ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf5b13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Q6P4Y6:IRS1_XENTR Insulin receptor substrate 1 - Xenopus tropica... 32 3.1
2Q60177:PSMA_METJA Proteasome alpha subunit - Methanococcus janna... 30 9.0
3P70661:NGN3_MOUSE Neurogenin-3 - Mus musculus (Mouse) 30 9.0

>Q6P4Y6:IRS1_XENTR Insulin receptor substrate 1 - Xenopus tropicalis (Western clawed|
           frog) (Silurana tropicalis)
          Length = 654
 Score = 32.0 bits (71), Expect = 3.1
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +2

Query: 383 GPCRRPSIEHGAPTYRRLPGGNRSEPSPHASADCRCS 493
           GPCR P+      +YR LP   + EP P A A C  S
Sbjct: 492 GPCRVPA------SYRSLPRSYKMEPQPSARASCSSS 522



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>Q60177:PSMA_METJA Proteasome alpha subunit - Methanococcus jannaschii|
          Length = 261

 Score = 30.4 bits (67), Expect = 9.0
 Identities = 17/57 (29%), Positives = 31/57 (54%)
 Frame = -2

Query: 407 RSTDGGRDRPVGQSLLQPQRRRRVGLDED*PEDLHVLTRARLDVLVQDVDPSLLLLR 237
           ++T  G  RPV   LL+ + R  + LDE     +  LT+A  D+  ++VD  ++ ++
Sbjct: 162 KATAIGSGRPVVMELLEKEYRDDITLDEGLELAITALTKANEDIKPENVDVCIITVK 218



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>P70661:NGN3_MOUSE Neurogenin-3 - Mus musculus (Mouse)|
          Length = 214

 Score = 30.4 bits (67), Expect = 9.0
 Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -2

Query: 479 LPKHVGWARIG-CRREAVGTSERRARSTDGGRDRPVGQSLLQPQRRRR 339
           +P+    A +G CR    GTS R+ R+  GGR+RP  +  L  QRR R
Sbjct: 42  IPRDCSEAEVGDCR----GTS-RKLRARRGGRNRPKSELALSKQRRSR 84


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 139,719,977
Number of extensions: 3118967
Number of successful extensions: 8333
Number of sequences better than 10.0: 3
Number of HSP's gapped: 8330
Number of HSP's successfully gapped: 3
Length of query: 279
Length of database: 100,686,439
Length adjustment: 112
Effective length of query: 167
Effective length of database: 69,965,399
Effective search space: 11684221633
Effective search space used: 11684221633
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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