ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf10c21 |
|---|---|
| Clone Library Name | barley_pub |
>P49379:CBF1_KLULA Centromere-binding protein 1 - Kluyveromyces lactis (Yeast)| (Candida sphaerica) Length = 359 Score = 37.7 bits (86), Expect = 0.15 Identities = 45/171 (26%), Positives = 61/171 (35%), Gaps = 21/171 (12%) Frame = +3 Query: 144 LEAENAHLRKAMPKGVAMNHRGKRGPTFGQLEGDLGGN-----KRKSAHIAGGHVMDDVI 308 L+ E A+ R M + K G + DL + K + G V DD Sbjct: 12 LDVEEANKRHQMVDTLLRGSEDKDGDNDNSVYDDLLQDPEEVEKENKENRDGDKVGDDEH 71 Query: 309 EVSDGEEEGMAVDFNNGESGDEGVPAVQTPSKIAV---------RVVTGKRDV------- 440 +V GE EG A + ++ + DE + PS AV R G D Sbjct: 72 DVVKGESEGQAAEQSSADQNDENINVDVDPSVTAVARAAQHASQRREAGDEDEDEDEEEE 131 Query: 441 ADEIKHVDGGGGQDHGSACCDGNVILDDDDVLIMPRGKKCAARVISDNESE 593 DE HVD A D + +D+D RGKK N+SE Sbjct: 132 EDEDDHVDIDDVDKDPDAVIDEDDDEEDEDQAQRRRGKKNIEGTGESNDSE 182
>Q5X4H4:GATB_LEGPA Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B -| Legionella pneumophila (strain Paris) Length = 477 Score = 36.6 bits (83), Expect = 0.34 Identities = 33/129 (25%), Positives = 52/129 (40%), Gaps = 3/129 (2%) Frame = +3 Query: 135 VSLLEAENAHLRKAMPKGVAMNHRGKRGPTFGQLEGDLGGNKRKSAHIAGGHVMDDV-IE 311 +S+ E +N + +PKG ++ K T G L LG N K+ HIA H+ +D Sbjct: 73 LSVFERKN-YFYPDLPKGYQISQYQKPIVTNGYLNIQLGNNLEKTVHIARAHLEEDAGKS 131 Query: 312 VSDGEEEGMAVDFNNGESGDEGVPAVQTPSKIAVRVVTGKRDVADEIKHVDG--GGGQDH 485 + D + +D N +G + V TP + ++ G G Sbjct: 132 LHDAHTDYTGIDLN--RAGTPLLEIVTTPCLYSAEEAVNYLKTLHQLVRFLGICDGNMQE 189 Query: 486 GSACCDGNV 512 GS CD N+ Sbjct: 190 GSFRCDVNL 198
>Q5WVV9:GATB_LEGPL Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B -| Legionella pneumophila (strain Lens) Length = 477 Score = 36.2 bits (82), Expect = 0.44 Identities = 33/129 (25%), Positives = 52/129 (40%), Gaps = 3/129 (2%) Frame = +3 Query: 135 VSLLEAENAHLRKAMPKGVAMNHRGKRGPTFGQLEGDLGGNKRKSAHIAGGHVMDDV-IE 311 +S+ E +N + +PKG ++ K T G L LG N K+ HIA H+ +D Sbjct: 73 LSVFERKN-YFYPDLPKGYQISQYQKPIVTNGYLNIQLGNNLEKTVHIARAHLEEDAGKS 131 Query: 312 VSDGEEEGMAVDFNNGESGDEGVPAVQTPSKIAVRVVTGKRDVADEIKHVDG--GGGQDH 485 + D + +D N +G + V TP + ++ G G Sbjct: 132 LHDAHTDYTGIDLN--RAGTPLLEIVTTPCLYSAEEAINYLKTLHQLVRFLGICDGNMQE 189 Query: 486 GSACCDGNV 512 GS CD N+ Sbjct: 190 GSFRCDVNL 198
>Q5ZUQ6:GATB_LEGPH Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B -| Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) Length = 477 Score = 36.2 bits (82), Expect = 0.44 Identities = 33/129 (25%), Positives = 52/129 (40%), Gaps = 3/129 (2%) Frame = +3 Query: 135 VSLLEAENAHLRKAMPKGVAMNHRGKRGPTFGQLEGDLGGNKRKSAHIAGGHVMDDV-IE 311 +S+ E +N + +PKG ++ K T G L LG N K+ HIA H+ +D Sbjct: 73 LSVFERKN-YFYPDLPKGYQISQYQKPIVTNGYLNIQLGNNLEKTVHIARAHLEEDAGKS 131 Query: 312 VSDGEEEGMAVDFNNGESGDEGVPAVQTPSKIAVRVVTGKRDVADEIKHVDG--GGGQDH 485 + D + +D N +G + V TP + ++ G G Sbjct: 132 LHDAHTDYTGIDLN--RAGTPLLEIVTTPCLYSAEEAINYLKTLHQLVRFLGICDGNMQE 189 Query: 486 GSACCDGNV 512 GS CD N+ Sbjct: 190 GSFRCDVNL 198
>Q26481:RL5_STYCL 60S ribosomal protein L5 - Styela clava (Sea squirt)| Length = 295 Score = 34.3 bits (77), Expect = 1.7 Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 4/88 (4%) Frame = +3 Query: 165 LRKAMPKGVAMNHRGKRGPTFGQLEGDLGGNKRKSAHIAGGHVMDDVIEVSDGEEEGMAV 344 ++ A G+ + H KR P + GD +S HI GGHV + + E+ + +EE Sbjct: 163 MKGAADGGLDIPHSTKRFPGYDDESGDFSAEVHRS-HIFGGHVSNYMKELEEEDEEAFKR 221 Query: 345 DFN----NGESGDEGVPAVQTPSKIAVR 416 F+ +G + D V + T + A+R Sbjct: 222 QFSQYIKHGVTADT-VEEMYTKAHAAIR 248
>Q5WJ19:GATB_BACSK Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B -| Bacillus clausii (strain KSM-K16) Length = 476 Score = 33.1 bits (74), Expect = 3.7 Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 5/118 (4%) Frame = +3 Query: 180 PKGVAMNHRGKRGPTFGQLEGDLGGNKRKSAHIAGGHVMDDVIEVSDGEEEGMAVDFNNG 359 PK ++ K G +E ++GG K+K I H+ +D +++ G + VD+N Sbjct: 87 PKAYQISQFDKPIGEHGWIEIEVGG-KKKRIGITRLHLEEDAGKLTHGTDGHSLVDYNR- 144 Query: 360 ESGDEGVPAVQTPSKIAVRVVTGKRDVADEIKHVDGGGG-----QDHGSACCDGNVIL 518 +G P V+ S+ +R +++K + G + GS CD N+ L Sbjct: 145 ----QGTPLVEIVSEPDIRTPEEAYAYLEKLKAIIQYTGVSDCKMEEGSLRCDANISL 198
>P06105:SC160_YEAST Protein SCP160 - Saccharomyces cerevisiae (Baker's yeast)| Length = 1222 Score = 32.7 bits (73), Expect = 4.9 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Frame = +3 Query: 264 KSAHIAGGHVMDDVIEVSDGEE-EGMAVDFNNGESGDEGVPAVQTPSKIAVRVV 422 KS +GGH++ ++I + GEE +VD N +S ++ + VQ P K +VV Sbjct: 874 KSIVGSGGHILREIISKAGGEEIRNKSVDIPNADSENKDI-TVQGPQKFVKKVV 926
>Q5R4C9:NRBF2_PONPY Nuclear receptor-binding factor 2 - Pongo pygmaeus (Orangutan)| Length = 287 Score = 32.7 bits (73), Expect = 4.9 Identities = 24/70 (34%), Positives = 35/70 (50%) Frame = +3 Query: 36 PREMGVAEIAKKVDALKAELAAKSSRIADLEARVSLLEAENAHLRKAMPKGVAMNHRGKR 215 P E + A K D K + ++++IADL+ V L AEN LRK + A R + Sbjct: 151 PAEPCIGSKAPKDD--KTIIEEQATKIADLKRHVEFLVAENERLRKENKQLKAEKARLLK 208 Query: 216 GPTFGQLEGD 245 GP +L+ D Sbjct: 209 GPIEKELDVD 218
>Q96F24:NRBF2_HUMAN Nuclear receptor-binding factor 2 - Homo sapiens (Human)| Length = 287 Score = 32.7 bits (73), Expect = 4.9 Identities = 24/70 (34%), Positives = 35/70 (50%) Frame = +3 Query: 36 PREMGVAEIAKKVDALKAELAAKSSRIADLEARVSLLEAENAHLRKAMPKGVAMNHRGKR 215 P E + A K D K + ++++IADL+ V L AEN LRK + A R + Sbjct: 151 PAEPCIGSKAPKDD--KTIIEEQATKIADLKRHVEFLVAENERLRKENKQLKAEKARLLK 208 Query: 216 GPTFGQLEGD 245 GP +L+ D Sbjct: 209 GPIEKELDVD 218
>Q4WTT2:SET2_ASPFU Histone-lysine N-methyltransferase, H3 lysine-36 specific -| Aspergillus fumigatus (Sartorya fumigata) Length = 966 Score = 32.3 bits (72), Expect = 6.3 Identities = 14/44 (31%), Positives = 27/44 (61%) Frame = +3 Query: 249 GGNKRKSAHIAGGHVMDDVIEVSDGEEEGMAVDFNNGESGDEGV 380 GGN + I+G + ++D +++SDGE E + + N+ S +G+ Sbjct: 792 GGNSKADDMISGHNTVEDDVKLSDGEAEKVEENDNSMSSDPQGI 835
>Q06511:RRP15_YEAST Ribosomal RNA-processing protein 15 - Saccharomyces cerevisiae| (Baker's yeast) Length = 250 Score = 32.3 bits (72), Expect = 6.3 Identities = 24/102 (23%), Positives = 45/102 (44%), Gaps = 11/102 (10%) Frame = +3 Query: 960 DDSDCSENSADSVEESSTGPEESDNEETYKDVMDRLRGKRNAKNKDWK---------IEP 1112 + + S+ S+ ++ + EE D+EE D R + +N+K+ D I Sbjct: 52 EQNSSSDESSKIIDNEQSDAEEDDDEEEEDDDFPRKKKSKNSKHDDGSTGFSAAVNAILS 111 Query: 1113 EMLSAFDEYPDLCLKAVCALYRKQTE--EEQAEKATILHNKK 1232 L A+D + + L + ++E E +A+KA + KK Sbjct: 112 SHLKAYDRKDPIMARNKKVLKQSESEKLEYKAKKALLAEKKK 153
>P10962:MAK16_YEAST Protein MAK16 - Saccharomyces cerevisiae (Baker's yeast)| Length = 306 Score = 32.3 bits (72), Expect = 6.3 Identities = 20/58 (34%), Positives = 31/58 (53%) Frame = +3 Query: 942 MEKFIVDDSDCSENSADSVEESSTGPEESDNEETYKDVMDRLRGKRNAKNKDWKIEPE 1115 +EK++ D SD +SA E S +SD++E K+ R + +AK K K+E E Sbjct: 234 LEKWLAD-SDREASSASQSESDSESESDSDSDEENKNSAKRRKKGTSAKTKRPKVEIE 290
>Q08278:MED7_YEAST RNA polymerase II mediator complex subunit 7 - Saccharomyces| cerevisiae (Baker's yeast) Length = 222 Score = 32.0 bits (71), Expect = 8.3 Identities = 19/73 (26%), Positives = 32/73 (43%) Frame = +3 Query: 978 ENSADSVEESSTGPEESDNEETYKDVMDRLRGKRNAKNKDWKIEPEMLSAFDEYPDLCLK 1157 E A S ++++ +EE +D L KN+ ++ + D+ PDL Sbjct: 36 EKKAASAKQTAPNNSNGGSEEEITCALDYLIPPPMPKNQQYRAFGSIWQVKDQLPDLESM 95 Query: 1158 AVCALYRKQTEEE 1196 + LY+K TE E Sbjct: 96 GLTQLYKKSTENE 108
>Q66CI2:LPXK_YERPS Tetraacyldisaccharide 4'-kinase - Yersinia pseudotuberculosis| Length = 328 Score = 32.0 bits (71), Expect = 8.3 Identities = 17/56 (30%), Positives = 28/56 (50%) Frame = +3 Query: 318 DGEEEGMAVDFNNGESGDEGVPAVQTPSKIAVRVVTGKRDVADEIKHVDGGGGQDH 485 +G + NG EG +Q ++ AV +VTG+R A++++HV G H Sbjct: 184 EGRLRSVDAAITNGGLAAEGEIPMQLVAREAVNLVTGQRQPAEQLQHVVAMAGIGH 239
>Q1CGH1:LPXK_YERPN Tetraacyldisaccharide 4'-kinase - Yersinia pestis (biovar Antiqua| strain Nepal516) Length = 328 Score = 32.0 bits (71), Expect = 8.3 Identities = 17/56 (30%), Positives = 28/56 (50%) Frame = +3 Query: 318 DGEEEGMAVDFNNGESGDEGVPAVQTPSKIAVRVVTGKRDVADEIKHVDGGGGQDH 485 +G + NG EG +Q ++ AV +VTG+R A++++HV G H Sbjct: 184 EGRLRSVDAAITNGGLAAEGEIPMQLVAREAVNLVTGQRQPAEQLQHVVAMAGIGH 239
>Q8ZGA8:LPXK_YERPE Tetraacyldisaccharide 4'-kinase - Yersinia pestis| Length = 328 Score = 32.0 bits (71), Expect = 8.3 Identities = 17/56 (30%), Positives = 28/56 (50%) Frame = +3 Query: 318 DGEEEGMAVDFNNGESGDEGVPAVQTPSKIAVRVVTGKRDVADEIKHVDGGGGQDH 485 +G + NG EG +Q ++ AV +VTG+R A++++HV G H Sbjct: 184 EGRLRSVDAAITNGGLAAEGEIPMQLVAREAVNLVTGQRQPAEQLQHVVAMAGIGH 239
>Q1CA67:LPXK_YERPA Tetraacyldisaccharide 4'-kinase - Yersinia pestis (biovar Antiqua| strain Antiqua) Length = 328 Score = 32.0 bits (71), Expect = 8.3 Identities = 17/56 (30%), Positives = 28/56 (50%) Frame = +3 Query: 318 DGEEEGMAVDFNNGESGDEGVPAVQTPSKIAVRVVTGKRDVADEIKHVDGGGGQDH 485 +G + NG EG +Q ++ AV +VTG+R A++++HV G H Sbjct: 184 EGRLRSVDAAITNGGLAAEGEIPMQLVAREAVNLVTGQRQPAEQLQHVVAMAGIGH 239 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 268,040,306 Number of extensions: 5609131 Number of successful extensions: 17194 Number of sequences better than 10.0: 17 Number of HSP's gapped: 17158 Number of HSP's successfully gapped: 17 Length of query: 576 Length of database: 100,686,439 Length adjustment: 119 Effective length of query: 457 Effective length of database: 68,045,334 Effective search space: 31096717638 Effective search space used: 31096717638 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
