| | ||||||||||| |||| ||| |||||||| ||| |||||| || |||||||| Sbjct: 719 ttctcggttgtatcttgctaagattgggaatgaagaggagactattagcttagatctcaa 778 Query: 872 gccatcagatgccatcaacattgctttccggtgcaaggttcctatacaagt-cataagcg 930 ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||| Sbjct: 779 gccatcagatgccatcaacattgctttccggtgtaaggttcctatacaagtgaataggcg 838 Query: 931 cattgcatacaacaacggtctgaaagtgatacagccaaagccaactgggagctacgtgaa 990 || || || ||||| || ||||||| |||| |||| |||| ||| |||||| || | Sbjct: 839 tatagcgtataacaatggattgaaagttgtacaaccaacgccatctgagagctatgtaag 898 Query: 991 ctctgaccaaatccaatacgcgagactggacaagcccggcgaccagccttgctttgaagc 1050 ||| |||||| |||||||| | ||||| |||| ||| | ||| || |||||||| || || Sbjct: 899 ctcagaccaattccaatacacaagacttgacaggcctgacgatcaaccttgcttcgaggc 958 Query: 1051 ccaggagtttgatttggtgcgcggcatgcttgttgctgctgttgaggaacgttataaaga 1110 ||| |||||||||||||| ||| ||||| || ||||||||||||||||| || ||||| Sbjct: 959 ccaagagtttgatttggtccgcaatatgctggtcgctgctgttgaggaacgctacaaaga 1018 Query: 1111 tgctgctcaatacagagatcgccttctcatgttccgggcaaacaaaaagaacacgatata 1170 |||||||||||||||||||| ||| |||||||||||||||| |||||||||| ||| || Sbjct: 1019 tgctgctcaatacagagatcagcttttcatgttccgggcaaagaaaaagaacatgattta 1078 Query: 1171 acag 1174 |||| Sbjct: 1079 acag 1082
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 107 bits (54), Expect = 1e-19 Identities = 96/110 (87%) Strand = Plus / Minus Query: 380 ctggcctgttcgctgcagctacggctcgtcatctgacggggacggcgccccgccggcgaa 439 |||||||||| | ||||| ||||||||||| || ||||||||||||||| | | ||| | Sbjct: 29069078 ctggcctgtttgttgcagttacggctcgtcttccgacggggacggcgccgctgccgcgga 29069019 Query: 440 cttcgacgccagcggcgaggagttcgtcgactccagcgtcatggaggctg 489 | ||||||||||||||||||||||||| |||||||||| |||||||||| Sbjct: 29069018 ttacgacgccagcggcgaggagttcgtcaactccagcgtgatggaggctg 29068969 Score = 93.7 bits (47), Expect = 2e-15 Identities = 65/71 (91%) Strand = Plus / Minus Query: 840 aatgaagaagaggttattagttttgatctcaagccatcagatgccatcaacattgctttc 899 |||||||| ||| |||||| || |||||||||||||||||||||||||||||||||||| Sbjct: 29067513 aatgaagaggagactattagcttagatctcaagccatcagatgccatcaacattgctttc 29067454 Query: 900 cggtgcaaggt 910 ||||| ||||| Sbjct: 29067453 cggtgtaaggt 29067443 Score = 93.7 bits (47), Expect = 2e-15 Identities = 59/63 (93%) Strand = Plus / Minus Query: 767 ggtacgtttggtgcggattacagaaatggtgcatgatgcttactactctagattgtatct 826 |||||||||||||||||||||||||||||| |||||||| ||||| ||| |||||||||| Sbjct: 29067912 ggtacgtttggtgcggattacagaaatggtccatgatgcatactattctcgattgtatct 29067853 Query: 827 tgc 829 ||| Sbjct: 29067852 tgc 29067850 Score = 89.7 bits (45), Expect = 3e-14 Identities = 51/53 (96%) Strand = Plus / Minus Query: 711 ccaaggccaacaatttataatgtggtaaaggagatgaccgaaatgatgggata 763 ||||||||||| ||||||||||||||||||||||||||||||| ||||||||| Sbjct: 29068262 ccaaggccaactatttataatgtggtaaaggagatgaccgaaaggatgggata 29068210 Score = 89.7 bits (45), Expect = 3e-14 Identities = 138/169 (81%) Strand = Plus / Minus Query: 492 gagctcagatgtgtgtcagatggtttcgtgatcagaatgcgcgacggaagaaaccttagg 551 ||||||||| |||| || ||||| || ||||| | |||||| || || | ||||||||| Sbjct: 29068686 gagctcagaagtgtatctgatggatttgtgattaaaatgcgtgatggcaaaaaccttaga 29068627 Query: 552 tgtgtccagaataacccccgcgtgctaaggctgcgggattctacgcctcaccatgctatc 611 |||||||| || ||||| || || |||| ||||||||||| | |||||||||||||| Sbjct: 29068626 tgtgtccaaaacaacccgcgggtattaagattgcgggattctgcacctcaccatgctatt 29068567 Query: 612 gtgctcaagatggaagatgggagcgatcttctgctccccattattgtca 660 || || |||||||||||||| || |||||| |||| || ||||| |||| Sbjct: 29068566 gttctgaagatggaagatggaagtgatcttttgcttccaattatcgtca 29068518 Score = 77.8 bits (39), Expect = 1e-10 Identities = 69/79 (87%) Strand = Plus / Minus Query: 1037 ccttgctttgaagcccaggagtttgatttggtgcgcggcatgcttgttgctgctgttgag 1096 ||||||||||| ||||| |||||||||||||| ||| ||||| || |||||||||||| Sbjct: 29066792 ccttgctttgaggcccaagagtttgatttggtccgcaatatgctggtcgctgctgttgag 29066733 Query: 1097 gaacgttataaagatgctg 1115 ||||| || |||||||||| Sbjct: 29066732 gaacgctacaaagatgctg 29066714 Score = 71.9 bits (36), Expect = 6e-09 Identities = 54/60 (90%) Strand = Plus / Minus Query: 1115 gctcaatacagagatcgccttctcatgttccgggcaaacaaaaagaacacgatataacag 1174 |||||||||||||||| ||| |||||||||||||||| |||||||||| ||| |||||| Sbjct: 29066452 gctcaatacagagatcagcttttcatgttccgggcaaagaaaaagaacatgatttaacag 29066393 Score = 60.0 bits (30), Expect = 2e-05 Identities = 42/46 (91%) Strand = Plus / Minus Query: 661 tggagacaccaagtattatgctactggccgcccttcggaacattcg 706 |||| ||||||||||||||| | ||||| ||||||||||||||||| Sbjct: 29068430 tggaaacaccaagtattatgttgctggctgcccttcggaacattcg 29068385
>dbj|AP003378.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0047E11 Length = 148109 Score = 107 bits (54), Expect = 1e-19 Identities = 96/110 (87%) Strand = Plus / Minus Query: 380 ctggcctgttcgctgcagctacggctcgtcatctgacggggacggcgccccgccggcgaa 439 |||||||||| | ||||| ||||||||||| || ||||||||||||||| | | ||| | Sbjct: 113436 ctggcctgtttgttgcagttacggctcgtcttccgacggggacggcgccgctgccgcgga 113377 Query: 440 cttcgacgccagcggcgaggagttcgtcgactccagcgtcatggaggctg 489 | ||||||||||||||||||||||||| |||||||||| |||||||||| Sbjct: 113376 ttacgacgccagcggcgaggagttcgtcaactccagcgtgatggaggctg 113327 Score = 93.7 bits (47), Expect = 2e-15 Identities = 65/71 (91%) Strand = Plus / Minus Query: 840 aatgaagaagaggttattagttttgatctcaagccatcagatgccatcaacattgctttc 899 |||||||| ||| |||||| || |||||||||||||||||||||||||||||||||||| Sbjct: 111871 aatgaagaggagactattagcttagatctcaagccatcagatgccatcaacattgctttc 111812 Query: 900 cggtgcaaggt 910 ||||| ||||| Sbjct: 111811 cggtgtaaggt 111801 Score = 93.7 bits (47), Expect = 2e-15 Identities = 59/63 (93%) Strand = Plus / Minus Query: 767 ggtacgtttggtgcggattacagaaatggtgcatgatgcttactactctagattgtatct 826 |||||||||||||||||||||||||||||| |||||||| ||||| ||| |||||||||| Sbjct: 112270 ggtacgtttggtgcggattacagaaatggtccatgatgcatactattctcgattgtatct 112211 Query: 827 tgc 829 ||| Sbjct: 112210 tgc 112208 Score = 89.7 bits (45), Expect = 3e-14 Identities = 51/53 (96%) Strand = Plus / Minus Query: 711 ccaaggccaacaatttataatgtggtaaaggagatgaccgaaatgatgggata 763 ||||||||||| ||||||||||||||||||||||||||||||| ||||||||| Sbjct: 112620 ccaaggccaactatttataatgtggtaaaggagatgaccgaaaggatgggata 112568 Score = 89.7 bits (45), Expect = 3e-14 Identities = 138/169 (81%) Strand = Plus / Minus Query: 492 gagctcagatgtgtgtcagatggtttcgtgatcagaatgcgcgacggaagaaaccttagg 551 ||||||||| |||| || ||||| || ||||| | |||||| || || | ||||||||| Sbjct: 113044 gagctcagaagtgtatctgatggatttgtgattaaaatgcgtgatggcaaaaaccttaga 112985 Query: 552 tgtgtccagaataacccccgcgtgctaaggctgcgggattctacgcctcaccatgctatc 611 |||||||| || ||||| || || |||| ||||||||||| | |||||||||||||| Sbjct: 112984 tgtgtccaaaacaacccgcgggtattaagattgcgggattctgcacctcaccatgctatt 112925 Query: 612 gtgctcaagatggaagatgggagcgatcttctgctccccattattgtca 660 || || |||||||||||||| || |||||| |||| || ||||| |||| Sbjct: 112924 gttctgaagatggaagatggaagtgatcttttgcttccaattatcgtca 112876 Score = 77.8 bits (39), Expect = 1e-10 Identities = 69/79 (87%) Strand = Plus / Minus Query: 1037 ccttgctttgaagcccaggagtttgatttggtgcgcggcatgcttgttgctgctgttgag 1096 ||||||||||| ||||| |||||||||||||| ||| ||||| || |||||||||||| Sbjct: 111150 ccttgctttgaggcccaagagtttgatttggtccgcaatatgctggtcgctgctgttgag 111091 Query: 1097 gaacgttataaagatgctg 1115 ||||| || |||||||||| Sbjct: 111090 gaacgctacaaagatgctg 111072 Score = 71.9 bits (36), Expect = 6e-09 Identities = 54/60 (90%) Strand = Plus / Minus Query: 1115 gctcaatacagagatcgccttctcatgttccgggcaaacaaaaagaacacgatataacag 1174 |||||||||||||||| ||| |||||||||||||||| |||||||||| ||| |||||| Sbjct: 110810 gctcaatacagagatcagcttttcatgttccgggcaaagaaaaagaacatgatttaacag 110751 Score = 60.0 bits (30), Expect = 2e-05 Identities = 42/46 (91%) Strand = Plus / Minus Query: 661 tggagacaccaagtattatgctactggccgcccttcggaacattcg 706 |||| ||||||||||||||| | ||||| ||||||||||||||||| Sbjct: 112788 tggaaacaccaagtattatgttgctggctgcccttcggaacattcg 112743
>dbj|AP003245.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0421H07 Length = 158126 Score = 107 bits (54), Expect = 1e-19 Identities = 96/110 (87%) Strand = Plus / Minus Query: 380 ctggcctgttcgctgcagctacggctcgtcatctgacggggacggcgccccgccggcgaa 439 |||||||||| | ||||| ||||||||||| || ||||||||||||||| | | ||| | Sbjct: 29444 ctggcctgtttgttgcagttacggctcgtcttccgacggggacggcgccgctgccgcgga 29385 Query: 440 cttcgacgccagcggcgaggagttcgtcgactccagcgtcatggaggctg 489 | ||||||||||||||||||||||||| |||||||||| |||||||||| Sbjct: 29384 ttacgacgccagcggcgaggagttcgtcaactccagcgtgatggaggctg 29335 Score = 93.7 bits (47), Expect = 2e-15 Identities = 65/71 (91%) Strand = Plus / Minus Query: 840 aatgaagaagaggttattagttttgatctcaagccatcagatgccatcaacattgctttc 899 |||||||| ||| |||||| || |||||||||||||||||||||||||||||||||||| Sbjct: 27879 aatgaagaggagactattagcttagatctcaagccatcagatgccatcaacattgctttc 27820 Query: 900 cggtgcaaggt 910 ||||| ||||| Sbjct: 27819 cggtgtaaggt 27809 Score = 93.7 bits (47), Expect = 2e-15 Identities = 59/63 (93%) Strand = Plus / Minus Query: 767 ggtacgtttggtgcggattacagaaatggtgcatgatgcttactactctagattgtatct 826 |||||||||||||||||||||||||||||| |||||||| ||||| ||| |||||||||| Sbjct: 28278 ggtacgtttggtgcggattacagaaatggtccatgatgcatactattctcgattgtatct 28219 Query: 827 tgc 829 ||| Sbjct: 28218 tgc 28216 Score = 89.7 bits (45), Expect = 3e-14 Identities = 51/53 (96%) Strand = Plus / Minus Query: 711 ccaaggccaacaatttataatgtggtaaaggagatgaccgaaatgatgggata 763 ||||||||||| ||||||||||||||||||||||||||||||| ||||||||| Sbjct: 28628 ccaaggccaactatttataatgtggtaaaggagatgaccgaaaggatgggata 28576 Score = 89.7 bits (45), Expect = 3e-14 Identities = 138/169 (81%) Strand = Plus / Minus Query: 492 gagctcagatgtgtgtcagatggtttcgtgatcagaatgcgcgacggaagaaaccttagg 551 ||||||||| |||| || ||||| || ||||| | |||||| || || | ||||||||| Sbjct: 29052 gagctcagaagtgtatctgatggatttgtgattaaaatgcgtgatggcaaaaaccttaga 28993 Query: 552 tgtgtccagaataacccccgcgtgctaaggctgcgggattctacgcctcaccatgctatc 611 |||||||| || ||||| || || |||| ||||||||||| | |||||||||||||| Sbjct: 28992 tgtgtccaaaacaacccgcgggtattaagattgcgggattctgcacctcaccatgctatt 28933 Query: 612 gtgctcaagatggaagatgggagcgatcttctgctccccattattgtca 660 || || |||||||||||||| || |||||| |||| || ||||| |||| Sbjct: 28932 gttctgaagatggaagatggaagtgatcttttgcttccaattatcgtca 28884 Score = 77.8 bits (39), Expect = 1e-10 Identities = 69/79 (87%) Strand = Plus / Minus Query: 1037 ccttgctttgaagcccaggagtttgatttggtgcgcggcatgcttgttgctgctgttgag 1096 ||||||||||| ||||| |||||||||||||| ||| ||||| || |||||||||||| Sbjct: 27158 ccttgctttgaggcccaagagtttgatttggtccgcaatatgctggtcgctgctgttgag 27099 Query: 1097 gaacgttataaagatgctg 1115 ||||| || |||||||||| Sbjct: 27098 gaacgctacaaagatgctg 27080 Score = 71.9 bits (36), Expect = 6e-09 Identities = 54/60 (90%) Strand = Plus / Minus Query: 1115 gctcaatacagagatcgccttctcatgttccgggcaaacaaaaagaacacgatataacag 1174 |||||||||||||||| ||| |||||||||||||||| |||||||||| ||| |||||| Sbjct: 26818 gctcaatacagagatcagcttttcatgttccgggcaaagaaaaagaacatgatttaacag 26759 Score = 60.0 bits (30), Expect = 2e-05 Identities = 42/46 (91%) Strand = Plus / Minus Query: 661 tggagacaccaagtattatgctactggccgcccttcggaacattcg 706 |||| ||||||||||||||| | ||||| ||||||||||||||||| Sbjct: 28796 tggaaacaccaagtattatgttgctggctgcccttcggaacattcg 28751
>gb|AY661659.1| Sorghum bicolor clone BAC 75D9, complete sequence Length = 204120 Score = 103 bits (52), Expect = 2e-18 Identities = 81/88 (92%), Gaps = 2/88 (2%) Strand = Plus / Minus Query: 401 cggctcgtcatctgacggggacggcgcc-ccgccggcgaacttcgacgccagcggcgagg 459 |||||| || || ||||| ||||||||| |||||| || ||||||||||||||||||||| Sbjct: 87538 cggctcctcctccgacggcgacggcgccgccgccg-cggacttcgacgccagcggcgagg 87480 Query: 460 agttcgtcgactccagcgtcatggaggc 487 |||||||||||||||||||||||||||| Sbjct: 87479 agttcgtcgactccagcgtcatggaggc 87452 Score = 81.8 bits (41), Expect = 6e-12 Identities = 53/57 (92%) Strand = Plus / Minus Query: 854 tattagttttgatctcaagccatcagatgccatcaacattgctttccggtgcaaggt 910 |||||||||||| ||||||||||| ||||| ||||||||||||||||| |||||||| Sbjct: 86566 tattagttttgacctcaagccatcggatgctatcaacattgctttccgttgcaaggt 86510 Score = 79.8 bits (40), Expect = 3e-11 Identities = 115/140 (82%) Strand = Plus / Minus Query: 513 ggtttcgtgatcagaatgcgcgacggaagaaaccttaggtgtgtccagaataacccccgc 572 |||||||| |||| ||||||||||| | ||||| ||||| || ||||| ||||| || Sbjct: 87319 ggtttcgtcatcaagatgcgcgacggcaagaacctgaggtgcgtgcagaacaaccctcgg 87260 Query: 573 gtgctaaggctgcgggattctacgcctcaccatgctatcgtgctcaagatggaagatggg 632 ||||| ||||| ||||| || |||| ||||| || || ||||||||||||||||| || Sbjct: 87259 gtgctcaggctccgggactcggcgccgcaccacgcgattgtgctcaagatggaagacggc 87200 Query: 633 agcgatcttctgctccccat 652 ||||| || ||||||||||| Sbjct: 87199 agcgacctcctgctccccat 87180 Score = 77.8 bits (39), Expect = 1e-10 Identities = 57/63 (90%) Strand = Plus / Minus Query: 771 cgtttggtgcggattacagaaatggtgcatgatgcttactactctagattgtatcttgca 830 |||||||||||||||||||||||||| ||||| || ||||| ||| || ||||||||||| Sbjct: 86736 cgtttggtgcggattacagaaatggtccatgacgcatactattctcgactgtatcttgca 86677 Query: 831 aag 833 ||| Sbjct: 86676 aag 86674
>ref|NM_001068159.1| Oryza sativa (japonica cultivar-group) Os08g0357000 (Os08g0357000) mRNA, complete cds Length = 1524 Score = 63.9 bits (32), Expect = 2e-06 Identities = 44/48 (91%) Strand = Plus / Plus Query: 876 tcagatgccatcaacattgctttccggtgcaaggttcctatacaagtc 923 ||||||||||| ||||||||| | || ||||||||||||||||||||| Sbjct: 920 tcagatgccataaacattgctgttcgctgcaaggttcctatacaagtc 967
>dbj|AK112035.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-G04, full insert sequence Length = 1119 Score = 63.9 bits (32), Expect = 2e-06 Identities = 44/48 (91%) Strand = Plus / Plus Query: 876 tcagatgccatcaacattgctttccggtgcaaggttcctatacaagtc 923 ||||||||||| ||||||||| | || ||||||||||||||||||||| Sbjct: 646 tcagatgccataaacattgctgttcgctgcaaggttcctatacaagtc 693
>dbj|AK105899.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-F07, full insert sequence Length = 1460 Score = 63.9 bits (32), Expect = 2e-06 Identities = 44/48 (91%) Strand = Plus / Plus Query: 876 tcagatgccatcaacattgctttccggtgcaaggttcctatacaagtc 923 ||||||||||| ||||||||| | || ||||||||||||||||||||| Sbjct: 941 tcagatgccataaacattgctgttcgctgcaaggttcctatacaagtc 988
>dbj|AK070322.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023052C20, full insert sequence Length = 1525 Score = 63.9 bits (32), Expect = 2e-06 Identities = 44/48 (91%) Strand = Plus / Plus Query: 876 tcagatgccatcaacattgctttccggtgcaaggttcctatacaagtc 923 ||||||||||| ||||||||| | || ||||||||||||||||||||| Sbjct: 921 tcagatgccataaacattgctgttcgctgcaaggttcctatacaagtc 968
>gb|AY106382.1| Zea mays PCO146928 mRNA sequence Length = 1474 Score = 56.0 bits (28), Expect = 4e-04 Identities = 43/48 (89%) Strand = Plus / Plus Query: 876 tcagatgccatcaacattgctttccggtgcaaggttcctatacaagtc 923 ||||||||||| ||||||||| | || |||||||||||| |||||||| Sbjct: 908 tcagatgccataaacattgctgttcgttgcaaggttcctgtacaagtc 955
>emb|Z19058.1|GGCEK7A G.gallus Cek7 gene Length = 2396 Score = 48.1 bits (24), Expect = 0.089 Identities = 24/24 (100%) Strand = Plus / Plus Query: 1202 tttgccaaggaaatagaagcttcg 1225 |||||||||||||||||||||||| Sbjct: 392 tttgccaaggaaatagaagcttcg 415
>ref|NM_205105.1| Gallus gallus EPH receptor A5 (EPHA5), mRNA gb|U03910.1|GGCEK7B Gallus gallus receptor-type protein-tyrosine kinase precursor (Cek7) mRNA, complete cds Length = 4124 Score = 48.1 bits (24), Expect = 0.089 Identities = 24/24 (100%) Strand = Plus / Plus Query: 1202 tttgccaaggaaatagaagcttcg 1225 |||||||||||||||||||||||| Sbjct: 2008 tttgccaaggaaatagaagcttcg 2031
>gb|DQ167205.1| Zea mays putative wound responsive protein mRNA, complete cds Length = 717 Score = 46.1 bits (23), Expect = 0.35 Identities = 35/39 (89%) Strand = Plus / Plus Query: 876 tcagatgccatcaacattgctttccggtgcaaggttcct 914 ||||||||||| ||||||||| | || |||||||||||| Sbjct: 664 tcagatgccataaacattgctgttcgttgcaaggttcct 702
>ref|XM_001087164.1| PREDICTED: Macaca mulatta similar to CG18769-PB, isoform B (LOC698670), mRNA Length = 2208 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1048 agcccaggagtttgatttggtg 1069 |||||||||||||||||||||| Sbjct: 1463 agcccaggagtttgatttggtg 1442
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 44.1 bits (22), Expect = 1.4 Identities = 28/30 (93%) Strand = Plus / Plus Query: 440 cttcgacgccagcggcgaggagttcgtcga 469 ||||||||||| ||||||||| |||||||| Sbjct: 5351194 cttcgacgccaccggcgaggatttcgtcga 5351223
>emb|AL390965.15| Human DNA sequence from clone RP11-640E11 on chromosome 13 Contains a solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5 (SLC25A5) pseudogene, complete sequence Length = 92179 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1275 acttttaatatttttcctcttt 1296 |||||||||||||||||||||| Sbjct: 66975 acttttaatatttttcctcttt 66954
>gb|AC188604.4| Gallus gallus BAC clone CH261-37M8 from chromosome z, complete sequence Length = 195075 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1190 tacatagtgacctttgccaag 1210 ||||||||||||||||||||| Sbjct: 192948 tacatagtgacctttgccaag 192968
>gb|AC186874.3| Gallus gallus BAC clone TAM31-31H9 from chromosome z, complete sequence Length = 185763 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1190 tacatagtgacctttgccaag 1210 ||||||||||||||||||||| Sbjct: 130605 tacatagtgacctttgccaag 130585
>ref|NM_001056841.1| Oryza sativa (japonica cultivar-group) Os03g0399000 (Os03g0399000) mRNA, complete cds Length = 2091 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 448 ccagcggcgaggagttcgtcg 468 ||||||||||||||||||||| Sbjct: 948 ccagcggcgaggagttcgtcg 968
>ref|NM_001056840.1| Oryza sativa (japonica cultivar-group) Os03g0398900 (Os03g0398900) mRNA, complete cds Length = 1679 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 448 ccagcggcgaggagttcgtcg 468 ||||||||||||||||||||| Sbjct: 874 ccagcggcgaggagttcgtcg 854
>gb|AC091787.6| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0087G11, complete sequence Length = 169728 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 448 ccagcggcgaggagttcgtcg 468 ||||||||||||||||||||| Sbjct: 59911 ccagcggcgaggagttcgtcg 59891
>gb|AC122910.5| Mus musculus BAC clone RP23-54P3 from chromosome 6, complete sequence Length = 221390 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1278 tttaatatttttcctctttga 1298 ||||||||||||||||||||| Sbjct: 102092 tttaatatttttcctctttga 102072
>gb|AC114574.8| Mus musculus chromosome 6, clone RP23-151F20, complete sequence Length = 252723 Score = 42.1 bits (21), Expect = 5.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 838 gaaatgaagaagaggttattagttt 862 ||||||||||||||||||| ||||| Sbjct: 226544 gaaatgaagaagaggttataagttt 226520
>gb|AC145985.2| Pan troglodytes BAC clone RP43-17I24 from 7, complete sequence Length = 162953 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 175 agaaaagggagatggaggtca 195 ||||||||||||||||||||| Sbjct: 155337 agaaaagggagatggaggtca 155317
>gb|AC164097.2| Mus musculus BAC clone RP23-141F18 from chromosome 16, complete sequence Length = 217725 Score = 42.1 bits (21), Expect = 5.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1228 aaacatcaagatgcacgatgtgaat 1252 |||||||||||||||| |||||||| Sbjct: 183170 aaacatcaagatgcactatgtgaat 183194
>gb|AC153155.6| Mus musculus BAC clone RP23-25J23 from chromosome 18, complete sequence Length = 227880 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1272 gtaacttttaatatttttcct 1292 ||||||||||||||||||||| Sbjct: 192279 gtaacttttaatatttttcct 192259
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 448 ccagcggcgaggagttcgtcg 468 ||||||||||||||||||||| Sbjct: 15985040 ccagcggcgaggagttcgtcg 15985060
>emb|AL365500.9| Human DNA sequence from clone RP11-232C13 on chromosome 10 Contains the 5' end of a novel gene, complete sequence Length = 153558 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1045 tgaagcccaggagtttgattt 1065 ||||||||||||||||||||| Sbjct: 33354 tgaagcccaggagtttgattt 33374
>gb|AC154705.2| Mus musculus BAC clone RP23-131F11 from chromosome 16, complete sequence Length = 177886 Score = 42.1 bits (21), Expect = 5.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1228 aaacatcaagatgcacgatgtgaat 1252 |||||||||||||||| |||||||| Sbjct: 144910 aaacatcaagatgcactatgtgaat 144886
>dbj|AK107457.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-128-C11, full insert sequence Length = 1679 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 448 ccagcggcgaggagttcgtcg 468 ||||||||||||||||||||| Sbjct: 874 ccagcggcgaggagttcgtcg 854
>dbj|AK069492.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023021B13, full insert sequence Length = 2092 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 448 ccagcggcgaggagttcgtcg 468 ||||||||||||||||||||| Sbjct: 949 ccagcggcgaggagttcgtcg 969
>gb|AC154019.3| Mus musculus 6 BAC RP24-374A6 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 169229 Score = 42.1 bits (21), Expect = 5.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 838 gaaatgaagaagaggttattagttt 862 ||||||||||||||||||| ||||| Sbjct: 145682 gaaatgaagaagaggttataagttt 145706
>emb|AL110292.4|CNS018P1 Human chromosome 14 DNA sequence BAC R-384J4 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 177427 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1042 ctttgaagcccaggagtttga 1062 ||||||||||||||||||||| Sbjct: 122882 ctttgaagcccaggagtttga 122902
>gb|AC148011.3| Mus musculus BAC clone RP23-202I21 from 18, complete sequence Length = 220253 Score = 42.1 bits (21), Expect = 5.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1272 gtaacttttaatatttttcct 1292 ||||||||||||||||||||| Sbjct: 103086 gtaacttttaatatttttcct 103106 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 239,177,427 Number of extensions: 13018088 Number of successful extensions: 302163 Number of sequences better than 10.0: 36 Number of HSP's gapped: 302154 Number of HSP's successfully gapped: 60 Length of query: 1451 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1428 Effective length of database: 18,503,978,556 Effective search space: 26423681377968 Effective search space used: 26423681377968 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)