| Clone Name | FLbaf2f01 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001074965.1| Oryza sativa (japonica cultivar-group) Os11g0672300 (Os11g0672300) mRNA, complete cds Length = 1829 Score = 264 bits (133), Expect = 9e-67 Identities = 298/353 (84%) Strand = Plus / Plus Query: 135 gcgcagtttgcaggagtggacgcctacgggctcatcaagatgatcgccgacgcggcgcag 194 |||||||| || ||||||||||||||||| || ||||||||||||||||| ||||||||| Sbjct: 83 gcgcagttcgccggagtggacgcctacggcctgatcaagatgatcgccgaggcggcgcag 142 Query: 195 acggtccggaggaacagagccacctgcctgcagctcgcgcgccgcgccaggatgatcggg 254 ||||| ||| | ||||| || || ||||||||||||||||| ||| || ||||||||| Sbjct: 143 acggtgcggcgcaacagggcgacgtgcctgcagctcgcgcggcgcctcaagatgatcgga 202 Query: 255 gacctgatgcaccagctccacgccgcgcacctcatgcagcaaccggagacgaggaacccc 314 || || | | |||||||||| ||||| || |||||||| ||||||||||||||||| Sbjct: 203 gatcttctcaagcagctccacggtgcgcagctgatgcagcagccggagacgaggaacccg 262 Query: 315 atggagcagctggaggagacgctccggcgcgcgctgtcgctcgtcaggtcctgccagcgc 374 |||||||||||||||||||||||||||| ||| ||||||| |||| |||||| || Sbjct: 263 gtggagcagctggaggagacgctccggcgagcgtacctgctcgtccggtcatgccagggc 322 Query: 375 cgcgggtacctctaccggtgcttcatgggggcgcggcacgccgacgagctccgcgaggtg 434 || | ||| | ||||| ||||||||||| | |||||||||||||||||| | || ||| Sbjct: 323 cggagctacgtgtaccgctgcttcatgggaggccggcacgccgacgagctcagggaagtg 382 Query: 435 cagggtgagatcaccttctacctccagcttttccctctcctcagctacgtcga 487 ||| |||||||| |||||||||||||||| ||||||||| ||||||| ||||| Sbjct: 383 cagagtgagatcgccttctacctccagctcttccctctcgtcagctatgtcga 435 Score = 54.0 bits (27), Expect = 0.002 Identities = 30/31 (96%) Strand = Plus / Plus Query: 568 aggcacctgtggtaagaccatattttgtgcc 598 |||||||| |||||||||||||||||||||| Sbjct: 489 aggcacctttggtaagaccatattttgtgcc 519
>gb|AC134924.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBb0076M06, complete sequence Length = 133581 Score = 264 bits (133), Expect = 9e-67 Identities = 298/353 (84%) Strand = Plus / Plus Query: 135 gcgcagtttgcaggagtggacgcctacgggctcatcaagatgatcgccgacgcggcgcag 194 |||||||| || ||||||||||||||||| || ||||||||||||||||| ||||||||| Sbjct: 93269 gcgcagttcgccggagtggacgcctacggcctgatcaagatgatcgccgaggcggcgcag 93328 Query: 195 acggtccggaggaacagagccacctgcctgcagctcgcgcgccgcgccaggatgatcggg 254 ||||| ||| | ||||| || || ||||||||||||||||| ||| || ||||||||| Sbjct: 93329 acggtgcggcgcaacagggcgacgtgcctgcagctcgcgcggcgcctcaagatgatcgga 93388 Query: 255 gacctgatgcaccagctccacgccgcgcacctcatgcagcaaccggagacgaggaacccc 314 || || | | |||||||||| ||||| || |||||||| ||||||||||||||||| Sbjct: 93389 gatcttctcaagcagctccacggtgcgcagctgatgcagcagccggagacgaggaacccg 93448 Query: 315 atggagcagctggaggagacgctccggcgcgcgctgtcgctcgtcaggtcctgccagcgc 374 |||||||||||||||||||||||||||| ||| ||||||| |||| |||||| || Sbjct: 93449 gtggagcagctggaggagacgctccggcgagcgtacctgctcgtccggtcatgccagggc 93508 Query: 375 cgcgggtacctctaccggtgcttcatgggggcgcggcacgccgacgagctccgcgaggtg 434 || | ||| | ||||| ||||||||||| | |||||||||||||||||| | || ||| Sbjct: 93509 cggagctacgtgtaccgctgcttcatgggaggccggcacgccgacgagctcagggaagtg 93568 Query: 435 cagggtgagatcaccttctacctccagcttttccctctcctcagctacgtcga 487 ||| |||||||| |||||||||||||||| ||||||||| ||||||| ||||| Sbjct: 93569 cagagtgagatcgccttctacctccagctcttccctctcgtcagctatgtcga 93621 Score = 79.8 bits (40), Expect = 3e-11 Identities = 73/84 (86%) Strand = Plus / Plus Query: 421 agctccgcgaggtgcagggtgagatcaccttctacctccagcttttccctctcctcagct 480 |||| |||||||||||| |||| |||||||||||||||||||| |||||||| |||||| Sbjct: 16163 agctgcgcgaggtgcagagtgatatcaccttctacctccagctcttccctcttgtcagct 16222 Query: 481 acgtcgacaccaccctcacctggg 504 ||| ||||| |||| ||||||| Sbjct: 16223 tcgttgacacgacccgtacctggg 16246 Score = 60.0 bits (30), Expect = 3e-05 Identities = 36/38 (94%) Strand = Plus / Plus Query: 303 acgaggaaccccatggagcagctggaggagacgctccg 340 ||||||||||| ||||||||||||||||||||||||| Sbjct: 16045 acgaggaacccggtggagcagctggaggagacgctccg 16082 Score = 58.0 bits (29), Expect = 1e-04 Identities = 32/33 (96%) Strand = Plus / Plus Query: 566 acaggcacctgtggtaagaccatattttgtgcc 598 |||||||||| |||||||||||||||||||||| Sbjct: 93946 acaggcacctttggtaagaccatattttgtgcc 93978 Score = 46.1 bits (23), Expect = 0.42 Identities = 41/47 (87%) Strand = Plus / Plus Query: 423 ctccgcgaggtgcagggtgagatcaccttctacctccagcttttccc 469 ||||||||||||||| | |||||| | ||||||||||||| ||||| Sbjct: 87569 ctccgcgaggtgcagagcaagatcagcatctacctccagctcttccc 87615
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11 Length = 28386948 Score = 264 bits (133), Expect = 9e-67 Identities = 298/353 (84%) Strand = Plus / Plus Query: 135 gcgcagtttgcaggagtggacgcctacgggctcatcaagatgatcgccgacgcggcgcag 194 |||||||| || ||||||||||||||||| || ||||||||||||||||| ||||||||| Sbjct: 26291620 gcgcagttcgccggagtggacgcctacggcctgatcaagatgatcgccgaggcggcgcag 26291679 Query: 195 acggtccggaggaacagagccacctgcctgcagctcgcgcgccgcgccaggatgatcggg 254 ||||| ||| | ||||| || || ||||||||||||||||| ||| || ||||||||| Sbjct: 26291680 acggtgcggcgcaacagggcgacgtgcctgcagctcgcgcggcgcctcaagatgatcgga 26291739 Query: 255 gacctgatgcaccagctccacgccgcgcacctcatgcagcaaccggagacgaggaacccc 314 || || | | |||||||||| ||||| || |||||||| ||||||||||||||||| Sbjct: 26291740 gatcttctcaagcagctccacggtgcgcagctgatgcagcagccggagacgaggaacccg 26291799 Query: 315 atggagcagctggaggagacgctccggcgcgcgctgtcgctcgtcaggtcctgccagcgc 374 |||||||||||||||||||||||||||| ||| ||||||| |||| |||||| || Sbjct: 26291800 gtggagcagctggaggagacgctccggcgagcgtacctgctcgtccggtcatgccagggc 26291859 Query: 375 cgcgggtacctctaccggtgcttcatgggggcgcggcacgccgacgagctccgcgaggtg 434 || | ||| | ||||| ||||||||||| | |||||||||||||||||| | || ||| Sbjct: 26291860 cggagctacgtgtaccgctgcttcatgggaggccggcacgccgacgagctcagggaagtg 26291919 Query: 435 cagggtgagatcaccttctacctccagcttttccctctcctcagctacgtcga 487 ||| |||||||| |||||||||||||||| ||||||||| ||||||| ||||| Sbjct: 26291920 cagagtgagatcgccttctacctccagctcttccctctcgtcagctatgtcga 26291972 Score = 79.8 bits (40), Expect = 3e-11 Identities = 73/84 (86%) Strand = Plus / Plus Query: 421 agctccgcgaggtgcagggtgagatcaccttctacctccagcttttccctctcctcagct 480 |||| |||||||||||| |||| |||||||||||||||||||| |||||||| |||||| Sbjct: 26213288 agctgcgcgaggtgcagagtgatatcaccttctacctccagctcttccctcttgtcagct 26213347 Query: 481 acgtcgacaccaccctcacctggg 504 ||| ||||| |||| ||||||| Sbjct: 26213348 tcgttgacacgacccgtacctggg 26213371 Score = 60.0 bits (30), Expect = 3e-05 Identities = 36/38 (94%) Strand = Plus / Plus Query: 303 acgaggaaccccatggagcagctggaggagacgctccg 340 ||||||||||| ||||||||||||||||||||||||| Sbjct: 26213170 acgaggaacccggtggagcagctggaggagacgctccg 26213207 Score = 58.0 bits (29), Expect = 1e-04 Identities = 32/33 (96%) Strand = Plus / Plus Query: 566 acaggcacctgtggtaagaccatattttgtgcc 598 |||||||||| |||||||||||||||||||||| Sbjct: 26292297 acaggcacctttggtaagaccatattttgtgcc 26292329 Score = 46.1 bits (23), Expect = 0.42 Identities = 41/47 (87%) Strand = Plus / Plus Query: 423 ctccgcgaggtgcagggtgagatcaccttctacctccagcttttccc 469 ||||||||||||||| | |||||| | ||||||||||||| ||||| Sbjct: 26285920 ctccgcgaggtgcagagcaagatcagcatctacctccagctcttccc 26285966
>dbj|AK066296.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013059O19, full insert sequence Length = 1830 Score = 264 bits (133), Expect = 9e-67 Identities = 298/353 (84%) Strand = Plus / Plus Query: 135 gcgcagtttgcaggagtggacgcctacgggctcatcaagatgatcgccgacgcggcgcag 194 |||||||| || ||||||||||||||||| || ||||||||||||||||| ||||||||| Sbjct: 84 gcgcagttcgccggagtggacgcctacggcctgatcaagatgatcgccgaggcggcgcag 143 Query: 195 acggtccggaggaacagagccacctgcctgcagctcgcgcgccgcgccaggatgatcggg 254 ||||| ||| | ||||| || || ||||||||||||||||| ||| || ||||||||| Sbjct: 144 acggtgcggcgcaacagggcgacgtgcctgcagctcgcgcggcgcctcaagatgatcgga 203 Query: 255 gacctgatgcaccagctccacgccgcgcacctcatgcagcaaccggagacgaggaacccc 314 || || | | |||||||||| ||||| || |||||||| ||||||||||||||||| Sbjct: 204 gatcttctcaagcagctccacggtgcgcagctgatgcagcagccggagacgaggaacccg 263 Query: 315 atggagcagctggaggagacgctccggcgcgcgctgtcgctcgtcaggtcctgccagcgc 374 |||||||||||||||||||||||||||| ||| ||||||| |||| |||||| || Sbjct: 264 gtggagcagctggaggagacgctccggcgagcgtacctgctcgtccggtcatgccagggc 323 Query: 375 cgcgggtacctctaccggtgcttcatgggggcgcggcacgccgacgagctccgcgaggtg 434 || | ||| | ||||| ||||||||||| | |||||||||||||||||| | || ||| Sbjct: 324 cggagctacgtgtaccgctgcttcatgggaggccggcacgccgacgagctcagggaagtg 383 Query: 435 cagggtgagatcaccttctacctccagcttttccctctcctcagctacgtcga 487 ||| |||||||| |||||||||||||||| ||||||||| ||||||| ||||| Sbjct: 384 cagagtgagatcgccttctacctccagctcttccctctcgtcagctatgtcga 436 Score = 54.0 bits (27), Expect = 0.002 Identities = 30/31 (96%) Strand = Plus / Plus Query: 568 aggcacctgtggtaagaccatattttgtgcc 598 |||||||| |||||||||||||||||||||| Sbjct: 490 aggcacctttggtaagaccatattttgtgcc 520
>emb|CT832795.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI023G16, full insert sequence Length = 993 Score = 248 bits (125), Expect = 6e-62 Identities = 297/353 (84%), Gaps = 1/353 (0%) Strand = Plus / Plus Query: 135 gcgcagtttgcaggagtggacgcctacgggctcatcaagatgatcgccgacgcggcgcag 194 |||||||| || ||||||||||||||||| || ||||||||||||||||| ||||||||| Sbjct: 81 gcgcagttcgccggagtggacgcctacggcctgatcaagatgatcgccgaggcggcgcag 140 Query: 195 acggtccggaggaacagagccacctgcctgcagctcgcgcgccgcgccaggatgatcggg 254 ||||| ||| | ||||| || || ||||||| ||||||||| ||| || ||||||||| Sbjct: 141 acggtgcggcgcaacagggcgacgtgcctgc-gctcgcgcggcgcctcaagatgatcgga 199 Query: 255 gacctgatgcaccagctccacgccgcgcacctcatgcagcaaccggagacgaggaacccc 314 || || | | |||||||||| ||||| || |||||||| ||||||||||||||||| Sbjct: 200 gatcttctcaagcagctccacggtgcgcagctgatgcagcagccggagacgaggaacccg 259 Query: 315 atggagcagctggaggagacgctccggcgcgcgctgtcgctcgtcaggtcctgccagcgc 374 |||||||||||||||||||||||||||| ||| ||||||| |||| |||||| || Sbjct: 260 gtggagcagctggaggagacgctccggcgagcgtacctgctcgtccggtcatgccagggc 319 Query: 375 cgcgggtacctctaccggtgcttcatgggggcgcggcacgccgacgagctccgcgaggtg 434 || | ||| | ||||| ||||||||||| | |||||||||||||||||| | || ||| Sbjct: 320 cggagctacgtgtaccgctgcttcatgggaggccggcacgccgacgagctcagggaagtg 379 Query: 435 cagggtgagatcaccttctacctccagcttttccctctcctcagctacgtcga 487 ||| |||||||| |||||||||||||||| ||||||||| ||||||| ||||| Sbjct: 380 cagagtgagatcgccttctacctccagctcttccctctcgtcagctatgtcga 432 Score = 54.0 bits (27), Expect = 0.002 Identities = 30/31 (96%) Strand = Plus / Plus Query: 568 aggcacctgtggtaagaccatattttgtgcc 598 |||||||| |||||||||||||||||||||| Sbjct: 486 aggcacctttggtaagaccatattttgtgcc 516
>gb|AY104794.1| Zea mays PCO093477 mRNA sequence Length = 1130 Score = 117 bits (59), Expect = 1e-22 Identities = 142/167 (85%), Gaps = 2/167 (1%) Strand = Plus / Plus Query: 323 gctggaggagacgctccggcgcgcgctgtc-gctcgtcaggtcctgccagcgccgcgggt 381 |||||||||||||||||||||||| || | ||| || ||||||||||||| ||||||| Sbjct: 292 gctggaggagacgctccggcgcgc-ctacctgctggtgcggtcctgccagcggcgcgggt 350 Query: 382 acctctaccggtgcttcatgggggcgcggcacgccgacgagctccgcgaggtgcagggtg 441 || | ||| ||| | ||||||||||||||||| ||||||||||||||| ||||||| | Sbjct: 351 acgcgttccgctgcctgatgggggcgcggcacgcggacgagctccgcgagatgcagggcg 410 Query: 442 agatcaccttctacctccagcttttccctctcctcagctacgtcgac 488 ||||| |||||||||| | || ||||| ||| |||||||||||||| Sbjct: 411 agatcggcttctacctcgacctcttccccctcatcagctacgtcgac 457 Score = 44.1 bits (22), Expect = 1.6 Identities = 31/34 (91%) Strand = Plus / Plus Query: 165 ctcatcaagatgatcgccgacgcggcgcagacgg 198 ||||||| ||||||||| || ||||||||||||| Sbjct: 116 ctcatcacgatgatcgcggaggcggcgcagacgg 149
>ref|NM_001074960.1| Oryza sativa (japonica cultivar-group) Os11g0670100 (Os11g0670100) mRNA, complete cds Length = 6366 Score = 79.8 bits (40), Expect = 3e-11 Identities = 73/84 (86%) Strand = Plus / Plus Query: 421 agctccgcgaggtgcagggtgagatcaccttctacctccagcttttccctctcctcagct 480 |||| |||||||||||| |||| |||||||||||||||||||| |||||||| |||||| Sbjct: 326 agctgcgcgaggtgcagagtgatatcaccttctacctccagctcttccctcttgtcagct 385 Query: 481 acgtcgacaccaccctcacctggg 504 ||| ||||| |||| ||||||| Sbjct: 386 tcgttgacacgacccgtacctggg 409 Score = 60.0 bits (30), Expect = 3e-05 Identities = 36/38 (94%) Strand = Plus / Plus Query: 303 acgaggaaccccatggagcagctggaggagacgctccg 340 ||||||||||| ||||||||||||||||||||||||| Sbjct: 208 acgaggaacccggtggagcagctggaggagacgctccg 245
>gb|AC133609.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0002C14, complete sequence Length = 154029 Score = 79.8 bits (40), Expect = 3e-11 Identities = 73/84 (86%) Strand = Plus / Plus Query: 421 agctccgcgaggtgcagggtgagatcaccttctacctccagcttttccctctcctcagct 480 |||| |||||||||||| |||| |||||||||||||||||||| |||||||| |||||| Sbjct: 118403 agctgcgcgaggtgcagagtgatatcaccttctacctccagctcttccctcttgtcagct 118462 Query: 481 acgtcgacaccaccctcacctggg 504 ||| ||||| |||| ||||||| Sbjct: 118463 tcgttgacacgacccgtacctggg 118486 Score = 60.0 bits (30), Expect = 3e-05 Identities = 36/38 (94%) Strand = Plus / Plus Query: 303 acgaggaaccccatggagcagctggaggagacgctccg 340 ||||||||||| ||||||||||||||||||||||||| Sbjct: 118285 acgaggaacccggtggagcagctggaggagacgctccg 118322
>ref|XM_504217.1| Yarrowia lipolytica CLIB122, YALI0E21109g predicted mRNA Length = 1176 Score = 48.1 bits (24), Expect = 0.11 Identities = 24/24 (100%) Strand = Plus / Plus Query: 522 cctgctcctgctcctcaacctact 545 |||||||||||||||||||||||| Sbjct: 139 cctgctcctgctcctcaacctact 162
>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica Length = 4224103 Score = 48.1 bits (24), Expect = 0.11 Identities = 24/24 (100%) Strand = Plus / Minus Query: 522 cctgctcctgctcctcaacctact 545 |||||||||||||||||||||||| Sbjct: 2511605 cctgctcctgctcctcaacctact 2511582
>emb|CT831462.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA124G13, full insert sequence Length = 1960 Score = 46.1 bits (23), Expect = 0.42 Identities = 41/47 (87%) Strand = Plus / Plus Query: 423 ctccgcgaggtgcagggtgagatcaccttctacctccagcttttccc 469 ||||||||||||||| | |||||| | ||||||||||||| ||||| Sbjct: 425 ctccgcgaggtgcagagcaagatcagcatctacctccagctcttccc 471
>gb|AC004629.1| Homo sapiens chromosome 5, BAC clone 87L18 (LBNL H97), complete sequence Length = 116019 Score = 46.1 bits (23), Expect = 0.42 Identities = 23/23 (100%) Strand = Plus / Plus Query: 1203 tgcatgcccccttcacatggtgc 1225 ||||||||||||||||||||||| Sbjct: 109782 tgcatgcccccttcacatggtgc 109804
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 46.1 bits (23), Expect = 0.42 Identities = 23/23 (100%) Strand = Plus / Plus Query: 167 catcaagatgatcgccgacgcgg 189 ||||||||||||||||||||||| Sbjct: 3277219 catcaagatgatcgccgacgcgg 3277241
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 46.1 bits (23), Expect = 0.42 Identities = 23/23 (100%) Strand = Plus / Plus Query: 167 catcaagatgatcgccgacgcgg 189 ||||||||||||||||||||||| Sbjct: 735585 catcaagatgatcgccgacgcgg 735607
>gb|AC106781.2| Homo sapiens chromosome 5 clone RP11-346A9, complete sequence Length = 179284 Score = 46.1 bits (23), Expect = 0.42 Identities = 23/23 (100%) Strand = Plus / Minus Query: 1203 tgcatgcccccttcacatggtgc 1225 ||||||||||||||||||||||| Sbjct: 11238 tgcatgcccccttcacatggtgc 11216
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 46.1 bits (23), Expect = 0.42 Identities = 23/23 (100%) Strand = Plus / Plus Query: 167 catcaagatgatcgccgacgcgg 189 ||||||||||||||||||||||| Sbjct: 544207 catcaagatgatcgccgacgcgg 544229
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 46.1 bits (23), Expect = 0.42 Identities = 23/23 (100%) Strand = Plus / Plus Query: 167 catcaagatgatcgccgacgcgg 189 ||||||||||||||||||||||| Sbjct: 498396 catcaagatgatcgccgacgcgg 498418
>gb|AC145927.3| Gallus gallus BAC clone CH261-29M22 from chromosome unknown, complete sequence Length = 227692 Score = 46.1 bits (23), Expect = 0.42 Identities = 26/27 (96%) Strand = Plus / Plus Query: 1292 tcatctacataaacaaagcttcaacct 1318 |||||||||||||||||||||| |||| Sbjct: 197193 tcatctacataaacaaagcttctacct 197219
>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence Length = 3363523 Score = 44.1 bits (22), Expect = 1.6 Identities = 25/26 (96%) Strand = Plus / Plus Query: 164 gctcatcaagatgatcgccgacgcgg 189 |||||| ||||||||||||||||||| Sbjct: 2323658 gctcatgaagatgatcgccgacgcgg 2323683
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 44.1 bits (22), Expect = 1.6 Identities = 22/22 (100%) Strand = Plus / Minus Query: 687 aataattcattttggcaaaatt 708 |||||||||||||||||||||| Sbjct: 25149410 aataattcattttggcaaaatt 25149389
>ref|XM_684855.1| PREDICTED: Danio rerio similar to HBxAg transactivated protein 2 (LOC561451), partial mRNA Length = 3315 Score = 44.1 bits (22), Expect = 1.6 Identities = 25/26 (96%) Strand = Plus / Plus Query: 313 ccatggagcagctggaggagacgctc 338 |||||||||||| ||||||||||||| Sbjct: 2258 ccatggagcagccggaggagacgctc 2283
>gb|AF329639.1|AF329639 Drosophila virilis hairy 5' cis-regulatory region sequence Length = 7119 Score = 44.1 bits (22), Expect = 1.6 Identities = 25/26 (96%) Strand = Plus / Minus Query: 1143 aggcgcagtcgcagtcgcactcgcag 1168 ||||||||||||||||||| |||||| Sbjct: 3487 aggcgcagtcgcagtcgcagtcgcag 3462
>emb|AL731638.3|OSJN00283 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0116K07, complete sequence Length = 130779 Score = 44.1 bits (22), Expect = 1.6 Identities = 22/22 (100%) Strand = Plus / Minus Query: 687 aataattcattttggcaaaatt 708 |||||||||||||||||||||| Sbjct: 31077 aataattcattttggcaaaatt 31056
>gb|AY111044.1| Zea mays CL38592_1 mRNA sequence Length = 606 Score = 44.1 bits (22), Expect = 1.6 Identities = 22/22 (100%) Strand = Plus / Plus Query: 29 cgtcctcctcctcctcttggga 50 |||||||||||||||||||||| Sbjct: 487 cgtcctcctcctcctcttggga 508
>emb|AL606604.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0014K14, complete sequence Length = 150187 Score = 44.1 bits (22), Expect = 1.6 Identities = 22/22 (100%) Strand = Plus / Minus Query: 687 aataattcattttggcaaaatt 708 |||||||||||||||||||||| Sbjct: 96837 aataattcattttggcaaaatt 96816
>emb|AL583887.9| Mouse DNA sequence from clone RP23-121M7 on chromosome 15, complete sequence Length = 220050 Score = 44.1 bits (22), Expect = 1.6 Identities = 28/30 (93%) Strand = Plus / Plus Query: 448 ccttctacctccagcttttccctctcctca 477 |||||| ||||||||||||||| ||||||| Sbjct: 168421 ccttctgcctccagcttttcccactcctca 168450
>emb|AM238664.1| Streptomyces ambofaciens ATCC 23877 right chromosomal arm Length = 1367119 Score = 42.1 bits (21), Expect = 6.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 485 cgacaccaccctcacctgggt 505 ||||||||||||||||||||| Sbjct: 1315285 cgacaccaccctcacctgggt 1315305
>gb|CP000458.1| Burkholderia cenocepacia HI2424 chromosome 1, complete genome Length = 3483902 Score = 42.1 bits (21), Expect = 6.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 167 catcaagatgatcgccgacgc 187 ||||||||||||||||||||| Sbjct: 3120395 catcaagatgatcgccgacgc 3120375
>gb|CP000440.1| Burkholderia cepacia AMMD chromosome 1, complete sequence Length = 3556545 Score = 42.1 bits (21), Expect = 6.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 167 catcaagatgatcgccgacgc 187 ||||||||||||||||||||| Sbjct: 3178114 catcaagatgatcgccgacgc 3178094
>emb|CT573213.2| Frankia alni str. ACN14A chromosome, complete sequence Length = 7497934 Score = 42.1 bits (21), Expect = 6.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 178 tcgccgacgcggcgcagacgg 198 ||||||||||||||||||||| Sbjct: 3146424 tcgccgacgcggcgcagacgg 3146404
>ref|XM_001058700.1| PREDICTED: Rattus norvegicus hypothetical protein LOC681852 (LOC681852), mRNA Length = 348 Score = 42.1 bits (21), Expect = 6.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 29 cgtcctcctcctcctcttggg 49 ||||||||||||||||||||| Sbjct: 85 cgtcctcctcctcctcttggg 65
>gb|AC188111.1| Pongo pygmaeus abelii chromosome UNK clone CH276-78H12, complete sequence Length = 193610 Score = 42.1 bits (21), Expect = 6.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1323 tttctgaagaataggaggtga 1343 ||||||||||||||||||||| Sbjct: 139683 tttctgaagaataggaggtga 139703
>gb|CP000378.1| Burkholderia cenocepacia AU 1054 chromosome 1, complete sequence Length = 3294563 Score = 42.1 bits (21), Expect = 6.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 167 catcaagatgatcgccgacgc 187 ||||||||||||||||||||| Sbjct: 2436037 catcaagatgatcgccgacgc 2436017
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 42.1 bits (21), Expect = 6.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 167 catcaagatgatcgccgacgc 187 ||||||||||||||||||||| Sbjct: 345417 catcaagatgatcgccgacgc 345437
>gb|AC169385.2| Mus musculus BAC clone RP23-247C1 from chromosome 16, complete sequence Length = 206814 Score = 42.1 bits (21), Expect = 6.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1286 cctctctcatctacataaaca 1306 ||||||||||||||||||||| Sbjct: 135771 cctctctcatctacataaaca 135791
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 42.1 bits (21), Expect = 6.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 167 catcaagatgatcgccgacgc 187 ||||||||||||||||||||| Sbjct: 3297775 catcaagatgatcgccgacgc 3297755
>gb|AC132098.4| Mus musculus BAC clone RP24-401I1 from chromosome 18, complete sequence Length = 154520 Score = 42.1 bits (21), Expect = 6.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 552 aaagaggcacaggcacaggca 572 ||||||||||||||||||||| Sbjct: 139621 aaagaggcacaggcacaggca 139601
>gb|AC134570.5| Mus musculus BAC clone RP24-252B18 from chromosome 18, complete sequence Length = 183551 Score = 42.1 bits (21), Expect = 6.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 549 tgcaaagaggcacaggcacaggcac 573 |||||| |||||||||||||||||| Sbjct: 23462 tgcaaacaggcacaggcacaggcac 23438
>gb|AC126255.3| Mus musculus BAC clone RP24-218F22 from chromosome 18, complete sequence Length = 166367 Score = 42.1 bits (21), Expect = 6.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 549 tgcaaagaggcacaggcacaggcac 573 |||||| |||||||||||||||||| Sbjct: 156001 tgcaaacaggcacaggcacaggcac 155977
>gb|AC095558.10| Rattus norvegicus 18 BAC CH230-8D7 (Children's Hospital Oakland Research Institute) complete sequence Length = 226956 Score = 42.1 bits (21), Expect = 6.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 559 cacaggcacaggcacctgtgg 579 ||||||||||||||||||||| Sbjct: 219254 cacaggcacaggcacctgtgg 219274
>gb|AC091517.10| Homo sapiens 12 BAC RP11-777M1 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 172346 Score = 42.1 bits (21), Expect = 6.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 675 ttctcttcttgtaataattca 695 ||||||||||||||||||||| Sbjct: 101159 ttctcttcttgtaataattca 101139
>emb|CR376860.38| Zebrafish DNA sequence from clone DKEY-111H22 in linkage group 8, complete sequence Length = 195545 Score = 42.1 bits (21), Expect = 6.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1517 agctacagatttacataaact 1537 ||||||||||||||||||||| Sbjct: 32815 agctacagatttacataaact 32795
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7 Length = 29644043 Score = 42.1 bits (21), Expect = 6.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 554 agaggcacaggcacaggcacc 574 ||||||||||||||||||||| Sbjct: 24698457 agaggcacaggcacaggcacc 24698437
>emb|AL592402.12| Human DNA sequence from clone RP11-554K11 on chromosome 1 Contains a processed pseudogene similar to ribosomal protein L31 (RPL31), complete sequence Length = 200461 Score = 42.1 bits (21), Expect = 6.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1323 tttctgaagaataggaggtga 1343 ||||||||||||||||||||| Sbjct: 86623 tttctgaagaataggaggtga 86603
>ref|XM_688139.1| PREDICTED: Danio rerio similar to Jmjd2al protein (LOC564809), mRNA Length = 3789 Score = 42.1 bits (21), Expect = 6.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 522 cctgctcctgctcctcaacct 542 ||||||||||||||||||||| Sbjct: 838 cctgctcctgctcctcaacct 818
>gb|AC154606.2| Mus musculus BAC clone RP23-252E10 from chromosome 16, complete sequence Length = 181697 Score = 42.1 bits (21), Expect = 6.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1286 cctctctcatctacataaaca 1306 ||||||||||||||||||||| Sbjct: 36629 cctctctcatctacataaaca 36649
>gb|AC160932.3| Mus musculus BAC clone RP24-275L14 from chromosome 12, complete sequence Length = 177886 Score = 42.1 bits (21), Expect = 6.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1400 cagagcagatagaaaattaga 1420 ||||||||||||||||||||| Sbjct: 32154 cagagcagatagaaaattaga 32134
>gb|AC154474.2| Mus musculus BAC clone RP24-122P10 from chromosome 16, complete sequence Length = 223585 Score = 42.1 bits (21), Expect = 6.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1386 aatgatccaggcttcagagca 1406 ||||||||||||||||||||| Sbjct: 86811 aatgatccaggcttcagagca 86831
>emb|BX784028.13| Zebrafish DNA sequence from clone DKEY-40C11 in linkage group 5, complete sequence Length = 230525 Score = 42.1 bits (21), Expect = 6.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 522 cctgctcctgctcctcaacct 542 ||||||||||||||||||||| Sbjct: 142278 cctgctcctgctcctcaacct 142258
>dbj|AP005175.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0040H10 Length = 132919 Score = 42.1 bits (21), Expect = 6.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 554 agaggcacaggcacaggcacc 574 ||||||||||||||||||||| Sbjct: 54394 agaggcacaggcacaggcacc 54374
>ref|XM_950841.1| Neurospora crassa OR74A hypothetical protein (NCU05007.1) partial mRNA Length = 2001 Score = 42.1 bits (21), Expect = 6.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 456 ctccagcttttccctctcctc 476 ||||||||||||||||||||| Sbjct: 1326 ctccagcttttccctctcctc 1306
>emb|BX842598.1| Neurospora crassa DNA linkage group II BAC clone B8L10 Length = 73541 Score = 42.1 bits (21), Expect = 6.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 456 ctccagcttttccctctcctc 476 ||||||||||||||||||||| Sbjct: 46647 ctccagcttttccctctcctc 46667
>gb|AY110926.1| Zea mays CL2322_1 mRNA sequence Length = 1495 Score = 42.1 bits (21), Expect = 6.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 24 acgtacgtcctcctcctcctc 44 ||||||||||||||||||||| Sbjct: 64 acgtacgtcctcctcctcctc 44
>gb|AC116763.11| Mus musculus chromosome 5, clone RP23-385G21, complete sequence Length = 196521 Score = 42.1 bits (21), Expect = 6.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1474 cttctgatcccaaagaaaccc 1494 ||||||||||||||||||||| Sbjct: 124510 cttctgatcccaaagaaaccc 124530
>gb|AC151409.2| Mus musculus BAC clone RP24-541K8 from 18, complete sequence Length = 179265 Score = 42.1 bits (21), Expect = 6.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 552 aaagaggcacaggcacaggca 572 ||||||||||||||||||||| Sbjct: 34816 aaagaggcacaggcacaggca 34796
>emb|AL627228.31| Mouse DNA sequence from clone RP23-137L22 on chromosome 4, complete sequence Length = 193813 Score = 42.1 bits (21), Expect = 6.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1042 ttgtgtattattgtttgtttg 1062 ||||||||||||||||||||| Sbjct: 21090 ttgtgtattattgtttgtttg 21110
>gb|U04434.1|ZMFHT Zea mays flavanone 3-beta-hydroxylase (fht) mRNA, complete cds Length = 1523 Score = 42.1 bits (21), Expect = 6.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 24 acgtacgtcctcctcctcctc 44 ||||||||||||||||||||| Sbjct: 64 acgtacgtcctcctcctcctc 44 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 311,247,082 Number of extensions: 18795358 Number of successful extensions: 750663 Number of sequences better than 10.0: 57 Number of HSP's gapped: 750649 Number of HSP's successfully gapped: 72 Length of query: 1706 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1683 Effective length of database: 18,503,978,556 Effective search space: 31142195909748 Effective search space used: 31142195909748 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)