ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf4n04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Q0DWQ7:CCB12_ORYSJ Cyclin-B1-2 - Oryza sativa subsp. japonica (R... 183 1e-45
2Q3SZV5:POMP_BOVIN Proteasome maturation protein - Bos taurus (Bo... 49 4e-05
3Q9CQT5:POMP_MOUSE Proteasome maturation protein - Mus musculus (... 47 1e-04
4Q9WUS1:RNAS1_MYOGL Ribonuclease pancreatic precursor - Myoxus gl... 32 7.7

>Q0DWQ7:CCB12_ORYSJ Cyclin-B1-2 - Oryza sativa subsp. japonica (Rice)|
          Length = 391
 Score =  183 bits (465), Expect = 1e-45
 Identities = 84/99 (84%), Positives = 94/99 (94%)
 Frame = +3

Query: 60  ELGETHDVLRFGVNDSVRGDLAPAHPVQAAIHKESKFWDDKKKFGTEAIYGSAFNIRKDL 239
           E+G  HDV+RFGVNDSV+GDLAP HP+QA++HKE+KFW DKK+FG EAIYGSAFNIRKDL
Sbjct: 10  EIGGNHDVVRFGVNDSVKGDLAPPHPLQASVHKEAKFWADKKRFGAEAIYGSAFNIRKDL 69

Query: 240 DAQILSRFQRPPGALPSSMLGYEAMTGSLDDFGFEDYLN 356
           DAQILS+FQRPPGALPSSMLGYEA+TGSLDDFGFEDYLN
Sbjct: 70  DAQILSKFQRPPGALPSSMLGYEALTGSLDDFGFEDYLN 108



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>Q3SZV5:POMP_BOVIN Proteasome maturation protein - Bos taurus (Bovine)|
          Length = 141

 Score = 49.3 bits (116), Expect = 4e-05
 Identities = 33/97 (34%), Positives = 54/97 (55%), Gaps = 1/97 (1%)
 Frame = +3

Query: 69  ETHDVLRFGVNDSVRGDLAPAHPVQAAIHKESKFWDDKKKFGT-EAIYGSAFNIRKDLDA 245
           E+HD+LR G +  V+ +L P+HP++ +  K  +   DK  F T   I G    ++  ++ 
Sbjct: 26  ESHDLLRKGFS-CVKNELLPSHPLELS-EKNFQLNQDKMNFSTLRNIQGLFAPLKLQMEF 83

Query: 246 QILSRFQRPPGALPSSMLGYEAMTGSLDDFGFEDYLN 356
           + + + QR P  LPSS L  + + G+ +  GFED LN
Sbjct: 84  KAVQQVQRLP-FLPSSNLSLDILRGNDETIGFEDILN 119



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>Q9CQT5:POMP_MOUSE Proteasome maturation protein - Mus musculus (Mouse)|
          Length = 141

 Score = 47.4 bits (111), Expect = 1e-04
 Identities = 32/97 (32%), Positives = 53/97 (54%), Gaps = 1/97 (1%)
 Frame = +3

Query: 69  ETHDVLRFGVNDSVRGDLAPAHPVQAAIHKESKFWDDKKKFGT-EAIYGSAFNIRKDLDA 245
           E+HD+LR G +  V+ +L P+HP++ +  K  +   DK  F T   I G    ++  ++ 
Sbjct: 26  ESHDLLRKGFS-CVKNELLPSHPLELS-EKNFQLNQDKMNFSTLRNIQGLFAPLKLQMEF 83

Query: 246 QILSRFQRPPGALPSSMLGYEAMTGSLDDFGFEDYLN 356
           + + +  R P  LPSS L  + + G+ +  GFED LN
Sbjct: 84  KAVQQVHRLP-FLPSSNLSLDILRGNDETIGFEDILN 119



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>Q9WUS1:RNAS1_MYOGL Ribonuclease pancreatic precursor - Myoxus glis (Fat dormouse) (Glis|
            glis)
          Length = 156

 Score = 31.6 bits (70), Expect = 7.7
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +1

Query: 1105 CAYRTCTTGWRFALACPRDPSAPVSIDST 1191
            CAYRT     R  +AC  DPS PV  D +
Sbjct: 123  CAYRTTQKVKRIVVACEGDPSVPVHYDGS 151


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 219,584,554
Number of extensions: 4679018
Number of successful extensions: 11128
Number of sequences better than 10.0: 4
Number of HSP's gapped: 11121
Number of HSP's successfully gapped: 4
Length of query: 437
Length of database: 100,686,439
Length adjustment: 116
Effective length of query: 321
Effective length of database: 68,868,219
Effective search space: 22106698299
Effective search space used: 22106698299
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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