| Clone Name | FLbaf2e19 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001049201.1| Oryza sativa (japonica cultivar-group) Os01g0264800 (Os01g0264800) mRNA, complete cds Length = 588 Score = 559 bits (282), Expect = e-156 Identities = 450/506 (88%) Strand = Plus / Plus Query: 111 tggcgcccgcctccggacgctgagacggtggacgcgctgccctacatcgacggggactac 170 |||||| |||| |||||||| ||| | |||||||||||||||||||||||||| |||||| Sbjct: 70 tggcgcgcgccgccggacgcggaggccgtggacgcgctgccctacatcgacggcgactac 129 Query: 171 ggcgacccggcggtgaagcgcgaggttgaccgcctcgtcgaggaggagatgcgccgcgct 230 |||||||||||||||||||| ||||| ||||| | || |||||||||||||| |||| Sbjct: 130 ggcgacccggcggtgaagcgggaggtggaccggatggtggaggaggagatgcggcgcggg 189 Query: 231 caccgcaagcccgccgacttcctccgcgacctgcccccctatcccatcattggatttgag 290 |||||||||||||||||||||||||||||| |||||| ||| ||| || || ||| Sbjct: 190 agccgcaagcccgccgacttcctccgcgacctcccccccgtccccgccatcgggttcgag 249 Query: 291 aatcatcctatgcttgcaaaagagtacgaacgtgttagagctggcaagccacctgctacc 350 ||||||||||||||||| ||||||||||| |||||||||||||| || || ||||||||| Sbjct: 250 aatcatcctatgcttgctaaagagtacgagcgtgttagagctgggaaacctcctgctacc 309 Query: 351 atagagatgtcccgctatggtttggagccacccccagcgaacaagaggaatgatgttgtt 410 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 310 atagagatgtcccgctatggtttggagccacccccagcgaacaagaggaatgatgttgct 369 Query: 411 gcttggaagcaggctttacggaatgcccagagccagctgcagcatcaaattgtacggatt 470 || |||| ||||||| || | ||||| |||||||||||||| |||||||| || |||| Sbjct: 370 gcatggaggcaggctctaagaaatgctcagagccagctgcaccatcaaatcataaggata 429 Query: 471 gagaatctggagcttatgctgaagcacggtgttgaggtttggaagctccagaacagaaaa 530 |||||||||||||||||||||||| | |||||||||||||||||||| ||||| ||| || Sbjct: 430 gagaatctggagcttatgctgaagtatggtgttgaggtttggaagcttcagaatagacaa 489 Query: 531 atggaatcagttttgtctaggacgcaaaaaatgacactggaatacaatgaaaagatagaa 590 |||||||||||||||||||||| |||||| ||| | | ||||||||||| ||||||||| Sbjct: 490 atggaatcagttttgtctaggatgcaaaagatggctgtcgaatacaatgagaagatagaa 549 Query: 591 actgtcaaccgtgagaggaaatttca 616 ||||||||||| |||||||||||||| Sbjct: 550 actgtcaaccgcgagaggaaatttca 575
>gb|BT017076.1| Zea mays clone EL01N0360A02.c mRNA sequence Length = 1082 Score = 523 bits (264), Expect = e-145 Identities = 537/628 (85%) Strand = Plus / Plus Query: 141 gacgcgctgccctacatcgacggggactacggcgacccggcggtgaagcgcgaggttgac 200 ||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||| || Sbjct: 199 gacgcgctgccctacatcgacggcgactacggcgatgcggcggtgaagcgggaggtcgat 258 Query: 201 cgcctcgtcgaggaggagatgcgccgcgctcaccgcaagcccgccgacttcctccgcgac 260 |||||||||||||||||||||||||| | | |||||||| || ||||||||||| ||| Sbjct: 259 cgcctcgtcgaggaggagatgcgccgagggaagcgcaagcctgcagacttcctccgggac 318 Query: 261 ctgcccccctatcccatcattggatttgagaatcatcctatgcttgcaaaagagtacgaa 320 |||||||| ||||| | ||||| |||||||||||||||||||| ||||| || ||| Sbjct: 319 ctgccccctgttcccaccgccggattcgagaatcatcctatgcttgctaaagaatatgaa 378 Query: 321 cgtgttagagctggcaagccacctgctaccatagagatgtcccgctatggtttggagcca 380 |||||||| |||||||| || ||| || |||| ||||| |||||||||||||||||| Sbjct: 379 cgtgttagggctggcaaacctccttttatgctagatatgtctcgctatggtttggagcca 438 Query: 381 cccccagcgaacaagaggaatgatgttgttgcttggaagcaggctttacggaatgcccag 440 || ||| |||||||||||||||||||| ||||||| ||||||| |||||||||| ||| Sbjct: 439 cctccaatgaacaagaggaatgatgttggcgcttggaggcaggctctacggaatgctcag 498 Query: 441 agccagctgcagcatcaaattgtacggattgagaatctggagcttatgctgaagcacggt 500 |||||| |||||||||||||| || |||| |||||||| |||||||||||||| | || Sbjct: 499 agccagttgcagcatcaaattataaggatagagaatctcgagcttatgctgaaatatggc 558 Query: 501 gttgaggtttggaagctccagaacagaaaaatggaatcagttttgtctaggacgcaaaaa 560 || || ||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct: 559 gtagatgtttggaagctccagaacagacaaatggaatcagttctgtctaggatgcaaaag 618 Query: 561 atgacactggaatacaatgaaaagatagaaactgtcaaccgtgagaggaaatttcatcag 620 ||| | | ||||||||||||| |||||||| |||||| || |||||||| || || ||| Sbjct: 619 atggctgtagaatacaatgaaaggatagaaaatgtcaatcgagagaggaagttccaccag 678 Query: 621 caaaacaccggtggacaactccacgccttgacagtagaatggcaggaactgtgtcagaaa 680 ||||| || || ||||| || || ||| ||| | | ||||||||||| |||||||| ||| Sbjct: 679 caaaatactggaggacagctgcatgccctgaaaatggaatggcaggagctgtgtcaaaaa 738 Query: 681 aacatagctattcaagctgcgtgtgttgatctgcagaatcaaattgatcagcttaaactg 740 || ||||||||||| ||||| |||||||| ||||||||||| ||||| ||||||||||| Sbjct: 739 aatatagctattcaggctgcttgtgttgacctgcagaatcatattgaccagcttaaactt 798 Query: 741 gaagctaaagaacagggaatgccaatgg 768 ||||| ||||||| ||||||||| |||| Sbjct: 799 gaagcaaaagaactgggaatgcccatgg 826
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 238 bits (120), Expect = 4e-59 Identities = 159/172 (92%) Strand = Plus / Plus Query: 289 agaatcatcctatgcttgcaaaagagtacgaacgtgttagagctggcaagccacctgcta 348 ||||||||||||||||||| ||||||||||| |||||||||||||| || || ||||||| Sbjct: 9013545 agaatcatcctatgcttgctaaagagtacgagcgtgttagagctgggaaacctcctgcta 9013604 Query: 349 ccatagagatgtcccgctatggtttggagccacccccagcgaacaagaggaatgatgttg 408 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9013605 ccatagagatgtcccgctatggtttggagccacccccagcgaacaagaggaatgatgttg 9013664 Query: 409 ttgcttggaagcaggctttacggaatgcccagagccagctgcagcatcaaat 460 ||| |||| ||||||| || | ||||| |||||||||||||| |||||||| Sbjct: 9013665 ctgcatggaggcaggctctaagaaatgctcagagccagctgcaccatcaaat 9013716 Score = 172 bits (87), Expect = 2e-39 Identities = 141/159 (88%) Strand = Plus / Plus Query: 111 tggcgcccgcctccggacgctgagacggtggacgcgctgccctacatcgacggggactac 170 |||||| |||| |||||||| ||| | |||||||||||||||||||||||||| |||||| Sbjct: 9012138 tggcgcgcgccgccggacgcggaggccgtggacgcgctgccctacatcgacggcgactac 9012197 Query: 171 ggcgacccggcggtgaagcgcgaggttgaccgcctcgtcgaggaggagatgcgccgcgct 230 |||||||||||||||||||| ||||| ||||| | || |||||||||||||| |||| Sbjct: 9012198 ggcgacccggcggtgaagcgggaggtggaccggatggtggaggaggagatgcggcgcggg 9012257 Query: 231 caccgcaagcccgccgacttcctccgcgacctgcccccc 269 |||||||||||||||||||||||||||||| |||||| Sbjct: 9012258 agccgcaagcccgccgacttcctccgcgacctccccccc 9012296 Score = 168 bits (85), Expect = 3e-38 Identities = 124/137 (90%) Strand = Plus / Plus Query: 616 atcagcaaaacaccggtggacaactccacgccttgacagtagaatggcaggaactgtgtc 675 ||||||||||||| ||||| |||||||| |||||||| ||||||||||| ||||||| Sbjct: 9014899 atcagcaaaacactggtggtcaactccatgccttgacgacggaatggcaggagctgtgtc 9014958 Query: 676 agaaaaacatagctattcaagctgcgtgtgttgatctgcagaatcaaattgatcagctta 735 ||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||| Sbjct: 9014959 agaaaaatatagctattcaagctgcatgtgttgatctgcagaatcagattgatcagctta 9015018 Query: 736 aactggaagctaaagaa 752 |||| | |||||||||| Sbjct: 9015019 aacttggagctaaagaa 9015035 Score = 123 bits (62), Expect = 1e-24 Identities = 80/86 (93%) Strand = Plus / Plus Query: 466 ggattgagaatctggagcttatgctgaagcacggtgttgaggtttggaagctccagaaca 525 |||| |||||||||||||||||||||||| | |||||||||||||||||||| ||||| | Sbjct: 9014341 ggatagagaatctggagcttatgctgaagtatggtgttgaggtttggaagcttcagaata 9014400 Query: 526 gaaaaatggaatcagttttgtctagg 551 || ||||||||||||||||||||||| Sbjct: 9014401 gacaaatggaatcagttttgtctagg 9014426 Score = 77.8 bits (39), Expect = 8e-11 Identities = 45/47 (95%) Strand = Plus / Plus Query: 570 gaatacaatgaaaagatagaaactgtcaaccgtgagaggaaatttca 616 ||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct: 9014776 gaatacaatgagaagatagaaactgtcaaccgcgagaggaaatttca 9014822
>dbj|AP001383.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0453A06 Length = 154378 Score = 238 bits (120), Expect = 4e-59 Identities = 159/172 (92%) Strand = Plus / Plus Query: 289 agaatcatcctatgcttgcaaaagagtacgaacgtgttagagctggcaagccacctgcta 348 ||||||||||||||||||| ||||||||||| |||||||||||||| || || ||||||| Sbjct: 121300 agaatcatcctatgcttgctaaagagtacgagcgtgttagagctgggaaacctcctgcta 121359 Query: 349 ccatagagatgtcccgctatggtttggagccacccccagcgaacaagaggaatgatgttg 408 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121360 ccatagagatgtcccgctatggtttggagccacccccagcgaacaagaggaatgatgttg 121419 Query: 409 ttgcttggaagcaggctttacggaatgcccagagccagctgcagcatcaaat 460 ||| |||| ||||||| || | ||||| |||||||||||||| |||||||| Sbjct: 121420 ctgcatggaggcaggctctaagaaatgctcagagccagctgcaccatcaaat 121471 Score = 172 bits (87), Expect = 2e-39 Identities = 141/159 (88%) Strand = Plus / Plus Query: 111 tggcgcccgcctccggacgctgagacggtggacgcgctgccctacatcgacggggactac 170 |||||| |||| |||||||| ||| | |||||||||||||||||||||||||| |||||| Sbjct: 119893 tggcgcgcgccgccggacgcggaggccgtggacgcgctgccctacatcgacggcgactac 119952 Query: 171 ggcgacccggcggtgaagcgcgaggttgaccgcctcgtcgaggaggagatgcgccgcgct 230 |||||||||||||||||||| ||||| ||||| | || |||||||||||||| |||| Sbjct: 119953 ggcgacccggcggtgaagcgggaggtggaccggatggtggaggaggagatgcggcgcggg 120012 Query: 231 caccgcaagcccgccgacttcctccgcgacctgcccccc 269 |||||||||||||||||||||||||||||| |||||| Sbjct: 120013 agccgcaagcccgccgacttcctccgcgacctccccccc 120051 Score = 168 bits (85), Expect = 3e-38 Identities = 124/137 (90%) Strand = Plus / Plus Query: 616 atcagcaaaacaccggtggacaactccacgccttgacagtagaatggcaggaactgtgtc 675 ||||||||||||| ||||| |||||||| |||||||| ||||||||||| ||||||| Sbjct: 122654 atcagcaaaacactggtggtcaactccatgccttgacgacggaatggcaggagctgtgtc 122713 Query: 676 agaaaaacatagctattcaagctgcgtgtgttgatctgcagaatcaaattgatcagctta 735 ||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||| Sbjct: 122714 agaaaaatatagctattcaagctgcatgtgttgatctgcagaatcagattgatcagctta 122773 Query: 736 aactggaagctaaagaa 752 |||| | |||||||||| Sbjct: 122774 aacttggagctaaagaa 122790 Score = 123 bits (62), Expect = 1e-24 Identities = 80/86 (93%) Strand = Plus / Plus Query: 466 ggattgagaatctggagcttatgctgaagcacggtgttgaggtttggaagctccagaaca 525 |||| |||||||||||||||||||||||| | |||||||||||||||||||| ||||| | Sbjct: 122096 ggatagagaatctggagcttatgctgaagtatggtgttgaggtttggaagcttcagaata 122155 Query: 526 gaaaaatggaatcagttttgtctagg 551 || ||||||||||||||||||||||| Sbjct: 122156 gacaaatggaatcagttttgtctagg 122181 Score = 77.8 bits (39), Expect = 8e-11 Identities = 45/47 (95%) Strand = Plus / Plus Query: 570 gaatacaatgaaaagatagaaactgtcaaccgtgagaggaaatttca 616 ||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct: 122531 gaatacaatgagaagatagaaactgtcaaccgcgagaggaaatttca 122577
>dbj|AP001080.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0499C11 Length = 151369 Score = 238 bits (120), Expect = 4e-59 Identities = 159/172 (92%) Strand = Plus / Plus Query: 289 agaatcatcctatgcttgcaaaagagtacgaacgtgttagagctggcaagccacctgcta 348 ||||||||||||||||||| ||||||||||| |||||||||||||| || || ||||||| Sbjct: 42552 agaatcatcctatgcttgctaaagagtacgagcgtgttagagctgggaaacctcctgcta 42611 Query: 349 ccatagagatgtcccgctatggtttggagccacccccagcgaacaagaggaatgatgttg 408 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 42612 ccatagagatgtcccgctatggtttggagccacccccagcgaacaagaggaatgatgttg 42671 Query: 409 ttgcttggaagcaggctttacggaatgcccagagccagctgcagcatcaaat 460 ||| |||| ||||||| || | ||||| |||||||||||||| |||||||| Sbjct: 42672 ctgcatggaggcaggctctaagaaatgctcagagccagctgcaccatcaaat 42723 Score = 172 bits (87), Expect = 2e-39 Identities = 141/159 (88%) Strand = Plus / Plus Query: 111 tggcgcccgcctccggacgctgagacggtggacgcgctgccctacatcgacggggactac 170 |||||| |||| |||||||| ||| | |||||||||||||||||||||||||| |||||| Sbjct: 41145 tggcgcgcgccgccggacgcggaggccgtggacgcgctgccctacatcgacggcgactac 41204 Query: 171 ggcgacccggcggtgaagcgcgaggttgaccgcctcgtcgaggaggagatgcgccgcgct 230 |||||||||||||||||||| ||||| ||||| | || |||||||||||||| |||| Sbjct: 41205 ggcgacccggcggtgaagcgggaggtggaccggatggtggaggaggagatgcggcgcggg 41264 Query: 231 caccgcaagcccgccgacttcctccgcgacctgcccccc 269 |||||||||||||||||||||||||||||| |||||| Sbjct: 41265 agccgcaagcccgccgacttcctccgcgacctccccccc 41303 Score = 168 bits (85), Expect = 3e-38 Identities = 124/137 (90%) Strand = Plus / Plus Query: 616 atcagcaaaacaccggtggacaactccacgccttgacagtagaatggcaggaactgtgtc 675 ||||||||||||| ||||| |||||||| |||||||| ||||||||||| ||||||| Sbjct: 43906 atcagcaaaacactggtggtcaactccatgccttgacgacggaatggcaggagctgtgtc 43965 Query: 676 agaaaaacatagctattcaagctgcgtgtgttgatctgcagaatcaaattgatcagctta 735 ||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||| Sbjct: 43966 agaaaaatatagctattcaagctgcatgtgttgatctgcagaatcagattgatcagctta 44025 Query: 736 aactggaagctaaagaa 752 |||| | |||||||||| Sbjct: 44026 aacttggagctaaagaa 44042 Score = 123 bits (62), Expect = 1e-24 Identities = 80/86 (93%) Strand = Plus / Plus Query: 466 ggattgagaatctggagcttatgctgaagcacggtgttgaggtttggaagctccagaaca 525 |||| |||||||||||||||||||||||| | |||||||||||||||||||| ||||| | Sbjct: 43348 ggatagagaatctggagcttatgctgaagtatggtgttgaggtttggaagcttcagaata 43407 Query: 526 gaaaaatggaatcagttttgtctagg 551 || ||||||||||||||||||||||| Sbjct: 43408 gacaaatggaatcagttttgtctagg 43433 Score = 77.8 bits (39), Expect = 8e-11 Identities = 45/47 (95%) Strand = Plus / Plus Query: 570 gaatacaatgaaaagatagaaactgtcaaccgtgagaggaaatttca 616 ||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct: 43783 gaatacaatgagaagatagaaactgtcaaccgcgagaggaaatttca 43829
>gb|AY110560.1| Zea mays CL11905_1 mRNA sequence Length = 1065 Score = 210 bits (106), Expect = 8e-51 Identities = 252/303 (83%) Strand = Plus / Minus Query: 466 ggattgagaatctggagcttatgctgaagcacggtgttgaggtttggaagctccagaaca 525 |||| |||||||| |||||||||||||| | || || || ||||||||||||||||||| Sbjct: 636 ggatagagaatctcgagcttatgctgaaatatggcgtagatgtttggaagctccagaaca 577 Query: 526 gaaaaatggaatcagttttgtctaggacgcaaaaaatgacactggaatacaatgaaaaga 585 || |||||||||||||| ||||||||| |||||| ||| | | ||||||||||||| || Sbjct: 576 gacaaatggaatcagttctgtctaggatgcaaaagatggctgtagaatacaatgaaagga 517 Query: 586 tagaaactgtcaaccgtgagaggaaatttcatcagcaaaacaccggtggacaactccacg 645 |||||| |||||| || |||||||| || || |||||||| || || ||||| || || | Sbjct: 516 tagaaaatgtcaatcgagagaggaagttccaccagcaaaatactggaggacagctgcatg 457 Query: 646 ccttgacagtagaatggcaggaactgtgtcagaaaaacatagctattcaagctgcgtgtg 705 || ||| | | ||||||||||| ||||||| ||||||||||| ||||| |||| Sbjct: 456 ccctgaaaatggaatggcaggagctgtgtcnnnnnnntatagctattcaggctgcttgtg 397 Query: 706 ttgatctgcagaatcaaattgatcagcttaaactggaagctaaagaacagggaatgccaa 765 |||| ||||||||||| ||||| ||||||||||| ||||| ||||||| ||||||||| | Sbjct: 396 ttgacctgcagaatcatattgaccagcttaaacttgaagcaaaagaactgggaatgccca 337 Query: 766 tgg 768 ||| Sbjct: 336 tgg 334 Score = 202 bits (102), Expect = 2e-48 Identities = 232/277 (83%) Strand = Plus / Minus Query: 141 gacgcgctgccctacatcgacggggactacggcgacccggcggtgaagcgcgaggttgac 200 ||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||| || Sbjct: 961 gacgcgctgccctacatcgacggcgactacggcgatgcggcggtgaagcgggaggtcgat 902 Query: 201 cgcctcgtcgaggaggagatgcgccgcgctcaccgcaagcccgccgacttcctccgcgac 260 |||||||||||||||||||||||||| | | |||||||| || ||||||||||| ||| Sbjct: 901 cgcctcgtcgaggaggagatgcgccgagggaagcgcaagcctgcagacttcctccgggac 842 Query: 261 ctgcccccctatcccatcattggatttgagaatcatcctatgcttgcaaaagagtacgaa 320 ||| ||||| | ||||| |||||||||||||||||||| ||||| || ||| Sbjct: 841 ctgnnnnntgttcccaccgccggattcgagaatcatcctatgcttgctaaagaatatgaa 782 Query: 321 cgtgttagagctggcaagccacctgctaccatagagatgtcccgctatggtttggagcca 380 |||||||| |||||||| || ||| || |||| ||||| |||||||||||||||||| Sbjct: 781 cgtgttagggctggcaaacctccttttatgctagatatgtctcgctatggtttggagcca 722 Query: 381 cccccagcgaacaagaggaatgatgttgttgcttgga 417 || ||| |||||||||||||||||||| ||||||| Sbjct: 721 cctccaatgaacaagaggaatgatgttggcgcttgga 685
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 48.1 bits (24), Expect = 0.071 Identities = 30/32 (93%) Strand = Plus / Plus Query: 202 gcctcgtcgaggaggagatgcgccgcgctcac 233 |||||||||| ||||||||| ||||||||||| Sbjct: 2003002 gcctcgtcgacgaggagatgtgccgcgctcac 2003033
>gb|AC118213.8| Mus musculus chromosome 1, clone RP24-529B23, complete sequence Length = 133485 Score = 46.1 bits (23), Expect = 0.28 Identities = 23/23 (100%) Strand = Plus / Plus Query: 822 gtaggaaggcagaagctgtgact 844 ||||||||||||||||||||||| Sbjct: 121655 gtaggaaggcagaagctgtgact 121677
>ref|XM_762506.1| Giardia lamblia ATCC 50803 hypothetical protein (GLP_442_21022_14681) partial mRNA Length = 6342 Score = 46.1 bits (23), Expect = 0.28 Identities = 29/31 (93%) Strand = Plus / Minus Query: 517 tccagaacagaaaaatggaatcagttttgtc 547 |||||| || ||||||||||||||||||||| Sbjct: 5523 tccagagcataaaaatggaatcagttttgtc 5493
>gb|AC115893.10| Mus musculus chromosome 1, clone RP24-442I13, complete sequence Length = 153053 Score = 46.1 bits (23), Expect = 0.28 Identities = 23/23 (100%) Strand = Plus / Minus Query: 822 gtaggaaggcagaagctgtgact 844 ||||||||||||||||||||||| Sbjct: 139924 gtaggaaggcagaagctgtgact 139902
>gb|CP000454.1| Arthrobacter sp. FB24, complete genome Length = 4698945 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Minus Query: 113 gcgcccgcctccggacgctgag 134 |||||||||||||||||||||| Sbjct: 1035883 gcgcccgcctccggacgctgag 1035862
>gb|AY686596.1| Apis mellifera Dscam gene, complete cds, alternatively spliced Length = 116066 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1110 tgaatattttgtctatttagtt 1131 |||||||||||||||||||||| Sbjct: 67724 tgaatattttgtctatttagtt 67703
>gb|AE017354.1| Legionella pneumophila subsp. pneumophila str. Philadelphia 1, complete genome Length = 3397754 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Minus Query: 331 ctggcaagccacctgctaccat 352 |||||||||||||||||||||| Sbjct: 1919704 ctggcaagccacctgctaccat 1919683
>gb|AC008074.3| Homo sapiens BAC clone RP11-568N6 from 2, complete sequence Length = 198087 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Minus Query: 524 cagaaaaatggaatcagttttg 545 |||||||||||||||||||||| Sbjct: 67205 cagaaaaatggaatcagttttg 67184
>emb|CR628337.1| Legionella pneumophila str. Lens complete genome Length = 3345687 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Minus Query: 331 ctggcaagccacctgctaccat 352 |||||||||||||||||||||| Sbjct: 1880364 ctggcaagccacctgctaccat 1880343
>emb|CR628336.1| Legionella pneumophila str. Paris complete genome Length = 3503610 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Minus Query: 331 ctggcaagccacctgctaccat 352 |||||||||||||||||||||| Sbjct: 1897697 ctggcaagccacctgctaccat 1897676
>gb|CP000479.1| Mycobacterium avium 104, complete genome Length = 5475491 Score = 42.1 bits (21), Expect = 4.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 152 ctacatcgacggggactacggcgac 176 ||||| ||||||||||||||||||| Sbjct: 3767347 ctacaccgacggggactacggcgac 3767323
>ref|XM_507640.2| PREDICTED: Pan troglodytes F-box only protein, helicase, 18 (FBXO18), mRNA Length = 3774 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 239 gcccgccgacttcctccgcga 259 ||||||||||||||||||||| Sbjct: 438 gcccgccgacttcctccgcga 418
>gb|DQ007884.1| Malus x domestica DELLA protein (RGL2b) mRNA, complete cds Length = 1755 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 939 tatgcaacgtgatggcatgtg 959 ||||||||||||||||||||| Sbjct: 1490 tatgcaacgtgatggcatgtg 1510
>gb|CP000362.1| Roseobacter denitrificans OCh 114, complete genome Length = 4133097 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 30 gcggccgccgtgatggccttg 50 ||||||||||||||||||||| Sbjct: 1248210 gcggccgccgtgatggccttg 1248230
>ref|NM_112699.2| Arabidopsis thaliana unknown protein (AT3G18165) mRNA, complete cds Length = 1118 Score = 42.1 bits (21), Expect = 4.4 Identities = 33/37 (89%) Strand = Plus / Plus Query: 309 aaagagtacgaacgtgttagagctggcaagccacctg 345 |||||||| || |||||||||||||| ||||| |||| Sbjct: 319 aaagagtatgagcgtgttagagctgggaagcctcctg 355
>gb|CP000153.1| Thiomicrospira denitrificans ATCC 33889, complete genome Length = 2201561 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 678 aaaaacatagctattcaagct 698 ||||||||||||||||||||| Sbjct: 1321652 aaaaacatagctattcaagct 1321632
>gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-27, complete genome Length = 5237682 Score = 42.1 bits (21), Expect = 4.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1107 agctgaatattttgtctatttagtt 1131 ||||||||||||||| ||||||||| Sbjct: 714260 agctgaatattttgtatatttagtt 714284
>gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete genome Length = 5227419 Score = 42.1 bits (21), Expect = 4.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1107 agctgaatattttgtctatttagtt 1131 ||||||||||||||| ||||||||| Sbjct: 723368 agctgaatattttgtatatttagtt 723392
>ref|XM_710037.1| Candida albicans SC5314 putative ubiquitin-like protein-specific protease (CaO19.4353), mRNA Length = 1476 Score = 42.1 bits (21), Expect = 4.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 510 tggaagctccagaacagaaaaatgg 534 ||||||||||| ||||||||||||| Sbjct: 1313 tggaagctccacaacagaaaaatgg 1337
>ref|XM_709986.1| Candida albicans SC5314 putative ubiquitin-like protein-specific protease (CaO19.11831), mRNA Length = 1470 Score = 42.1 bits (21), Expect = 4.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 510 tggaagctccagaacagaaaaatgg 534 ||||||||||| ||||||||||||| Sbjct: 1307 tggaagctccacaacagaaaaatgg 1331
>gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome Length = 5228663 Score = 42.1 bits (21), Expect = 4.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1107 agctgaatattttgtctatttagtt 1131 ||||||||||||||| ||||||||| Sbjct: 723263 agctgaatattttgtatatttagtt 723287
>gb|AC109294.8| Mus musculus chromosome 1, clone RP24-236C22, complete sequence Length = 151772 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 827 aaggcagaagctgtgactcca 847 ||||||||||||||||||||| Sbjct: 140093 aaggcagaagctgtgactcca 140073
>gb|AC131804.4| Mus musculus BAC clone RP24-553C6 from chromosome 1, complete sequence Length = 138699 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 827 aaggcagaagctgtgactcca 847 ||||||||||||||||||||| Sbjct: 52082 aaggcagaagctgtgactcca 52062
>gb|CP000001.1| Bacillus cereus E33L, complete genome Length = 5300915 Score = 42.1 bits (21), Expect = 4.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1107 agctgaatattttgtctatttagtt 1131 ||||||||||||||| ||||||||| Sbjct: 713272 agctgaatattttgtatatttagtt 713296
>gb|AC110263.9| Mus musculus chromosome 3, clone RP23-296I12, complete sequence Length = 201908 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 807 atttgagatgcagatgtagga 827 ||||||||||||||||||||| Sbjct: 165921 atttgagatgcagatgtagga 165901
>gb|AY091412.1| Arabidopsis thaliana unknown protein (At3g18165) mRNA, complete cds Length = 793 Score = 42.1 bits (21), Expect = 4.4 Identities = 33/37 (89%) Strand = Plus / Plus Query: 309 aaagagtacgaacgtgttagagctggcaagccacctg 345 |||||||| || |||||||||||||| ||||| |||| Sbjct: 259 aaagagtatgagcgtgttagagctgggaagcctcctg 295
>gb|AY050910.1| Arabidopsis thaliana unknown protein (At3g18165) mRNA, complete cds Length = 1084 Score = 42.1 bits (21), Expect = 4.4 Identities = 33/37 (89%) Strand = Plus / Plus Query: 309 aaagagtacgaacgtgttagagctggcaagccacctg 345 |||||||| || |||||||||||||| ||||| |||| Sbjct: 320 aaagagtatgagcgtgttagagctgggaagcctcctg 356
>emb|AL355580.13| Human DNA sequence from clone RP11-76K10 on chromosome 13 Contains the 3' end of a novel gene, complete sequence Length = 179497 Score = 42.1 bits (21), Expect = 4.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 559 aaatgacactggaatacaatgaaaa 583 |||||| |||||||||||||||||| Sbjct: 123692 aaatgaaactggaatacaatgaaaa 123668
>emb|AL137186.18| Human DNA sequence from clone RP11-536K7 on chromosome 10 Contains the 5' end of a novel gene, the FBXO18 gene for likely ortholog of mouse f-box only protein 18 (FBH1,FLJ14590), the IL15RA gene for interleukin 15 receptor, alpha (IL15RA), the 3' end of the IL2RA gene for interleukin 2 receptor, alpha (CD25,IL2R,TCGFR), two novel genes and two CpG islands, complete sequence Length = 191607 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 239 gcccgccgacttcctccgcga 259 ||||||||||||||||||||| Sbjct: 23931 gcccgccgacttcctccgcga 23911
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 187 agcgcgaggttgaccgcctcg 207 ||||||||||||||||||||| Sbjct: 7010770 agcgcgaggttgaccgcctcg 7010750
>gb|AY088112.1| Arabidopsis thaliana clone 41430 mRNA, complete sequence Length = 1093 Score = 42.1 bits (21), Expect = 4.4 Identities = 33/37 (89%) Strand = Plus / Plus Query: 309 aaagagtacgaacgtgttagagctggcaagccacctg 345 |||||||| || |||||||||||||| ||||| |||| Sbjct: 303 aaagagtatgagcgtgttagagctgggaagcctcctg 339
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 17 tacctgctcgcgcgcggccgc 37 ||||||||||||||||||||| Sbjct: 845102 tacctgctcgcgcgcggccgc 845082
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 42.1 bits (21), Expect = 4.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 12 gcggctacctgctcgcgcgcggccgccgt 40 ||||| |||||||||||| |||||||||| Sbjct: 5381661 gcggccacctgctcgcgctcggccgccgt 5381689
>dbj|AB020749.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MRC8 Length = 76816 Score = 42.1 bits (21), Expect = 4.4 Identities = 33/37 (89%) Strand = Plus / Plus Query: 309 aaagagtacgaacgtgttagagctggcaagccacctg 345 |||||||| || |||||||||||||| ||||| |||| Sbjct: 52937 aaagagtatgagcgtgttagagctgggaagcctcctg 52973
>gb|AC115740.8| Mus musculus chromosome 3, clone RP23-476G18, complete sequence Length = 226125 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 807 atttgagatgcagatgtagga 827 ||||||||||||||||||||| Sbjct: 196894 atttgagatgcagatgtagga 196914
>dbj|AP003783.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-598K3, complete sequence Length = 172763 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1122 ctatttagttctgcttgtttc 1142 ||||||||||||||||||||| Sbjct: 162100 ctatttagttctgcttgtttc 162120
>gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome Length = 5411809 Score = 42.1 bits (21), Expect = 4.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1107 agctgaatattttgtctatttagtt 1131 ||||||||||||||| ||||||||| Sbjct: 698696 agctgaatattttgtatatttagtt 698720
>gb|AE016879.1| Bacillus anthracis str. Ames, complete genome Length = 5227293 Score = 42.1 bits (21), Expect = 4.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1107 agctgaatattttgtctatttagtt 1131 ||||||||||||||| ||||||||| Sbjct: 723367 agctgaatattttgtatatttagtt 723391
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 42.1 bits (21), Expect = 4.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 152 ctacatcgacggggactacggcgac 176 ||||| ||||||||||||||||||| Sbjct: 3187070 ctacaccgacggggactacggcgac 3187046
>gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome Length = 5224283 Score = 42.1 bits (21), Expect = 4.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1107 agctgaatattttgtctatttagtt 1131 ||||||||||||||| ||||||||| Sbjct: 798424 agctgaatattttgtatatttagtt 798448
>emb|AL953839.10| Mouse DNA sequence from clone RP23-325L22 on chromosome 4, complete sequence Length = 80682 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 483 cttatgctgaagcacggtgtt 503 ||||||||||||||||||||| Sbjct: 62326 cttatgctgaagcacggtgtt 62306
>gb|AC131737.3| Mus musculus BAC clone RP23-106E9 from 7, complete sequence Length = 205306 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1013 agagaaagagaaccagaatgt 1033 ||||||||||||||||||||| Sbjct: 58615 agagaaagagaaccagaatgt 58635
>emb|AL732321.18| Mouse DNA sequence from clone RP23-167N17 on chromosome X, complete sequence Length = 216244 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1117 tttgtctatttagttctgctt 1137 ||||||||||||||||||||| Sbjct: 213032 tttgtctatttagttctgctt 213012 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 201,499,633 Number of extensions: 10769162 Number of successful extensions: 213876 Number of sequences better than 10.0: 49 Number of HSP's gapped: 213863 Number of HSP's successfully gapped: 64 Length of query: 1158 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1135 Effective length of database: 18,503,978,556 Effective search space: 21002015661060 Effective search space used: 21002015661060 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)