ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf5b23 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001056889.1| Oryza sativa (japonica cultivar-group) Os03g0412300 (Os03g0412300) mRNA, complete cds Length = 1220 Score = 111 bits (56), Expect = 6e-21 Identities = 131/156 (83%) Strand = Plus / Plus Query: 153 cttgagtgcgaccgatgctacaagaagatcagaaaggtcctctgcaagcttcaagacaga 212 ||||| || ||| ||||||||| ||||||||||| ||||||||||||||| ||||| | Sbjct: 216 cttgaatgtgacagatgctacaggaagatcagaagggtcctctgcaagctccaagataag 275 Query: 213 gaaaacatcaagatgatctcgtacgacgagaagagcaacacggtgacggtatccggctcc 272 | | ||||||| ||||||||||||||||||| ||||||||||||||| | || | Sbjct: 276 gcgagcatcaaggccatctcgtacgacgagaagaacaacacggtgacggtggcggggccg 335 Query: 273 ttcgacgccgaggaggtcgccgacaggctctgctcc 308 ||||||||||| |||||| | ||||||||||||||| Sbjct: 336 ttcgacgccgacgaggtctcggacaggctctgctcc 371 Score = 50.1 bits (25), Expect = 0.018 Identities = 31/33 (93%) Strand = Plus / Plus Query: 761 gcaggcgatggcctcgccgtccatctggccggc 793 |||||||| |||| ||||||||||||||||||| Sbjct: 734 gcaggcgacggccacgccgtccatctggccggc 766 Score = 48.1 bits (24), Expect = 0.073 Identities = 30/32 (93%) Strand = Plus / Plus Query: 918 ccgtaccagccgcagtactacgaggaggagcc 949 ||||||||||||| ||||||||| |||||||| Sbjct: 873 ccgtaccagccgccgtactacgacgaggagcc 904
>dbj|AK071008.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023080E10, full insert sequence Length = 1218 Score = 111 bits (56), Expect = 6e-21 Identities = 131/156 (83%) Strand = Plus / Plus Query: 153 cttgagtgcgaccgatgctacaagaagatcagaaaggtcctctgcaagcttcaagacaga 212 ||||| || ||| ||||||||| ||||||||||| ||||||||||||||| ||||| | Sbjct: 217 cttgaatgtgacagatgctacaggaagatcagaagggtcctctgcaagctccaagataag 276 Query: 213 gaaaacatcaagatgatctcgtacgacgagaagagcaacacggtgacggtatccggctcc 272 | | ||||||| ||||||||||||||||||| ||||||||||||||| | || | Sbjct: 277 gcgagcatcaaggccatctcgtacgacgagaagaacaacacggtgacggtggcggggccg 336 Query: 273 ttcgacgccgaggaggtcgccgacaggctctgctcc 308 ||||||||||| |||||| | ||||||||||||||| Sbjct: 337 ttcgacgccgacgaggtctcggacaggctctgctcc 372 Score = 50.1 bits (25), Expect = 0.018 Identities = 31/33 (93%) Strand = Plus / Plus Query: 761 gcaggcgatggcctcgccgtccatctggccggc 793 |||||||| |||| ||||||||||||||||||| Sbjct: 735 gcaggcgacggccacgccgtccatctggccggc 767 Score = 48.1 bits (24), Expect = 0.073 Identities = 30/32 (93%) Strand = Plus / Plus Query: 918 ccgtaccagccgcagtactacgaggaggagcc 949 ||||||||||||| ||||||||| |||||||| Sbjct: 871 ccgtaccagccgccgtactacgacgaggagcc 902
>gb|AC120529.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0039N21, complete sequence Length = 151732 Score = 81.8 bits (41), Expect = 5e-12 Identities = 71/81 (87%) Strand = Plus / Plus Query: 228 atctcgtacgacgagaagagcaacacggtgacggtatccggctccttcgacgccgaggag 287 ||||||||||||||||||| ||||||||||||||| | || | ||||||||||| ||| Sbjct: 3499 atctcgtacgacgagaagaacaacacggtgacggtggcggggccgttcgacgccgacgag 3558 Query: 288 gtcgccgacaggctctgctcc 308 ||| | ||||||||||||||| Sbjct: 3559 gtctcggacaggctctgctcc 3579 Score = 61.9 bits (31), Expect = 5e-06 Identities = 49/55 (89%) Strand = Plus / Plus Query: 153 cttgagtgcgaccgatgctacaagaagatcagaaaggtcctctgcaagcttcaag 207 ||||| || ||| ||||||||| ||||||||||| ||||||||||||||| |||| Sbjct: 3350 cttgaatgtgacagatgctacaggaagatcagaagggtcctctgcaagctccaag 3404 Score = 50.1 bits (25), Expect = 0.018 Identities = 31/33 (93%) Strand = Plus / Plus Query: 761 gcaggcgatggcctcgccgtccatctggccggc 793 |||||||| |||| ||||||||||||||||||| Sbjct: 3942 gcaggcgacggccacgccgtccatctggccggc 3974 Score = 48.1 bits (24), Expect = 0.073 Identities = 30/32 (93%) Strand = Plus / Plus Query: 918 ccgtaccagccgcagtactacgaggaggagcc 949 ||||||||||||| ||||||||| |||||||| Sbjct: 4141 ccgtaccagccgccgtactacgacgaggagcc 4172
>gb|AC092262.6| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1212_C05 map C12819S, complete sequence Length = 113266 Score = 81.8 bits (41), Expect = 5e-12 Identities = 71/81 (87%) Strand = Plus / Plus Query: 228 atctcgtacgacgagaagagcaacacggtgacggtatccggctccttcgacgccgaggag 287 ||||||||||||||||||| ||||||||||||||| | || | ||||||||||| ||| Sbjct: 98345 atctcgtacgacgagaagaacaacacggtgacggtggcggggccgttcgacgccgacgag 98404 Query: 288 gtcgccgacaggctctgctcc 308 ||| | ||||||||||||||| Sbjct: 98405 gtctcggacaggctctgctcc 98425 Score = 61.9 bits (31), Expect = 5e-06 Identities = 49/55 (89%) Strand = Plus / Plus Query: 153 cttgagtgcgaccgatgctacaagaagatcagaaaggtcctctgcaagcttcaag 207 ||||| || ||| ||||||||| ||||||||||| ||||||||||||||| |||| Sbjct: 98196 cttgaatgtgacagatgctacaggaagatcagaagggtcctctgcaagctccaag 98250 Score = 50.1 bits (25), Expect = 0.018 Identities = 31/33 (93%) Strand = Plus / Plus Query: 761 gcaggcgatggcctcgccgtccatctggccggc 793 |||||||| |||| ||||||||||||||||||| Sbjct: 98788 gcaggcgacggccacgccgtccatctggccggc 98820 Score = 48.1 bits (24), Expect = 0.073 Identities = 30/32 (93%) Strand = Plus / Plus Query: 918 ccgtaccagccgcagtactacgaggaggagcc 949 ||||||||||||| ||||||||| |||||||| Sbjct: 98927 ccgtaccagccgccgtactacgacgaggagcc 98958
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 81.8 bits (41), Expect = 5e-12 Identities = 71/81 (87%) Strand = Plus / Plus Query: 228 atctcgtacgacgagaagagcaacacggtgacggtatccggctccttcgacgccgaggag 287 ||||||||||||||||||| ||||||||||||||| | || | ||||||||||| ||| Sbjct: 16854128 atctcgtacgacgagaagaacaacacggtgacggtggcggggccgttcgacgccgacgag 16854187 Query: 288 gtcgccgacaggctctgctcc 308 ||| | ||||||||||||||| Sbjct: 16854188 gtctcggacaggctctgctcc 16854208 Score = 61.9 bits (31), Expect = 5e-06 Identities = 49/55 (89%) Strand = Plus / Plus Query: 153 cttgagtgcgaccgatgctacaagaagatcagaaaggtcctctgcaagcttcaag 207 ||||| || ||| ||||||||| ||||||||||| ||||||||||||||| |||| Sbjct: 16853979 cttgaatgtgacagatgctacaggaagatcagaagggtcctctgcaagctccaag 16854033 Score = 50.1 bits (25), Expect = 0.018 Identities = 31/33 (93%) Strand = Plus / Plus Query: 761 gcaggcgatggcctcgccgtccatctggccggc 793 |||||||| |||| ||||||||||||||||||| Sbjct: 16854571 gcaggcgacggccacgccgtccatctggccggc 16854603 Score = 48.1 bits (24), Expect = 0.073 Identities = 30/32 (93%) Strand = Plus / Plus Query: 918 ccgtaccagccgcagtactacgaggaggagcc 949 ||||||||||||| ||||||||| |||||||| Sbjct: 16854710 ccgtaccagccgccgtactacgacgaggagcc 16854741
>ref|NM_001066767.1| Oryza sativa (japonica cultivar-group) Os07g0606900 (Os07g0606900) mRNA, complete cds Length = 927 Score = 75.8 bits (38), Expect = 3e-10 Identities = 110/134 (82%) Strand = Plus / Plus Query: 150 gaccttgagtgcgaccgatgctacaagaagatcagaaaggtcctctgcaagcttcaagac 209 ||||| || ||||| |||||||||||||||||||||| ||||| |||| | | ||||| Sbjct: 37 gacctcgaatgcgatcgatgctacaagaagatcagaagagtcctttgcaggatccaagat 96 Query: 210 agagaaaacatcaagatgatctcgtacgacgagaagagcaacacggtgacggtatccggc 269 | | |||||||||| |||||||||||||||||||| ||| |||||| ||| || || Sbjct: 97 aaggcgaacatcaagacgatctcgtacgacgagaagaacaatgcggtgatggtgtcgggg 156 Query: 270 tccttcgacgccga 283 | ||||||||||| Sbjct: 157 ccgttcgacgccga 170
>dbj|AK242051.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J075122G11, full insert sequence Length = 1329 Score = 56.0 bits (28), Expect = 3e-04 Identities = 58/68 (85%) Strand = Plus / Plus Query: 216 aacatcaagatgatctcgtacgacgagaagagcaacacggtgacggtatccggctccttc 275 |||||||||| |||||||||||||||||||| ||| |||||| ||| || || | ||| Sbjct: 210 aacatcaagacgatctcgtacgacgagaagaacaatgcggtgatggtgtcggggccgttc 269 Query: 276 gacgccga 283 |||||||| Sbjct: 270 gacgccga 277
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7 Length = 29644043 Score = 56.0 bits (28), Expect = 3e-04 Identities = 58/68 (85%) Strand = Plus / Minus Query: 216 aacatcaagatgatctcgtacgacgagaagagcaacacggtgacggtatccggctccttc 275 |||||||||| |||||||||||||||||||| ||| |||||| ||| || || | ||| Sbjct: 24881898 aacatcaagacgatctcgtacgacgagaagaacaatgcggtgatggtgtcggggccgttc 24881839 Query: 276 gacgccga 283 |||||||| Sbjct: 24881838 gacgccga 24881831 Score = 50.1 bits (25), Expect = 0.018 Identities = 34/37 (91%) Strand = Plus / Minus Query: 150 gaccttgagtgcgaccgatgctacaagaagatcagaa 186 ||||| || ||||| |||||||||||||||||||||| Sbjct: 24882261 gacctcgaatgcgatcgatgctacaagaagatcagaa 24882225
>dbj|AP006458.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0072I06 Length = 162411 Score = 56.0 bits (28), Expect = 3e-04 Identities = 58/68 (85%) Strand = Plus / Minus Query: 216 aacatcaagatgatctcgtacgacgagaagagcaacacggtgacggtatccggctccttc 275 |||||||||| |||||||||||||||||||| ||| |||||| ||| || || | ||| Sbjct: 65530 aacatcaagacgatctcgtacgacgagaagaacaatgcggtgatggtgtcggggccgttc 65471 Query: 276 gacgccga 283 |||||||| Sbjct: 65470 gacgccga 65463 Score = 50.1 bits (25), Expect = 0.018 Identities = 34/37 (91%) Strand = Plus / Minus Query: 150 gaccttgagtgcgaccgatgctacaagaagatcagaa 186 ||||| || ||||| |||||||||||||||||||||| Sbjct: 65893 gacctcgaatgcgatcgatgctacaagaagatcagaa 65857
>dbj|AP005193.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0493C06 Length = 158923 Score = 56.0 bits (28), Expect = 3e-04 Identities = 58/68 (85%) Strand = Plus / Minus Query: 216 aacatcaagatgatctcgtacgacgagaagagcaacacggtgacggtatccggctccttc 275 |||||||||| |||||||||||||||||||| ||| |||||| ||| || || | ||| Sbjct: 116349 aacatcaagacgatctcgtacgacgagaagaacaatgcggtgatggtgtcggggccgttc 116290 Query: 276 gacgccga 283 |||||||| Sbjct: 116289 gacgccga 116282 Score = 50.1 bits (25), Expect = 0.018 Identities = 34/37 (91%) Strand = Plus / Minus Query: 150 gaccttgagtgcgaccgatgctacaagaagatcagaa 186 ||||| || ||||| |||||||||||||||||||||| Sbjct: 116712 gacctcgaatgcgatcgatgctacaagaagatcagaa 116676
>gb|AY106105.1| Zea mays PCO074990 mRNA sequence Length = 833 Score = 50.1 bits (25), Expect = 0.018 Identities = 45/51 (88%), Gaps = 3/51 (5%) Strand = Plus / Minus Query: 929 gcagtactacgaggag---gagcctagcgctgggtgcagcgtcatgtgatg 976 ||||||||||||||| ||||| ||||||| |||||||||||||||||| Sbjct: 726 gcagtactacgaggactaagagcccagcgctgcgtgcagcgtcatgtgatg 676
>gb|AE017347.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 7, complete sequence Length = 1347793 Score = 46.1 bits (23), Expect = 0.29 Identities = 23/23 (100%) Strand = Plus / Plus Query: 16 cttcctcatatcttcttcttcct 38 ||||||||||||||||||||||| Sbjct: 793153 cttcctcatatcttcttcttcct 793175
>gb|AF427791.1| Hordeum vulgare Mla locus, complete sequence Length = 261265 Score = 46.1 bits (23), Expect = 0.29 Identities = 26/27 (96%) Strand = Plus / Minus Query: 1081 acgggtgtatatagacgtactttagag 1107 |||| |||||||||||||||||||||| Sbjct: 143284 acggatgtatatagacgtactttagag 143258
>emb|AL020994.1|HS929C8 Human DNA sequence from clone CTA-929C8 on chromosome 22q12.1-12.3, complete sequence Length = 139190 Score = 46.1 bits (23), Expect = 0.29 Identities = 23/23 (100%) Strand = Plus / Minus Query: 32 tcttcctcctgccccctccctct 54 ||||||||||||||||||||||| Sbjct: 46181 tcttcctcctgccccctccctct 46159
>ref|NM_001069735.1| Oryza sativa (japonica cultivar-group) Os09g0420900 (Os09g0420900) mRNA, complete cds Length = 2504 Score = 44.1 bits (22), Expect = 1.1 Identities = 28/30 (93%) Strand = Plus / Minus Query: 26 tcttcttcttcctcctgccccctccctctc 55 |||||||||||||||| | ||||||||||| Sbjct: 334 tcttcttcttcctcctcctccctccctctc 305
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Plus Query: 490 gaatcgatcggcgcggccacca 511 |||||||||||||||||||||| Sbjct: 1563001 gaatcgatcggcgcggccacca 1563022 Score = 44.1 bits (22), Expect = 1.1 Identities = 34/38 (89%) Strand = Plus / Minus Query: 736 cggcgcccagcatgacgatgatgtcgcaggcgatggcc 773 |||||| | |||||||| ||||| |||||||||||||| Sbjct: 1967290 cggcgcacggcatgacgctgatggcgcaggcgatggcc 1967253
>gb|AY294226.1| Uncultured bacterium cosmid gbiox603r, complete sequence Length = 40150 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Plus Query: 692 gccggcgtccttgatggccatg 713 |||||||||||||||||||||| Sbjct: 991 gccggcgtccttgatggccatg 1012
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9 Length = 22696651 Score = 44.1 bits (22), Expect = 1.1 Identities = 28/30 (93%) Strand = Plus / Plus Query: 26 tcttcttcttcctcctgccccctccctctc 55 |||||||||||||||| | ||||||||||| Sbjct: 15113814 tcttcttcttcctcctcctccctccctctc 15113843
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 44.1 bits (22), Expect = 1.1 Identities = 25/26 (96%) Strand = Plus / Plus Query: 30 cttcttcctcctgccccctccctctc 55 |||||||||||| ||||||||||||| Sbjct: 29223498 cttcttcctcctcccccctccctctc 29223523
>gb|AF355468.1|AF355468 Saccharopolyspora spinosa DTDP-glucose 4,6-dehydratase (gdh) and DTDP-4-dehydrorhamnose reductase (kre) genes, complete cds Length = 2311 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Plus Query: 275 cgacgccgaggaggtcgccgac 296 |||||||||||||||||||||| Sbjct: 1199 cgacgccgaggaggtcgccgac 1220
>dbj|AP003023.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0684B02 Length = 132470 Score = 44.1 bits (22), Expect = 1.1 Identities = 25/26 (96%) Strand = Plus / Plus Query: 30 cttcttcctcctgccccctccctctc 55 |||||||||||| ||||||||||||| Sbjct: 69285 cttcttcctcctcccccctccctctc 69310
>dbj|AP003381.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0692C11 Length = 169562 Score = 44.1 bits (22), Expect = 1.1 Identities = 25/26 (96%) Strand = Plus / Plus Query: 30 cttcttcctcctgccccctccctctc 55 |||||||||||| ||||||||||||| Sbjct: 2361 cttcttcctcctcccccctccctctc 2386
>dbj|AP005579.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1740_D06 Length = 187410 Score = 44.1 bits (22), Expect = 1.1 Identities = 28/30 (93%) Strand = Plus / Plus Query: 26 tcttcttcttcctcctgccccctccctctc 55 |||||||||||||||| | ||||||||||| Sbjct: 7790 tcttcttcttcctcctcctccctccctctc 7819
>dbj|AP005426.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0668D04 Length = 148848 Score = 44.1 bits (22), Expect = 1.1 Identities = 28/30 (93%) Strand = Plus / Plus Query: 26 tcttcttcttcctcctgccccctccctctc 55 |||||||||||||||| | ||||||||||| Sbjct: 105457 tcttcttcttcctcctcctccctccctctc 105486
>dbj|BS000045.1| Pan troglodytes chromosome 22 clone:RP43-179P23, map 22, complete sequences Length = 179114 Score = 44.1 bits (22), Expect = 1.1 Identities = 25/26 (96%) Strand = Plus / Plus Query: 28 ttcttcttcctcctgccccctccctc 53 |||||||||||||| ||||||||||| Sbjct: 122586 ttcttcttcctcctcccccctccctc 122611
>dbj|AK065475.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013024N13, full insert sequence Length = 2505 Score = 44.1 bits (22), Expect = 1.1 Identities = 28/30 (93%) Strand = Plus / Minus Query: 26 tcttcttcttcctcctgccccctccctctc 55 |||||||||||||||| | ||||||||||| Sbjct: 335 tcttcttcttcctcctcctccctccctctc 306
>gb|AC154266.2| Mus musculus BAC clone RP24-321J24 from 13, complete sequence Length = 183555 Score = 44.1 bits (22), Expect = 1.1 Identities = 28/30 (93%) Strand = Plus / Minus Query: 26 tcttcttcttcctcctgccccctccctctc 55 |||||||||||||||| | ||||||||||| Sbjct: 75794 tcttcttcttcctcctcctccctccctctc 75765
>gb|AC186674.2| Mus musculus BAC clone RP23-156H1 from chromosome 13, complete sequence Length = 203642 Score = 42.1 bits (21), Expect = 4.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 26 tcttcttcttcctcctgccccctcc 50 |||||||||||||||||| |||||| Sbjct: 162608 tcttcttcttcctcctgctccctcc 162584
>gb|AC192334.1| Mus musculus BAC clone RP23-239E13 from chromosome 13, complete sequence Length = 198176 Score = 42.1 bits (21), Expect = 4.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 26 tcttcttcttcctcctgccccctcc 50 |||||||||||||||||| |||||| Sbjct: 132589 tcttcttcttcctcctgctccctcc 132565
>gb|CP000463.1| Rhodopseudomonas palustris BisA53, complete genome Length = 5505494 Score = 42.1 bits (21), Expect = 4.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 238 acgagaagagcaacacggtgacggt 262 |||||||||||||||||||| |||| Sbjct: 5263757 acgagaagagcaacacggtgtcggt 5263781
>gb|DQ893432.1| Synthetic construct Homo sapiens clone FLH199521.01X; RZPDo839G0582D BRRN1 mRNA, complete sequence Length = 2226 Score = 42.1 bits (21), Expect = 4.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 172 acaagaagatcagaaaggtcctctg 196 ||||||| ||||||||||||||||| Sbjct: 2210 acaagaacatcagaaaggtcctctg 2186
>gb|AE014298.4| Drosophila melanogaster chromosome X, complete sequence Length = 22422827 Score = 42.1 bits (21), Expect = 4.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 588 cacgggcaaggacatggacacggacacgg 616 ||||| |||||||| |||||||||||||| Sbjct: 14222001 cacggacaaggacacggacacggacacgg 14221973
>gb|AC183267.3| Mus musculus BAC clone RP23-122B24 from chromosome 13, complete sequence Length = 201786 Score = 42.1 bits (21), Expect = 4.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 26 tcttcttcttcctcctgccccctcc 50 |||||||||||||||||| |||||| Sbjct: 38682 tcttcttcttcctcctgctccctcc 38706
>ref|XM_001058566.1| PREDICTED: Rattus norvegicus hypothetical protein LOC680722 (LOC680722), mRNA Length = 764 Score = 42.1 bits (21), Expect = 4.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 671 tgaggctccgcgcgcccagcagccg 695 |||||||||||||||||||| |||| Sbjct: 152 tgaggctccgcgcgcccagcggccg 128
>gb|CP000362.1| Roseobacter denitrificans OCh 114, complete genome Length = 4133097 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 737 ggcgcccagcatgacgatgat 757 ||||||||||||||||||||| Sbjct: 2975101 ggcgcccagcatgacgatgat 2975121
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 438 ggcaagccggagaagagcaag 458 ||||||||||||||||||||| Sbjct: 2304476 ggcaagccggagaagagcaag 2304456
>emb|CT737399.2| Pan troglodytes chromosome X clone CH251-213G08 map Xq28, complete sequence Length = 144757 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 32 tcttcctcctgccccctccct 52 ||||||||||||||||||||| Sbjct: 24925 tcttcctcctgccccctccct 24945
>gb|AC111115.13| Mus musculus chromosome 5, clone RP23-213H20, complete sequence Length = 201694 Score = 42.1 bits (21), Expect = 4.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 25 atcttcttcttcctcctgccccctccctc 53 |||||| |||||||||| ||||||||||| Sbjct: 43677 atcttcctcttcctcctaccccctccctc 43649
>gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, complete sequence Length = 384518 Score = 42.1 bits (21), Expect = 4.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 274 tcgacgccgaggaggtcgccgacag 298 |||||||||||||||||| |||||| Sbjct: 354525 tcgacgccgaggaggtcgacgacag 354549
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 779 gtccatctggccggccgcccc 799 ||||||||||||||||||||| Sbjct: 2493831 gtccatctggccggccgcccc 2493811
>gb|AC022342.3| Drosophila melanogaster clone BACR33N21, complete sequence Length = 179839 Score = 42.1 bits (21), Expect = 4.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 588 cacgggcaaggacatggacacggacacgg 616 ||||| |||||||| |||||||||||||| Sbjct: 8226 cacggacaaggacacggacacggacacgg 8198
>gb|AC121094.8| Mus musculus chromosome 18, clone RP24-322I3, complete sequence Length = 164629 Score = 42.1 bits (21), Expect = 4.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 588 cacgggcaaggacatggacacggacacgg 616 ||||| || |||||||||||||||||||| Sbjct: 116091 cacggacacggacatggacacggacacgg 116119
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 779 gtccatctggccggccgcccc 799 ||||||||||||||||||||| Sbjct: 3690862 gtccatctggccggccgcccc 3690882
>gb|AC135914.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0074P11, complete sequence Length = 148753 Score = 42.1 bits (21), Expect = 4.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 30 cttcttcctcctgccccctccctct 54 |||||||||||| |||||||||||| Sbjct: 4501 cttcttcctcctcccccctccctct 4525
>gb|AC104705.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1008_D08, complete sequence Length = 94286 Score = 42.1 bits (21), Expect = 4.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 30 cttcttcctcctgccccctccctct 54 |||||||||||| |||||||||||| Sbjct: 77808 cttcttcctcctcccccctccctct 77832
>gb|AC099651.4| Homo sapiens BAC clone RP11-685B22 from 7, complete sequence Length = 120985 Score = 42.1 bits (21), Expect = 4.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1074 tatatacacgggtgtatatagacgt 1098 |||||||||| |||||||||||||| Sbjct: 54696 tatatacacgcgtgtatatagacgt 54720
>dbj|AK022109.1| Homo sapiens cDNA FLJ12047 fis, clone HEMBB1001983 Length = 2841 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1024 tagttactgccttactgggaa 1044 ||||||||||||||||||||| Sbjct: 1953 tagttactgccttactgggaa 1973
>gb|AC144560.3| Homo sapiens X BAC RP13-507I23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 68529 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 32 tcttcctcctgccccctccct 52 ||||||||||||||||||||| Sbjct: 5217 tcttcctcctgccccctccct 5237
>gb|AC084864.4| Homo sapiens chromosome 7 clone RP11-738B7, complete sequence Length = 176562 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1024 tagttactgccttactgggaa 1044 ||||||||||||||||||||| Sbjct: 44619 tagttactgccttactgggaa 44639
>emb|CT010434.8| Mouse DNA sequence from clone RP23-225H9 on chromosome 17, complete sequence Length = 218000 Score = 42.1 bits (21), Expect = 4.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 588 cacgggcaaggacatggacacggacacgg 616 |||||||| ||||| |||||||||||||| Sbjct: 6451 cacgggcacggacacggacacggacacgg 6423
>emb|AL606632.5| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0042L16, complete sequence Length = 163738 Score = 42.1 bits (21), Expect = 4.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 397 aggagggccacggccacggcctcca 421 |||||| |||||||||||||||||| Sbjct: 54722 aggaggtccacggccacggcctcca 54746
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5 Length = 29737217 Score = 42.1 bits (21), Expect = 4.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 30 cttcttcctcctgccccctccctct 54 |||||||||||| |||||||||||| Sbjct: 6773547 cttcttcctcctcccccctccctct 6773571
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 42.1 bits (21), Expect = 4.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 397 aggagggccacggccacggcctcca 421 |||||| |||||||||||||||||| Sbjct: 21241248 aggaggtccacggccacggcctcca 21241272
>gb|AC021504.5|AC021504 Homo sapiens chromosome 18, clone RP11-164M8, complete sequence Length = 177068 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 211 gagaaaacatcaagatgatct 231 ||||||||||||||||||||| Sbjct: 25311 gagaaaacatcaagatgatct 25291
>emb|BX572601.1| Rhodopseudomonas palustris CGA009 complete genome; segment 9/16 Length = 348580 Score = 42.1 bits (21), Expect = 4.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 692 gccggcgtccttgatggccatggcg 716 |||||||||||||||| |||||||| Sbjct: 266493 gccggcgtccttgatgcccatggcg 266469
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 779 gtccatctggccggccgcccc 799 ||||||||||||||||||||| Sbjct: 3432004 gtccatctggccggccgcccc 3432024
>emb|AL939128.1|SCO939128 Streptomyces coelicolor A3(2) complete genome; segment 25/29 Length = 296500 Score = 42.1 bits (21), Expect = 4.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 588 cacgggcaaggacatggacacggacacgg 616 |||||||| ||||| |||||||||||||| Sbjct: 76197 cacgggcacggacagggacacggacacgg 76225
>emb|AL832511.1|HSM803819 Homo sapiens genomic DNA; cDNA DKFZp667C131 (from clone DKFZp667C131) Length = 3366 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1024 tagttactgccttactgggaa 1044 ||||||||||||||||||||| Sbjct: 2633 tagttactgccttactgggaa 2653
>gb|AC078846.2|AC078846 Homo sapiens chromosome 7 clone RP11-448A19, complete sequence Length = 219428 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1024 tagttactgccttactgggaa 1044 ||||||||||||||||||||| Sbjct: 205852 tagttactgccttactgggaa 205872
>gb|AC154304.1| Mus musculus BAC clone RP24-491H15 from 16, complete sequence Length = 169500 Score = 42.1 bits (21), Expect = 4.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 588 cacgggcaaggacatggacacggacacgg 616 |||||||| ||||| |||||||||||||| Sbjct: 95741 cacgggcacggacacggacacggacacgg 95713
>gb|BC024211.2| Homo sapiens non-SMC condensin I complex, subunit H, mRNA (cDNA clone MGC:4616 IMAGE:3504782), complete cds Length = 2802 Score = 42.1 bits (21), Expect = 4.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 172 acaagaagatcagaaaggtcctctg 196 ||||||| ||||||||||||||||| Sbjct: 2253 acaagaacatcagaaaggtcctctg 2229
>emb|AL807832.6| Mouse DNA sequence from clone RP23-198D21 on chromosome 2, complete sequence Length = 192480 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 26 tcttcttcttcctcctgcccc 46 ||||||||||||||||||||| Sbjct: 10267 tcttcttcttcctcctgcccc 10287
>emb|AL772137.8| Mouse DNA sequence from clone RP23-229A22 on chromosome 4, complete sequence Length = 165975 Score = 42.1 bits (21), Expect = 4.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 26 tcttcttcttcctcctgccccctcc 50 |||||||||||||||| |||||||| Sbjct: 90953 tcttcttcttcctcctcccccctcc 90929
>gb|AC173345.2| Mus musculus BAC clone RP23-174A9 from chromosome 13, complete sequence Length = 217089 Score = 42.1 bits (21), Expect = 4.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 26 tcttcttcttcctcctgccccctcc 50 |||||||||||||||||| |||||| Sbjct: 46241 tcttcttcttcctcctgctccctcc 46217
>emb|AL596104.24| Mouse DNA sequence from clone RP23-326P8 on chromosome 11, complete sequence Length = 164530 Score = 42.1 bits (21), Expect = 4.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 588 cacgggcaaggacatggacacggacacgg 616 ||||| |||||||| |||||||||||||| Sbjct: 116221 cacggacaaggacacggacacggacacgg 116249
>gb|AC167977.3| Mus musculus BAC clone RP23-80B14 from chromosome 13, complete sequence Length = 237646 Score = 42.1 bits (21), Expect = 4.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 26 tcttcttcttcctcctgccccctcc 50 |||||||||||||||||| |||||| Sbjct: 154652 tcttcttcttcctcctgctccctcc 154676
>gb|U13883.1|PUFFC4 Bradysia hygida PC4-1 mRNA, complete cds Length = 1455 Score = 42.1 bits (21), Expect = 4.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 588 cacgggcaaggacatggacacggacacgg 616 ||||| || |||||||||||||||||||| Sbjct: 268 cacggacatggacatggacacggacacgg 296
>emb|AL627307.18| Mouse DNA sequence from clone RP23-258J11 on chromosome 4, complete sequence Length = 108542 Score = 42.1 bits (21), Expect = 4.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 26 tcttcttcttcctcctgccccctcc 50 |||||||||||||||| |||||||| Sbjct: 32591 tcttcttcttcctcctcccccctcc 32615 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 147,228,904 Number of extensions: 8805157 Number of successful extensions: 206072 Number of sequences better than 10.0: 68 Number of HSP's gapped: 206062 Number of HSP's successfully gapped: 87 Length of query: 1187 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1164 Effective length of database: 18,503,978,556 Effective search space: 21538631039184 Effective search space used: 21538631039184 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
