ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | FLbaf1i03 |
|---|---|
| Clone Library Name | barley_pub |
>emb|Z84537.1|HV1328SR H.vulgare BARE-1 long terminal repeat DNA; ID 1328SR Length = 186 Score = 206 bits (104), Expect = 1e-49 Identities = 107/108 (99%) Strand = Plus / Plus Query: 989 atctgttggaattatgccctagaggcaataataaatatagttattattataattcctgta 1048 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 52 atctgttggaattatgccctagaggcaataataaatatagttattattataattcctgta 111 Query: 1049 tcaagataatcgttcattatccatgctataattgtattgaatgaagac 1096 |||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 112 tcaagataatcgtttattatccatgctataattgtattgaatgaagac 159
>gb|AY643843.1|AY643842S2 Hordeum vulgare subsp. vulgare clones BAC 519K7 and 799C8 hardness locus region Length = 129099 Score = 200 bits (101), Expect = 8e-48 Identities = 104/105 (99%) Strand = Plus / Minus Query: 992 tgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatca 1051 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 56940 tgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatca 56881 Query: 1052 agataatcgttcattatccatgctataattgtattgaatgaagac 1096 ||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 56880 agataatcgtttattatccatgctataattgtattgaatgaagac 56836 Score = 163 bits (82), Expect = 2e-36 Identities = 100/106 (94%) Strand = Plus / Minus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 1050 |||||| |||||||||||||||| ||||||||||| |||||||| ||||||||||||||| Sbjct: 49847 ctgttgaaattatgccctagaggaaataataaatacagttattactataattcctgtatc 49788 Query: 1051 aagataatcgttcattatccatgctataattgtattgaatgaagac 1096 |||||||||||| |||||||||||||||||||||||| |||||||| Sbjct: 49787 aagataatcgtttattatccatgctataattgtattgcatgaagac 49742
>gb|AY661558.1| Hordeum vulgare subsp. vulgare eIF4E gene locus, complete sequence Length = 439641 Score = 200 bits (101), Expect = 8e-48 Identities = 104/105 (99%) Strand = Plus / Minus Query: 992 tgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatca 1051 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 52903 tgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatca 52844 Query: 1052 agataatcgttcattatccatgctataattgtattgaatgaagac 1096 ||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 52843 agataatcgtttattatccatgctataattgtattgaatgaagac 52799 Score = 200 bits (101), Expect = 8e-48 Identities = 104/105 (99%) Strand = Plus / Minus Query: 992 tgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatca 1051 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 98456 tgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatca 98397 Query: 1052 agataatcgttcattatccatgctataattgtattgaatgaagac 1096 ||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 98396 agataatcgtttattatccatgctataattgtattgaatgaagac 98352 Score = 194 bits (98), Expect = 5e-46 Identities = 104/106 (98%) Strand = Plus / Minus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 1050 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 91350 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 91291 Query: 1051 aagataatcgttcattatccatgctataattgtattgaatgaagac 1096 ||||| |||||| ||||||||||||||||||||||||||||||||| Sbjct: 91290 aagatcatcgtttattatccatgctataattgtattgaatgaagac 91245 Score = 194 bits (98), Expect = 5e-46 Identities = 104/106 (98%) Strand = Plus / Plus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 1050 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 364484 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 364543 Query: 1051 aagataatcgttcattatccatgctataattgtattgaatgaagac 1096 | |||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 364544 acgataatcgtttattatccatgctataattgtattgaatgaagac 364589 Score = 194 bits (98), Expect = 5e-46 Identities = 104/106 (98%) Strand = Plus / Plus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 1050 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 379671 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 379730 Query: 1051 aagataatcgttcattatccatgctataattgtattgaatgaagac 1096 |||||||||||| |||||||||| |||||||||||||||||||||| Sbjct: 379731 aagataatcgtttattatccatgatataattgtattgaatgaagac 379776 Score = 192 bits (97), Expect = 2e-45 Identities = 103/105 (98%) Strand = Plus / Plus Query: 992 tgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatca 1051 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 54357 tgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatca 54416 Query: 1052 agataatcgttcattatccatgctataattgtattgaatgaagac 1096 ||| ||||||| ||||||||||||||||||||||||||||||||| Sbjct: 54417 agacaatcgtttattatccatgctataattgtattgaatgaagac 54461 Score = 186 bits (94), Expect = 1e-43 Identities = 103/106 (97%) Strand = Plus / Plus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 1050 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 86531 ctgttggaattatgccctagaggcaataataaatatagttattattataattcttgtatc 86590 Query: 1051 aagataatcgttcattatccatgctataattgtattgaatgaagac 1096 |||| ||||||| ||||||||||||||||||||||||||||||||| Sbjct: 86591 aagacaatcgtttattatccatgctataattgtattgaatgaagac 86636 Score = 168 bits (85), Expect = 3e-38 Identities = 103/108 (95%), Gaps = 2/108 (1%) Strand = Plus / Plus Query: 991 ctgttggaattatgccctagaggcaataataaat--atagttattattataattcctgta 1048 |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 79429 ctgttggaattatgccctagaggcaataataaatgtatagttattattataattcctgta 79488 Query: 1049 tcaagataatcgttcattatccatgctataattgtattgaatgaagac 1096 |||||||||| ||| |||||||||||||| |||||||||||||||||| Sbjct: 79489 tcaagataatagtttattatccatgctatgattgtattgaatgaagac 79536 Score = 151 bits (76), Expect = 6e-33 Identities = 100/107 (93%), Gaps = 2/107 (1%) Strand = Plus / Plus Query: 992 tgttggaattatgccctagaggcaataataaat--atagttattattataattcctgtat 1049 ||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||| Sbjct: 56060 tgttggaattatgccctagaggcaataataaatgtatatttattattataattccagtat 56119 Query: 1050 caagataatcgttcattatccatgctataattgtattgaatgaagac 1096 |||||||| ||| ||||||||||||||||||||||||||||||||| Sbjct: 56120 taagataatagtttattatccatgctataattgtattgaatgaagac 56166 Score = 131 bits (66), Expect = 6e-27 Identities = 97/106 (91%), Gaps = 1/106 (0%) Strand = Plus / Minus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 1050 ||||||||| |||||||||||||||||||||||| |||||||||||||| ||| | || Sbjct: 120251 ctgttggaaatatgccctagaggcaataataaat-tagttattattatatttcttcgttc 120193 Query: 1051 aagataatcgttcattatccatgctataattgtattgaatgaagac 1096 | |||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 120192 atgataatcgtttattatccatgctataattgtattgaatgaagac 120147 Score = 107 bits (54), Expect = 9e-20 Identities = 88/98 (89%), Gaps = 1/98 (1%) Strand = Plus / Minus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 1050 ||||||||| |||||||||||| ||||||||||| |||||||||||||| ||| | || Sbjct: 167293 ctgttggaaatatgccctagagtcaataataaat-tagttattattatatttcttcgttc 167235 Query: 1051 aagataatcgttcattatccatgctataattgtattga 1088 | |||||||||| ||||||||||||||||||||||||| Sbjct: 167234 atgataatcgtttattatccatgctataattgtattga 167197 Score = 99.6 bits (50), Expect = 2e-17 Identities = 87/98 (88%), Gaps = 1/98 (1%) Strand = Plus / Minus Query: 994 ttggaattatgccctagaggcaataataaatatagttattattataattcctgtatcaag 1053 |||||| ||||||||||||||||||||||| ||||||| ||||||| || | | ||||| Sbjct: 99011 ttggaaatatgccctagaggcaataataaa-atagttactattatattttccatttcaag 98953 Query: 1054 ataatcgttcattatccatgctataattgtattgaatg 1091 | ||||||| |||||||||||||||| ||||||||||| Sbjct: 98952 agaatcgtttattatccatgctataactgtattgaatg 98915 Score = 97.6 bits (49), Expect = 8e-17 Identities = 86/97 (88%), Gaps = 1/97 (1%) Strand = Plus / Minus Query: 992 tgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatca 1051 |||||||| |||||||||||||||||||||||| |||||||||||||| ||| | ||| Sbjct: 126796 tgttggaaatatgccctagaggcaataataaat-tagttattattatatttcttcgttca 126738 Query: 1052 agataatcgttcattatccatgctataattgtattga 1088 ||||||||| ||| ||||||||||||||||||||| Sbjct: 126737 tcataatcgtttattgtccatgctataattgtattga 126701 Score = 89.7 bits (45), Expect = 2e-14 Identities = 85/97 (87%), Gaps = 1/97 (1%) Strand = Plus / Minus Query: 992 tgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatca 1051 |||||||| |||||||||||||||||||||||| |||||||||||||| ||| | || Sbjct: 174114 tgttggaaatatgccctagaggcaataataaat-tagttattattatatttcttcgtcca 174056 Query: 1052 agataatcgttcattatccatgctataattgtattga 1088 ||||||||| |||||||||||||||||| |||||| Sbjct: 174055 tcataatcgtttattatccatgctataattttattga 174019
>gb|AF254799.1|AF254799 Hordeum vulgare tonoplast intrinsic protein 1 (TIP1), tonoplast intrinsic protein 2 (TIP2), and Rar1 (Rar1) genes, complete cds Length = 65979 Score = 200 bits (101), Expect = 8e-48 Identities = 104/105 (99%) Strand = Plus / Minus Query: 992 tgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatca 1051 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 38442 tgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatca 38383 Query: 1052 agataatcgttcattatccatgctataattgtattgaatgaagac 1096 ||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 38382 agataatcgtttattatccatgctataattgtattgaatgaagac 38338 Score = 196 bits (99), Expect = 1e-46 Identities = 105/107 (98%) Strand = Plus / Plus Query: 990 tctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtat 1049 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 63183 tctgttggaattatcccctagaggcaataataaatatagttattattataattcctgtat 63242 Query: 1050 caagataatcgttcattatccatgctataattgtattgaatgaagac 1096 ||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 63243 caagataatcgtttattatccatgctataattgtattgaatgaagac 63289 Score = 182 bits (92), Expect = 2e-42 Identities = 104/107 (97%), Gaps = 2/107 (1%) Strand = Plus / Minus Query: 992 tgttggaattatgccctagaggcaataataaatata--gttattattataattcctgtat 1049 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 16796 tgttggaattatgccctagaggcaataataaatatatagttattattataattcctgtat 16737 Query: 1050 caagataatcgttcattatccatgctataattgtattgaatgaagac 1096 ||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 16736 caagataatcgtttattatccatgctataattgtattgaatgaagac 16690 Score = 157 bits (79), Expect = 1e-34 Identities = 99/103 (96%), Gaps = 2/103 (1%) Strand = Plus / Minus Query: 996 ggaattatgccctagaggcaataataaatatagttattattata-attcctgtat-caag 1053 |||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||| Sbjct: 36402 ggaattatgccctagaggcaataataaatatagttattattatagatccctgtatccaag 36343 Query: 1054 ataatcgttcattatccatgctataattgtattgaatgaagac 1096 ||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 36342 ataatcgtttattatccatgctataattgtattgaatgaagac 36300 Score = 91.7 bits (46), Expect = 5e-15 Identities = 86/98 (87%), Gaps = 1/98 (1%) Strand = Plus / Minus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 1050 ||||||||| ||||||||||||||||| |||||| || ||||||||||| ||| | || Sbjct: 25866 ctgttggaaatatgccctagaggcaatgataaat-taattattattatatttcttagttc 25808 Query: 1051 aagataatcgttcattatccatgctataattgtattga 1088 | |||||||||| ||||| ||||||||||||||||||| Sbjct: 25807 atgataatcgtttattatgcatgctataattgtattga 25770
>gb|AY642926.1| Hordeum vulgare BAC CC24_14, complete sequence Length = 184425 Score = 200 bits (101), Expect = 8e-48 Identities = 104/105 (99%) Strand = Plus / Plus Query: 992 tgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatca 1051 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 99763 tgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatca 99822 Query: 1052 agataatcgttcattatccatgctataattgtattgaatgaagac 1096 ||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 99823 agataatcgtttattatccatgctataattgtattgaatgaagac 99867 Score = 194 bits (98), Expect = 5e-46 Identities = 104/106 (98%) Strand = Plus / Plus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 1050 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 96780 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 96839 Query: 1051 aagataatcgttcattatccatgctataattgtattgaatgaagac 1096 |||||||| ||| ||||||||||||||||||||||||||||||||| Sbjct: 96840 aagataatagtttattatccatgctataattgtattgaatgaagac 96885 Score = 186 bits (94), Expect = 1e-43 Identities = 103/106 (97%) Strand = Plus / Plus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 1050 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 87840 ctgtaggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 87899 Query: 1051 aagataatcgttcattatccatgctataattgtattgaatgaagac 1096 |||||||| ||| ||||||||||||||||||||||||||||||||| Sbjct: 87900 aagataatagtttattatccatgctataattgtattgaatgaagac 87945 Score = 176 bits (89), Expect = 1e-40 Identities = 104/108 (96%), Gaps = 2/108 (1%) Strand = Plus / Minus Query: 991 ctgttggaattatgccctagaggcaataataaat--atagttattattataattcctgta 1048 |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 92077 ctgttggaattatgccctagaggcaataataaatgtatagttattattataattcctgta 92018 Query: 1049 tcaagataatcgttcattatccatgctataattgtattgaatgaagac 1096 |||||||||| ||| ||||||||||||||||||||||||||||||||| Sbjct: 92017 tcaagataatagtttattatccatgctataattgtattgaatgaagac 91970 Score = 99.6 bits (50), Expect = 2e-17 Identities = 86/97 (88%), Gaps = 2/97 (2%) Strand = Plus / Plus Query: 992 tgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatca 1051 |||||||| |||||||||||||||||||||| || |||||||||||| ||| | ||| Sbjct: 25261 tgttggaaatatgccctagaggcaataataatta--gttattattatatttctttgttca 25318 Query: 1052 agataatcgttcattatccatgctataattgtattga 1088 |||||||||| ||||||||||||||||||||||||| Sbjct: 25319 tgataatcgtttattatccatgctataattgtattga 25355 Score = 71.9 bits (36), Expect = 5e-09 Identities = 84/96 (87%), Gaps = 3/96 (3%) Strand = Plus / Plus Query: 992 tgttggaattatgccctagaggcaataataaatatagttattattataatt-cctgtatc 1050 |||||||| ||||||||||||||||||||||| || |||||||| ||| || ||||| || Sbjct: 392 tgttggaaatatgccctagaggcaataataaa-atggttattatcatatttccctgt-tc 449 Query: 1051 aagataatcgttcattatccatgctataattgtatt 1086 | ||||||||| ||| | ||||||||||||||||| Sbjct: 450 atgataatcgtctattgttcatgctataattgtatt 485 Score = 71.9 bits (36), Expect = 5e-09 Identities = 84/96 (87%), Gaps = 3/96 (3%) Strand = Plus / Minus Query: 992 tgttggaattatgccctagaggcaataataaatatagttattattataatt-cctgtatc 1050 |||||||| ||||||||||||||||||||||| || |||||||| ||| || ||||| || Sbjct: 57806 tgttggaaatatgccctagaggcaataataaa-atggttattatcatatttccctgt-tc 57749 Query: 1051 aagataatcgttcattatccatgctataattgtatt 1086 | ||||||||| ||| | ||||||||||||||||| Sbjct: 57748 atgataatcgtctattgttcatgctataattgtatt 57713 Score = 63.9 bits (32), Expect = 1e-06 Identities = 35/36 (97%) Strand = Plus / Plus Query: 1053 gataatcgttcattatccatgctataattgtattga 1088 |||||||||| ||||||||||||||||||||||||| Sbjct: 45382 gataatcgtttattatccatgctataattgtattga 45417
>gb|AY643844.1|AY643842S3 Hordeum vulgare subsp. vulgare clones BAC 799C8 and 122A5 hardness locus region Length = 160897 Score = 194 bits (98), Expect = 5e-46 Identities = 104/106 (98%) Strand = Plus / Plus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 1050 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 74653 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 74712 Query: 1051 aagataatcgttcattatccatgctataattgtattgaatgaagac 1096 |||||||| ||| ||||||||||||||||||||||||||||||||| Sbjct: 74713 aagataatagtttattatccatgctataattgtattgaatgaagac 74758 Score = 186 bits (94), Expect = 1e-43 Identities = 103/106 (97%) Strand = Plus / Minus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 1050 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 145350 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 145291 Query: 1051 aagataatcgttcattatccatgctataattgtattgaatgaagac 1096 ||||||| ||| ||||||||||||||||||||||||||||||||| Sbjct: 145290 aagataactgtttattatccatgctataattgtattgaatgaagac 145245 Score = 184 bits (93), Expect = 5e-43 Identities = 102/105 (97%) Strand = Plus / Plus Query: 992 tgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatca 1051 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 67546 tgttgcaattatgccctagaggcaataataaatatagttattattataattcctgtatca 67605 Query: 1052 agataatcgttcattatccatgctataattgtattgaatgaagac 1096 ||||||| ||| ||||||||||||||||||||||||||||||||| Sbjct: 67606 agataatagtttattatccatgctataattgtattgaatgaagac 67650 Score = 172 bits (87), Expect = 2e-39 Identities = 102/106 (96%), Gaps = 2/106 (1%) Strand = Plus / Plus Query: 991 ctgttggaattatgccctagaggcaataataaat--atagttattattataattcctgta 1048 |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 107416 ctgttggaattatgccctagaggcaataataaatgtatagttattattataattcctgta 107475 Query: 1049 tcaagataatcgttcattatccatgctataattgtattgaatgaag 1094 |||||||||| ||| ||||||||||||||||||||||||||||||| Sbjct: 107476 tcaagataatagtttattatccatgctataattgtattgaatgaag 107521 Score = 170 bits (86), Expect = 7e-39 Identities = 101/105 (96%), Gaps = 2/105 (1%) Strand = Plus / Plus Query: 992 tgttggaattatgccctagaggcaataataaat--atagttattattataattcctgtat 1049 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 100286 tgttggaattatgccctagaggcaataataaatgtatagttattattataattcctgtat 100345 Query: 1050 caagataatcgttcattatccatgctataattgtattgaatgaag 1094 ||||||||| ||| ||||||||||||||||||||||||||||||| Sbjct: 100346 caagataatagtttattatccatgctataattgtattgaatgaag 100390 Score = 168 bits (85), Expect = 3e-38 Identities = 103/108 (95%), Gaps = 2/108 (1%) Strand = Plus / Minus Query: 991 ctgttggaattatgccctagaggcaataataaat--atagttattattataattcctgta 1048 |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | Sbjct: 137300 ctgttggaattatgccctagaggcaataataaatgtatagttattattataattcctgca 137241 Query: 1049 tcaagataatcgttcattatccatgctataattgtattgaatgaagac 1096 |||||||||| ||| ||||||||||||||||||||||||||||||||| Sbjct: 137240 tcaagataatagtttattatccatgctataattgtattgaatgaagac 137193 Score = 167 bits (84), Expect = 1e-37 Identities = 102/107 (95%), Gaps = 2/107 (1%) Strand = Plus / Minus Query: 992 tgttggaattatgccctagaggcaataataaat--atagttattattataattcctgtat 1049 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || Sbjct: 144192 tgttggaattatgccctagaggcaataataaatgtatagttattattataattcctgcat 144133 Query: 1050 caagataatcgttcattatccatgctataattgtattgaatgaagac 1096 ||||||||| ||| ||||||||||||||||||||||||||||||||| Sbjct: 144132 caagataatagtttattatccatgctataattgtattgaatgaagac 144086 Score = 115 bits (58), Expect = 4e-22 Identities = 89/98 (90%), Gaps = 1/98 (1%) Strand = Plus / Minus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 1050 ||||||||| ||||||||||||||||||||||| ||||||||||||||| ||| | || Sbjct: 28827 ctgttggaaatatgccctagaggcaataataaa-atagttattattatatttcttagttc 28769 Query: 1051 aagataatcgttcattatccatgctataattgtattga 1088 | |||||||||| ||||||||||||||||||||||||| Sbjct: 28768 atgataatcgtttattatccatgctataattgtattga 28731 Score = 115 bits (58), Expect = 4e-22 Identities = 89/98 (90%), Gaps = 1/98 (1%) Strand = Plus / Minus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 1050 ||||||||| |||||||||||||||||||||||| |||||||||||||| ||| | || Sbjct: 157688 ctgttggaaatatgccctagaggcaataataaat-tagttattattatatttcttagttc 157630 Query: 1051 aagataatcgttcattatccatgctataattgtattga 1088 | |||||||||| ||||||||||||||||||||||||| Sbjct: 157629 atgataatcgtttattatccatgctataattgtattga 157592 Score = 113 bits (57), Expect = 1e-21 Identities = 88/97 (90%), Gaps = 1/97 (1%) Strand = Plus / Minus Query: 992 tgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatca 1051 |||||||| |||||||||||||||||||||||| |||||||||||||| ||| | ||| Sbjct: 42158 tgttggaaatatgccctagaggcaataataaat-tagttattattatatttctttgttca 42100 Query: 1052 agataatcgttcattatccatgctataattgtattga 1088 |||||||||| ||||||||||||||||||||||||| Sbjct: 42099 tgataatcgtttattatccatgctataattgtattga 42063 Score = 111 bits (56), Expect = 5e-21 Identities = 87/96 (90%), Gaps = 1/96 (1%) Strand = Plus / Minus Query: 992 tgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatca 1051 |||||||| |||||||||||||||||||||||| |||||||||||||| ||| | ||| Sbjct: 35630 tgttggaaatatgccctagaggcaataataaat-tagttattattatatttcttagttca 35572 Query: 1052 agataatcgttcattatccatgctataattgtattg 1087 |||||||||| |||||||||||||||||||||||| Sbjct: 35571 tgataatcgtttattatccatgctataattgtattg 35536 Score = 107 bits (54), Expect = 9e-20 Identities = 88/98 (89%), Gaps = 1/98 (1%) Strand = Plus / Minus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 1050 ||||||||| ||||||||| |||||||||||||| |||||||||||||| ||| | || Sbjct: 23339 ctgttggaaatatgccctaaaggcaataataaat-tagttattattatatttctttgttc 23281 Query: 1051 aagataatcgttcattatccatgctataattgtattga 1088 | |||||||||| ||||||||||||||||||||||||| Sbjct: 23280 atgataatcgtttattatccatgctataattgtattga 23243 Score = 101 bits (51), Expect = 5e-18 Identities = 87/98 (88%), Gaps = 2/98 (2%) Strand = Plus / Minus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 1050 ||||||||| |||||||||||||||||||||| || |||||||||||| ||| | || Sbjct: 20052 ctgttggaaatatgccctagaggcaataataatta--gttattattatatttctttgttc 19995 Query: 1051 aagataatcgttcattatccatgctataattgtattga 1088 | |||||||||| ||||||||||||||||||||||||| Sbjct: 19994 atgataatcgtttattatccatgctataattgtattga 19957 Score = 93.7 bits (47), Expect = 1e-15 Identities = 86/98 (87%), Gaps = 2/98 (2%) Strand = Plus / Minus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 1050 |||| |||| |||||||||||||||||||||| || |||||||||||| ||| | || Sbjct: 37310 ctgtcggaaatatgccctagaggcaataataatta--gttattattatatttctttgttc 37253 Query: 1051 aagataatcgttcattatccatgctataattgtattga 1088 | |||||||||| ||||||||||||||||||||||||| Sbjct: 37252 atgataatcgtttattatccatgctataattgtattga 37215 Score = 87.7 bits (44), Expect = 8e-14 Identities = 83/95 (87%), Gaps = 2/95 (2%) Strand = Plus / Minus Query: 994 ttggaattatgccctagaggcaataataaatatagttattattataattcctgtatcaag 1053 |||||| |||||||||||||||||||||| || |||||||||||| ||| | ||| | Sbjct: 37855 ttggaaatatgccctagaggcaataataatta--gttattattatatttctttgttcatg 37798 Query: 1054 ataatcgttcattatccatgctataattgtattga 1088 |||| |||| ||||||||||||||||||||||||| Sbjct: 37797 ataaccgtttattatccatgctataattgtattga 37763
>gb|AF474373.1| Hordeum vulgare subsp. vulgare BAC 259I16, complete sequence Length = 124050 Score = 194 bits (98), Expect = 5e-46 Identities = 104/106 (98%) Strand = Plus / Minus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 1050 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 39022 ctgttggaattattccctagaggcaataataaatatagttattattataattcctgtatc 38963 Query: 1051 aagataatcgttcattatccatgctataattgtattgaatgaagac 1096 |||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 38962 aagataatcgtttattatccatgctataattgtattgaatgaagac 38917 Score = 192 bits (97), Expect = 2e-45 Identities = 103/105 (98%) Strand = Plus / Minus Query: 992 tgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatca 1051 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 46140 tgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatca 46081 Query: 1052 agataatcgttcattatccatgctataattgtattgaatgaagac 1096 |||||||| || ||||||||||||||||||||||||||||||||| Sbjct: 46080 agataatcatttattatccatgctataattgtattgaatgaagac 46036 Score = 178 bits (90), Expect = 3e-41 Identities = 102/106 (96%) Strand = Plus / Plus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 1050 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || Sbjct: 35658 ctgttggaattatgccctagaggcaataataaatatggttattattataattcctgtgtc 35717 Query: 1051 aagataatcgttcattatccatgctataattgtattgaatgaagac 1096 |||||||| ||| ||||||||||||||||||||||||||||||||| Sbjct: 35718 aagataatagtttattatccatgctataattgtattgaatgaagac 35763 Score = 176 bits (89), Expect = 1e-40 Identities = 101/105 (96%) Strand = Plus / Plus Query: 992 tgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatca 1051 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| Sbjct: 28545 tgttggaattatgccctagaggcaataataaatatggttattattataattcctgtgtca 28604 Query: 1052 agataatcgttcattatccatgctataattgtattgaatgaagac 1096 ||||||| ||| ||||||||||||||||||||||||||||||||| Sbjct: 28605 agataatagtttattatccatgctataattgtattgaatgaagac 28649 Score = 176 bits (89), Expect = 1e-40 Identities = 104/108 (96%), Gaps = 2/108 (1%) Strand = Plus / Plus Query: 991 ctgttggaattatgccctagaggcaataataaat--atagttattattataattcctgta 1048 |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 121239 ctgttggaattatgccctagaggcaataataaatgtatagttattattataattcctgta 121298 Query: 1049 tcaagataatcgttcattatccatgctataattgtattgaatgaagac 1096 |||||||||| ||| ||||||||||||||||||||||||||||||||| Sbjct: 121299 tcaagataatagtttattatccatgctataattgtattgaatgaagac 121346 Score = 97.6 bits (49), Expect = 8e-17 Identities = 86/97 (88%), Gaps = 1/97 (1%) Strand = Plus / Minus Query: 992 tgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatca 1051 |||||||| |||||||||||||||||||||||| || | ||||||||| ||| | ||| Sbjct: 103170 tgttggaaatatgccctagaggcaataataaat-taatcattattatatttctttgttca 103112 Query: 1052 agataatcgttcattatccatgctataattgtattga 1088 |||||||||| ||||||||||||||||||||||||| Sbjct: 103111 tgataatcgtttattatccatgctataattgtattga 103075
>gb|AY485643.1| Hordeum vulgare subsp. vulgare BAC 615K1, complete sequence Length = 114996 Score = 194 bits (98), Expect = 5e-46 Identities = 104/106 (98%) Strand = Plus / Plus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 1050 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 21194 ctgttggaattatgccctagaggcaataataaatatggttattattataattcctgtatc 21253 Query: 1051 aagataatcgttcattatccatgctataattgtattgaatgaagac 1096 |||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 21254 aagataatcgtttattatccatgctataattgtattgaatgaagac 21299 Score = 184 bits (93), Expect = 5e-43 Identities = 102/105 (97%) Strand = Plus / Plus Query: 992 tgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatca 1051 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 14087 tgttggaattatgccctagaggcaataataaatatgtttattattataattcctgtatca 14146 Query: 1052 agataatcgttcattatccatgctataattgtattgaatgaagac 1096 ||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 14147 agataatcgtttattatccatgctataattgtattgaatgaagac 14191 Score = 174 bits (88), Expect = 4e-40 Identities = 103/107 (96%), Gaps = 2/107 (1%) Strand = Plus / Minus Query: 992 tgttggaattatgccctagaggcaataataaatata--gttattattataattcctgtat 1049 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 58426 tgttggaattatgccctagaggcaataataaatatatagttattattataattcctgtat 58367 Query: 1050 caagataatcgttcattatccatgctataattgtattgaatgaagac 1096 ||||||||| ||| ||||||||||||||||||||||||||||||||| Sbjct: 58366 caagataatggtttattatccatgctataattgtattgaatgaagac 58320 Score = 113 bits (57), Expect = 1e-21 Identities = 88/97 (90%), Gaps = 1/97 (1%) Strand = Plus / Minus Query: 992 tgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatca 1051 |||||||| |||||||||||||||||||||||| |||||||||||||| ||| | ||| Sbjct: 32395 tgttggaaatatgccctagaggcaataataaat-tagttattattatatttctttgttca 32337 Query: 1052 agataatcgttcattatccatgctataattgtattga 1088 |||||||||| ||||||||||||||||||||||||| Sbjct: 32336 tgataatcgtttattatccatgctataattgtattga 32300
>emb|Z84569.1|HVE1393VR H.vulgare BARE-1 long terminal repeat DNA; ID E1393VR Length = 388 Score = 194 bits (98), Expect = 5e-46 Identities = 104/106 (98%) Strand = Plus / Plus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 1050 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 141 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 200 Query: 1051 aagataatcgttcattatccatgctataattgtattgaatgaagac 1096 |||||||| ||| ||||||||||||||||||||||||||||||||| Sbjct: 201 aagataatagtttattatccatgctataattgtattgaatgaagac 246
>emb|Z84547.1|HV4R H.vulgare BARE-1 long terminal repeat DNA; ID 4R Length = 472 Score = 194 bits (98), Expect = 5e-46 Identities = 104/106 (98%) Strand = Plus / Plus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 1050 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 326 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 385 Query: 1051 aagataatcgttcattatccatgctataattgtattgaatgaagac 1096 |||||||||||| |||||||||||||||||||||||||| |||||| Sbjct: 386 aagataatcgtttattatccatgctataattgtattgaaagaagac 431
>emb|Z84546.1|HV2RC H.vulgare BARE-1 long terminal repeat DNA; ID 2RC Length = 132 Score = 192 bits (97), Expect = 2e-45 Identities = 103/105 (98%) Strand = Plus / Plus Query: 992 tgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatca 1051 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 tgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatca 60 Query: 1052 agataatcgttcattatccatgctataattgtattgaatgaagac 1096 ||||||||||| ||||||||||||||||||||||| ||||||||| Sbjct: 61 agataatcgtttattatccatgctataattgtattaaatgaagac 105
>emb|Z84567.1|HV1371VRC H.vulgare BARE-1 long terminal repeat DNA; ID E1371VRC Length = 278 Score = 190 bits (96), Expect = 7e-45 Identities = 102/104 (98%) Strand = Plus / Plus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 1050 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 131 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 190 Query: 1051 aagataatcgttcattatccatgctataattgtattgaatgaag 1094 |||||||| ||| ||||||||||||||||||||||||||||||| Sbjct: 191 aagataatagtttattatccatgctataattgtattgaatgaag 234
>gb|AY943294.1| Hordeum vulgare subsp. vulgare clone BAC 673I14, complete sequence Length = 108608 Score = 184 bits (93), Expect = 5e-43 Identities = 102/105 (97%) Strand = Plus / Plus Query: 992 tgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatca 1051 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 103355 tgttggaattatgccctagaggcaataataaatatagttattattataattcttgtatca 103414 Query: 1052 agataatcgttcattatccatgctataattgtattgaatgaagac 1096 ||||||||||| |||||||||||||||||||||||||||| |||| Sbjct: 103415 agataatcgtttattatccatgctataattgtattgaatggagac 103459 Score = 178 bits (90), Expect = 3e-41 Identities = 102/106 (96%) Strand = Plus / Minus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 1050 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 104329 ctgttgaaattatgccctagaggcaataataaatatagttattattataattcctgtatc 104270 Query: 1051 aagataatcgttcattatccatgctataattgtattgaatgaagac 1096 |||||||| ||| ||| ||||||||||||||||||||||||||||| Sbjct: 104269 aagataattgtttattgtccatgctataattgtattgaatgaagac 104224 Score = 107 bits (54), Expect = 9e-20 Identities = 88/98 (89%), Gaps = 1/98 (1%) Strand = Plus / Minus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 1050 ||||||||| ||| |||||||||||||||||||| |||||||||||||| ||| | || Sbjct: 55414 ctgttggaaatattccctagaggcaataataaat-tagttattattatatttcttagttc 55356 Query: 1051 aagataatcgttcattatccatgctataattgtattga 1088 | |||||||||| ||||||||||||||||||||||||| Sbjct: 55355 atgataatcgtttattatccatgctataattgtattga 55318 Score = 97.6 bits (49), Expect = 8e-17 Identities = 86/97 (88%), Gaps = 1/97 (1%) Strand = Plus / Minus Query: 992 tgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatca 1051 ||||| || ||| |||||||||||||||||||| |||||||||||||| ||| | ||| Sbjct: 62177 tgttgtaaatattccctagaggcaataataaat-tagttattattatatttcttagttca 62119 Query: 1052 agataatcgttcattatccatgctataattgtattga 1088 |||||||||| ||||||||||||||||||||||||| Sbjct: 62118 tgataatcgtttattatccatgctataattgtattga 62082 Score = 61.9 bits (31), Expect = 5e-06 Identities = 80/95 (84%), Gaps = 1/95 (1%) Strand = Plus / Plus Query: 992 tgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatca 1051 |||||||| ||||||||| ||||||||||||| || |||||| | ||| ||||| ||| Sbjct: 20666 tgttggaaatatgccctaaaggcaataataaa-atggttattgtcatatttccttgttca 20724 Query: 1052 agataatcgttcattatccatgctataattgtatt 1086 ||||||||| ||| | ||||||||||||||||| Sbjct: 20725 tgataatcgtctattgttcatgctataattgtatt 20759
>emb|Z84570.1|HVE1395XR H.vulgare BARE-1 long terminal repeat DNA; ID E1395XR Length = 533 Score = 184 bits (93), Expect = 5e-43 Identities = 102/105 (97%) Strand = Plus / Plus Query: 992 tgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatca 1051 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 387 tgttggaattattccctagaggcaataataaatatagttattattataattcctgtatca 446 Query: 1052 agataatcgttcattatccatgctataattgtattgaatgaagac 1096 ||||||||||| ||||||||||||||||||||||||| ||||||| Sbjct: 447 agataatcgtttattatccatgctataattgtattgactgaagac 491
>gb|AF474982.1| Hordeum vulgare clone BAC 011009, complete sequence Length = 77136 Score = 180 bits (91), Expect = 7e-42 Identities = 100/103 (97%) Strand = Plus / Plus Query: 994 ttggaattatgccctagaggcaataataaatatagttattattataattcctgtatcaag 1053 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 72940 ttggaattatgccctaaaggcaataataaatatagttattattataattcctgtatcaag 72999 Query: 1054 ataatcgttcattatccatgctataattgtattgaatgaagac 1096 | ||||||| ||||||||||||||||||||||||||||||||| Sbjct: 73000 aaaatcgtttattatccatgctataattgtattgaatgaagac 73042 Score = 149 bits (75), Expect = 3e-32 Identities = 97/103 (94%), Gaps = 1/103 (0%) Strand = Plus / Minus Query: 992 tgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatca 1051 |||||||||||||||||||||||||| || |||| ||||||||||||||||||| ||||| Sbjct: 45374 tgttggaattatgccctagaggcaatgattaata-agttattattataattcctatatca 45316 Query: 1052 agataatcgttcattatccatgctataattgtattgaatgaag 1094 |||||||| || ||||||||||||||||||||||||||||||| Sbjct: 45315 agataatcatttattatccatgctataattgtattgaatgaag 45273 Score = 117 bits (59), Expect = 9e-23 Identities = 93/103 (90%), Gaps = 1/103 (0%) Strand = Plus / Minus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 1050 ||||||||| |||||||||||||||||||||||| |||||||||||||| || | || Sbjct: 67457 ctgttggaaatatgccctagaggcaataataaat-tagttattattatatttatttgttc 67399 Query: 1051 aagataatcgttcattatccatgctataattgtattgaatgaa 1093 | |||||||||| |||||||||||||||||||||||||||||| Sbjct: 67398 atgataatcgtttattatccatgctataattgtattgaatgaa 67356 Score = 97.6 bits (49), Expect = 8e-17 Identities = 86/97 (88%), Gaps = 1/97 (1%) Strand = Plus / Minus Query: 992 tgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatca 1051 |||||||| ||||||||||||| |||||||||| | |||||||||||| ||||| ||| Sbjct: 47161 tgttggaaatatgccctagaggaaataataaat-tggttattattatatttccttgttca 47103 Query: 1052 agataatcgttcattatccatgctataattgtattga 1088 |||||||||| ||||||||||||| ||||||||||| Sbjct: 47102 tgataatcgtttattatccatgctagaattgtattga 47066 Score = 91.7 bits (46), Expect = 5e-15 Identities = 89/102 (87%), Gaps = 1/102 (0%) Strand = Plus / Minus Query: 992 tgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatca 1051 |||||||| |||||||||||||||||| ||||| |||||||||| ||| ||| | ||| Sbjct: 76414 tgttggaaatatgccctagaggcaatattaaat-tagttattatcatatttctttattca 76356 Query: 1052 agataatcgttcattatccatgctataattgtattgaatgaa 1093 |||||| ||| |||||||||| ||||||||||||||||||| Sbjct: 76355 tgataatagtttattatccatgatataattgtattgaatgaa 76314 Score = 71.9 bits (36), Expect = 5e-09 Identities = 82/96 (85%), Gaps = 1/96 (1%) Strand = Plus / Plus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 1050 ||||||||| ||||||||||||||||||||||| || |||||||| ||| ||||| || Sbjct: 37292 ctgttggaaatatgccctagaggcaataataaa-atggttattatcatatttccttgctc 37350 Query: 1051 aagataatcgttcattatccatgctataattgtatt 1086 | ||||||| | ||| | ||||||||||||||||| Sbjct: 37351 atgataatcatctattgttcatgctataattgtatt 37386 Score = 69.9 bits (35), Expect = 2e-08 Identities = 81/95 (85%), Gaps = 1/95 (1%) Strand = Plus / Plus Query: 992 tgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatca 1051 |||||||| ||||||||||||||||||||||| || |||||||| ||| ||||| ||| Sbjct: 30264 tgttggaaatatgccctagaggcaataataaa-atggttattatcatatttccttgctca 30322 Query: 1052 agataatcgttcattatccatgctataattgtatt 1086 |||||||| ||| | ||||||||||||||||| Sbjct: 30323 tcataatcgtctattgttcatgctataattgtatt 30357
>emb|Y18769.2|HVUY18769 Hordeum vulgare BARE-1 long terminal repeat DNA (HVULC) Length = 1830 Score = 180 bits (91), Expect = 7e-42 Identities = 103/107 (96%) Strand = Plus / Plus Query: 990 tctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtat 1049 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 1 tctgttggaattatgccctagaggcaatgataaatatagttattattataattcctgtat 60 Query: 1050 caagataatcgttcattatccatgctataattgtattgaatgaagac 1096 ||||||||| ||| ||||||||||||||||||||||||| ||||||| Sbjct: 61 caagataattgtttattatccatgctataattgtattgagtgaagac 107
>emb|Y18768.2|HVUY18768 Hordeum vulgare BARE-1 long terminal repeat DNA (HVULB) Length = 1736 Score = 180 bits (91), Expect = 7e-42 Identities = 100/103 (97%) Strand = Plus / Plus Query: 992 tgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatca 1051 |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| Sbjct: 3 tgttggaattatgccctagaggcaatgataaatatagttactattataattcctgtatca 62 Query: 1052 agataatcgttcattatccatgctataattgtattgaatgaag 1094 ||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 63 agataatcgtttattatccatgctataattgtattgaatgaag 105
>emb|Z84556.1|HV1319LRC H.vulgare BARE-1 long terminal repeat DNA; ID E1319LRC Length = 523 Score = 178 bits (90), Expect = 3e-41 Identities = 102/106 (96%) Strand = Plus / Plus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 1050 ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| Sbjct: 393 ctgttggaattatgccctagaggcaatcataaatatagttattattataattcttgtatc 452 Query: 1051 aagataatcgttcattatccatgctataattgtattgaatgaagac 1096 |||||||| ||| ||||||||||||||||||||||||||||||||| Sbjct: 453 aagataattgtttattatccatgctataattgtattgaatgaagac 498
>gb|AF509771.1| Hordeum vulgare subsp. vulgare isolate NRG048 Rpg1 region, genomic sequence Length = 6190 Score = 176 bits (89), Expect = 1e-40 Identities = 104/108 (96%), Gaps = 2/108 (1%) Strand = Plus / Plus Query: 991 ctgttggaattatgccctagaggcaataataaat--atagttattattataattcctgta 1048 |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 512 ctgttggaattatgccctagaggcaataataaatgtatagttattattataattcctgta 571 Query: 1049 tcaagataatcgttcattatccatgctataattgtattgaatgaagac 1096 |||||||||| ||| ||||||||||||||||||||||||||||||||| Sbjct: 572 tcaagataatagtttattatccatgctataattgtattgaatgaagac 619
>emb|Z84545.1|HV22RCX H.vulgare BARE-1 long terminal repeat DNA; ID 22RCX Length = 294 Score = 176 bits (89), Expect = 1e-40 Identities = 102/105 (97%), Gaps = 1/105 (0%) Strand = Plus / Plus Query: 992 tgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatca 1051 |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| Sbjct: 162 tgttggaattatgccctagaggcaatgataaata-agttattattataattcctgtatca 220 Query: 1052 agataatcgttcattatccatgctataattgtattgaatgaagac 1096 ||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 221 agataatcgtttattatccatgctataattgtattgaatgaagac 265
>gb|AY642925.1| Hordeum vulgare BAC 124C9, complete sequence Length = 12258 Score = 176 bits (89), Expect = 1e-40 Identities = 104/108 (96%), Gaps = 2/108 (1%) Strand = Plus / Minus Query: 991 ctgttggaattatgccctagaggcaataataaat--atagttattattataattcctgta 1048 |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 7344 ctgttggaattatgccctagaggcaataataaatgtatagttattattataattcctgta 7285 Query: 1049 tcaagataatcgttcattatccatgctataattgtattgaatgaagac 1096 |||||||||| ||| ||||||||||||||||||||||||||||||||| Sbjct: 7284 tcaagataatagtttattatccatgctataattgtattgaatgaagac 7237
>gb|AF427791.1| Hordeum vulgare Mla locus, complete sequence Length = 261265 Score = 174 bits (88), Expect = 4e-40 Identities = 103/107 (96%), Gaps = 2/107 (1%) Strand = Plus / Plus Query: 992 tgttggaattatgccctagaggcaataataaat--atagttattattataattcctgtat 1049 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 187333 tgttggaattatgccctagaggcaataataaatgtatagttattattataattcctgtat 187392 Query: 1050 caagataatcgttcattatccatgctataattgtattgaatgaagac 1096 ||||||||| ||| ||||||||||||||||||||||||||||||||| Sbjct: 187393 caagataatagtttattatccatgctataattgtattgaatgaagac 187439 Score = 115 bits (58), Expect = 4e-22 Identities = 89/98 (90%), Gaps = 1/98 (1%) Strand = Plus / Plus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 1050 ||||||||| |||||||||||||||||||||||| |||||||||||||| ||| | || Sbjct: 144760 ctgttggaaatatgccctagaggcaataataaat-tagttattattatatttcttagttc 144818 Query: 1051 aagataatcgttcattatccatgctataattgtattga 1088 | |||||||||| ||||||||||||||||||||||||| Sbjct: 144819 atgataatcgtttattatccatgctataattgtattga 144856 Score = 115 bits (58), Expect = 4e-22 Identities = 89/98 (90%), Gaps = 1/98 (1%) Strand = Plus / Plus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 1050 ||||||||| |||||||||||||||||||||||| |||||||||||||| ||| | || Sbjct: 151558 ctgttggaaatatgccctagaggcaataataaat-tagttattattatatttcttagttc 151616 Query: 1051 aagataatcgttcattatccatgctataattgtattga 1088 | |||||||||| ||||||||||||||||||||||||| Sbjct: 151617 atgataatcgtttattatccatgctataattgtattga 151654 Score = 115 bits (58), Expect = 4e-22 Identities = 89/98 (90%), Gaps = 1/98 (1%) Strand = Plus / Minus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 1050 ||||||||| |||||||||||||||||||||||| |||||||||||||| ||| | || Sbjct: 167705 ctgttggaaatatgccctagaggcaataataaat-tagttattattatatttcttagttc 167647 Query: 1051 aagataatcgttcattatccatgctataattgtattga 1088 | |||||||||| ||||||||||||||||||||||||| Sbjct: 167646 atgataatcgtttattatccatgctataattgtattga 167609 Score = 113 bits (57), Expect = 1e-21 Identities = 88/97 (90%), Gaps = 1/97 (1%) Strand = Plus / Minus Query: 992 tgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatca 1051 |||||||| |||||||||||||||||||||||| |||||||||||||| ||| | ||| Sbjct: 237996 tgttggaaatatgccctagaggcaataataaat-tagttattattatatttcttagttca 237938 Query: 1052 agataatcgttcattatccatgctataattgtattga 1088 |||||||||| ||||||||||||||||||||||||| Sbjct: 237937 tgataatcgtttattatccatgctataattgtattga 237901 Score = 107 bits (54), Expect = 9e-20 Identities = 88/98 (89%), Gaps = 1/98 (1%) Strand = Plus / Minus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 1050 ||||||||| |||||||||||||||| ||||||| |||||||||||||| ||| | || Sbjct: 174478 ctgttggaaatatgccctagaggcaacaataaat-tagttattattatatttcttagttc 174420 Query: 1051 aagataatcgttcattatccatgctataattgtattga 1088 | |||||||||| ||||||||||||||||||||||||| Sbjct: 174419 atgataatcgtttattatccatgctataattgtattga 174382 Score = 107 bits (54), Expect = 9e-20 Identities = 88/98 (89%), Gaps = 1/98 (1%) Strand = Plus / Plus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 1050 ||||||||| |||||||||||||||||||||||| |||||||||||||| ||| | || Sbjct: 249360 ctgttggaaatatgccctagaggcaataataaat-tagttattattatatttcttagttc 249418 Query: 1051 aagataatcgttcattatccatgctataattgtattga 1088 | |||||||||| |||||||||||||||||||||||| Sbjct: 249419 atgataatcgtttgttatccatgctataattgtattga 249456 Score = 99.6 bits (50), Expect = 2e-17 Identities = 87/98 (88%), Gaps = 1/98 (1%) Strand = Plus / Plus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 1050 ||||||||| ||||||||||||| |||||||||| |||||||||||||| ||| | || Sbjct: 242561 ctgttggaaatatgccctagaggaaataataaat-tagttattattatatttcttagttc 242619 Query: 1051 aagataatcgttcattatccatgctataattgtattga 1088 | |||||||||| |||||||||||||||||||||||| Sbjct: 242620 atgataatcgtttgttatccatgctataattgtattga 242657 Score = 79.8 bits (40), Expect = 2e-11 Identities = 83/96 (86%), Gaps = 1/96 (1%) Strand = Plus / Minus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 1050 ||||||||| ||||||||||||||||||||||| || |||||||| ||| ||||| || Sbjct: 160185 ctgttggaaatatgccctagaggcaataataaa-atggttattatcatatttccttgttc 160127 Query: 1051 aagataatcgttcattatccatgctataattgtatt 1086 | ||||||||| ||| | ||||||||||||||||| Sbjct: 160126 atgataatcgtctattgttcatgctataattgtatt 160091 Score = 77.8 bits (39), Expect = 8e-11 Identities = 82/95 (86%), Gaps = 1/95 (1%) Strand = Plus / Minus Query: 992 tgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatca 1051 |||||||| ||||||||||||||||||||||| || |||||||| ||| ||||| ||| Sbjct: 175632 tgttggaaatatgccctagaggcaataataaa-atggttattatcatatttccttgttca 175574 Query: 1052 agataatcgttcattatccatgctataattgtatt 1086 ||||||||| ||| | ||||||||||||||||| Sbjct: 175573 tgataatcgtctattgttcatgctataattgtatt 175539 Score = 50.1 bits (25), Expect = 0.017 Identities = 46/53 (86%) Strand = Plus / Plus Query: 992 tgttggaattatgccctagaggcaataataaatatagttattattataattcc 1044 |||||||| |||||||||||| |||||||||| | ||||||||||| |||| Sbjct: 46165 tgttggaaatatgccctagagacaataataaaagtgattattattatatttcc 46217
>emb|Y18770.2|HVUY18770 Hordeum vulgare BARE-1 long terminal repeat DNA (HVULD) Length = 1723 Score = 170 bits (86), Expect = 7e-39 Identities = 104/109 (95%), Gaps = 2/109 (1%) Strand = Plus / Plus Query: 990 tctgttggaattatgccctagaggcaataataaat--atagttattattataattcctgt 1047 |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| Sbjct: 1 tctgttggaattatgccctagaggcaatgataaatgtatagttattattataattcctgt 60 Query: 1048 atcaagataatcgttcattatccatgctataattgtattgaatgaagac 1096 ||||||||||| ||| ||||||||||||||||||||||||||||||||| Sbjct: 61 atcaagataatagtttattatccatgctataattgtattgaatgaagac 109
>emb|Z17327.1|HVBARE1 H.vulgare DNA for BARE-1 copia-like retroelement Length = 13271 Score = 163 bits (82), Expect = 2e-36 Identities = 101/106 (95%), Gaps = 1/106 (0%) Strand = Plus / Plus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 1050 |||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||| Sbjct: 7411 ctgtcggaattatgccctagaggcaatgataaata-agttattattataattcctgtatc 7469 Query: 1051 aagataatcgttcattatccatgctataattgtattgaatgaagac 1096 |||||||||||| |||||||||||||||||||| |||||||||||| Sbjct: 7470 aagataatcgtttattatccatgctataattgtgttgaatgaagac 7515 Score = 155 bits (78), Expect = 4e-34 Identities = 100/106 (94%), Gaps = 1/106 (0%) Strand = Plus / Plus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 1050 ||||||||||||||||||||||||||| ||||||| | ||||||||||||||| |||||| Sbjct: 308 ctgttggaattatgccctagaggcaatgataaata-atttattattataattcatgtatc 366 Query: 1051 aagataatcgttcattatccatgctataattgtattgaatgaagac 1096 |||||||||||| |||||||||||||||||||| |||||||||||| Sbjct: 367 aagataatcgtttattatccatgctataattgtgttgaatgaagac 412
>emb|Y18767.2|HVUY18767 Hordeum vulgare BARE-1 long terminal repeat DNA (HVULA) Length = 1807 Score = 161 bits (81), Expect = 7e-36 Identities = 99/105 (94%) Strand = Plus / Plus Query: 992 tgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatca 1051 |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| Sbjct: 3 tgttggaattatgccctagaggcaatgataaatatagttattatcataattcctgtatca 62 Query: 1052 agataatcgttcattatccatgctataattgtattgaatgaagac 1096 ||||||| | | |||||||||||||||||||||||||||| |||| Sbjct: 63 agataatggattattatccatgctataattgtattgaatgtagac 107
>emb|AJ303051.1|TAE303051 Triticum aestivum transposon BARE-1, LTR Length = 882 Score = 161 bits (81), Expect = 7e-36 Identities = 99/105 (94%) Strand = Plus / Plus Query: 992 tgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatca 1051 ||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||| || Sbjct: 153 tgttgaaattatgccctagagacaataataaatatagttattattataattcgtgtacca 212 Query: 1052 agataatcgttcattatccatgctataattgtattgaatgaagac 1096 ||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct: 213 agatagtcgtttattatccatgctataattgtattgaatgaagac 257
>gb|AY268139.1| Hordeum vulgare BAC 184G9, complete sequece Length = 120562 Score = 147 bits (74), Expect = 1e-31 Identities = 96/102 (94%), Gaps = 1/102 (0%) Strand = Plus / Minus Query: 992 tgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatca 1051 |||||||| ||||||||||||||||| ||||| ||||||||||||||| ||||||| ||| Sbjct: 59149 tgttggaaatatgccctagaggcaatgataaa-atagttattattatatttcctgtttca 59091 Query: 1052 agataatcgttcattatccatgctataattgtattgaatgaa 1093 ||||||||||| |||||||||||||||||||||||||||||| Sbjct: 59090 agataatcgtttattatccatgctataattgtattgaatgaa 59049 Score = 115 bits (58), Expect = 4e-22 Identities = 89/98 (90%), Gaps = 1/98 (1%) Strand = Plus / Plus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 1050 ||||||||| |||||||||||||||||||||||| |||||||||||||| ||| | || Sbjct: 10560 ctgttggaaatatgccctagaggcaataataaat-tagttattattatatttctttgttc 10618 Query: 1051 aagataatcgttcattatccatgctataattgtattga 1088 | |||||||||| ||||||||||||||||||||||||| Sbjct: 10619 atgataatcgtttattatccatgctataattgtattga 10656 Score = 105 bits (53), Expect = 3e-19 Identities = 87/97 (89%), Gaps = 1/97 (1%) Strand = Plus / Plus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 1050 |||||| || |||||||||||||||||||||||| |||||||||||||| ||| | || Sbjct: 3769 ctgttgaaaatatgccctagaggcaataataaat-tagttattattatatttctttgttc 3827 Query: 1051 aagataatcgttcattatccatgctataattgtattg 1087 | |||||||||| |||||||||||||||||||||||| Sbjct: 3828 atgataatcgtttattatccatgctataattgtattg 3864 Score = 101 bits (51), Expect = 5e-18 Identities = 85/95 (89%), Gaps = 1/95 (1%) Strand = Plus / Plus Query: 994 ttggaattatgccctagaggcaataataaatatagttattattataattcctgtatcaag 1053 |||||| |||||||||||||||||||||||| |||||||||||||| ||| | ||| | Sbjct: 77858 ttggaaatatgccctagaggcaataataaat-tagttattattatatttctttgttcatg 77916 Query: 1054 ataatcgttcattatccatgctataattgtattga 1088 ||||||||| ||||| ||||||||||||||||||| Sbjct: 77917 ataatcgtttattatacatgctataattgtattga 77951 Score = 99.6 bits (50), Expect = 2e-17 Identities = 87/98 (88%), Gaps = 1/98 (1%) Strand = Plus / Plus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 1050 |||||| || ||||||||||||| |||||||||| |||||||||||||| ||| | || Sbjct: 84735 ctgttgtaaatatgccctagaggaaataataaat-tagttattattatatttctttgttc 84793 Query: 1051 aagataatcgttcattatccatgctataattgtattga 1088 | |||||||||| ||||||||||||||||||||||||| Sbjct: 84794 atgataatcgtttattatccatgctataattgtattga 84831 Score = 91.7 bits (46), Expect = 5e-15 Identities = 86/98 (87%), Gaps = 1/98 (1%) Strand = Plus / Minus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 1050 ||||||| | ||||||||| |||||||||||||| | |||||||||||| ||||| || Sbjct: 109261 ctgttgggaatatgccctataggcaataataaat-tggttattattatatttccttgttc 109203 Query: 1051 aagataatcgttcattatccatgctataattgtattga 1088 | |||||||||| ||||||||||||| ||||||||||| Sbjct: 109202 atgataatcgtttattatccatgctagaattgtattga 109165 Score = 63.9 bits (32), Expect = 1e-06 Identities = 81/96 (84%), Gaps = 1/96 (1%) Strand = Plus / Minus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 1050 ||||||||| ||| || |||||||||||||||| | |||||||||||| ||||| || Sbjct: 89306 ctgttggaaatattccatagaggcaataataaag-tggttattattatatttccttgttc 89248 Query: 1051 aagataatcgttcattatccatgctataattgtatt 1086 | |||||| || ||||| ||||||||||||||||| Sbjct: 89247 atgataattgtctattattcatgctataattgtatt 89212
>emb|Z84558.1|HVE1322KR H.vulgare BARE-1 long terminal repeat DNA; ID E1322KR Length = 467 Score = 141 bits (71), Expect = 6e-30 Identities = 96/103 (93%), Gaps = 1/103 (0%) Strand = Plus / Plus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 1050 ||||| ||| ||||||||||||||||| ||||| ||||||||||||||| ||||||| || Sbjct: 322 ctgttcgaaatatgccctagaggcaatgataaa-atagttattattatatttcctgtttc 380 Query: 1051 aagataatcgttcattatccatgctataattgtattgaatgaa 1093 |||||||||||| |||||||||||||||||||||||||||||| Sbjct: 381 aagataatcgtttattatccatgctataattgtattgaatgaa 423
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6 Length = 30731886 Score = 137 bits (69), Expect = 1e-28 Identities = 129/149 (86%) Strand = Plus / Plus Query: 738 ggtacttggcgccggagtacgcctcgacggggaagctgacggagaaatcagacgtgttct 797 |||||||||| || ||||| || || || || |||||||| |||||||| |||||||||| Sbjct: 16547321 ggtacttggctccagagtatgcatccacaggaaagctgaccgagaaatcggacgtgttct 16547380 Query: 798 tcttcggggtggtgctcctggagctcatcaccggccggaagcccgtcgacacatcccgcc 857 |||||| || || || |||||||||||||| ||||||||||| |||||| | ||||| | Sbjct: 16547381 ccttcggcgtcgtccttctggagctcatcacaggccggaagcctgtcgactcgtcccgtc 16547440 Query: 858 ccctcggcgacgagagcctcgtggagtgg 886 |||||||||| |||||||||||||||||| Sbjct: 16547441 ccctcggcgatgagagcctcgtggagtgg 16547469 Score = 99.6 bits (50), Expect = 2e-17 Identities = 77/86 (89%) Strand = Plus / Plus Query: 402 gggaggggaaggccggtgatggactggccgacgagggtgaagatcgcggcgggatcggcg 461 |||||||||||||||||||||||||||||||||||||| |||||||| || || || || Sbjct: 16546766 gggaggggaaggccggtgatggactggccgacgagggtcaagatcgccgccggctcagca 16546825 Query: 462 cgtgggttggcctacctgcacgagga 487 || || |||||||||||||| ||||| Sbjct: 16546826 cgcggattggcctacctgcatgagga 16546851 Score = 65.9 bits (33), Expect = 3e-07 Identities = 45/49 (91%) Strand = Plus / Plus Query: 490 gtcatccaaggatcatccacggggacatcaagtcatccaacatccttct 538 |||||||||| ||||||||| ||||||| |||||||| ||||||||||| Sbjct: 16546958 gtcatccaagaatcatccacagggacataaagtcatcaaacatccttct 16547006 Score = 65.9 bits (33), Expect = 3e-07 Identities = 60/69 (86%) Strand = Plus / Plus Query: 573 gggctcgccaggctcgcggagaacgacatgacgcacatctcgatgcgtgtgatgggcaca 632 ||||| |||||||| || ||||||||| | || ||| |||||| |||||||||||||||| Sbjct: 16547157 gggcttgccaggctggctgagaacgacgtcacccacgtctcgacgcgtgtgatgggcaca 16547216 Query: 633 ttcgggtaa 641 || |||||| Sbjct: 16547217 tttgggtaa 16547225 Score = 58.0 bits (29), Expect = 7e-05 Identities = 89/109 (81%) Strand = Plus / Plus Query: 768 ggaagctgacggagaaatcagacgtgttcttcttcggggtggtgctcctggagctcatca 827 |||||||| | |||||||||||| |||||| ||||| || || || |||||||||||| Sbjct: 16552257 ggaagctggccgagaaatcagacatgttctctttcggcgtcgttcttatggagctcatca 16552316 Query: 828 ccggccggaagcccgtcgacacatcccgccccctcggcgacgagagcct 876 | || ||||||| |||||| | ||||| || |||||| | |||||||| Sbjct: 16552317 caggttggaagcctgtcgactcgtcccgtcctctcggcaatgagagcct 16552365 Score = 58.0 bits (29), Expect = 7e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 498 aggatcatccacggggacatcaagtcatccaacatccttctcaacgacaactt 550 |||||||||||| ||||||||||| |||||||| | ||||||| |||| |||| Sbjct: 28558524 aggatcatccacagggacatcaaggcatccaacgtgcttctcaccgacgactt 28558576 Score = 48.1 bits (24), Expect = 0.068 Identities = 33/36 (91%) Strand = Plus / Minus Query: 500 gatcatccacggggacatcaagtcatccaacatcct 535 |||||||||||||||||||||| ||||||||||| Sbjct: 2661061 gatcatccacggggacatcaagctgtccaacatcct 2661026 Score = 44.1 bits (22), Expect = 1.1 Identities = 25/26 (96%) Strand = Plus / Minus Query: 815 ctggagctcatcaccggccggaagcc 840 |||||||||||||||||||| ||||| Sbjct: 16362186 ctggagctcatcaccggccgcaagcc 16362161 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 337 gagaggaggaagaagaagaac 357 ||||||||||||||||||||| Sbjct: 8419299 gagaggaggaagaagaagaac 8419319 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 417 gtgatggactggccgacgagg 437 ||||||||||||||||||||| Sbjct: 16362685 gtgatggactggccgacgagg 16362665 Score = 42.1 bits (21), Expect = 4.2 Identities = 30/33 (90%) Strand = Plus / Minus Query: 799 cttcggggtggtgctcctggagctcatcaccgg 831 |||||| |||||||| |||||||||||||||| Sbjct: 29954692 cttcggtgtggtgctattggagctcatcaccgg 29954660
>dbj|AP004728.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0583E12 Length = 152449 Score = 137 bits (69), Expect = 1e-28 Identities = 129/149 (86%) Strand = Plus / Plus Query: 738 ggtacttggcgccggagtacgcctcgacggggaagctgacggagaaatcagacgtgttct 797 |||||||||| || ||||| || || || || |||||||| |||||||| |||||||||| Sbjct: 43301 ggtacttggctccagagtatgcatccacaggaaagctgaccgagaaatcggacgtgttct 43360 Query: 798 tcttcggggtggtgctcctggagctcatcaccggccggaagcccgtcgacacatcccgcc 857 |||||| || || || |||||||||||||| ||||||||||| |||||| | ||||| | Sbjct: 43361 ccttcggcgtcgtccttctggagctcatcacaggccggaagcctgtcgactcgtcccgtc 43420 Query: 858 ccctcggcgacgagagcctcgtggagtgg 886 |||||||||| |||||||||||||||||| Sbjct: 43421 ccctcggcgatgagagcctcgtggagtgg 43449 Score = 99.6 bits (50), Expect = 2e-17 Identities = 77/86 (89%) Strand = Plus / Plus Query: 402 gggaggggaaggccggtgatggactggccgacgagggtgaagatcgcggcgggatcggcg 461 |||||||||||||||||||||||||||||||||||||| |||||||| || || || || Sbjct: 42746 gggaggggaaggccggtgatggactggccgacgagggtcaagatcgccgccggctcagca 42805 Query: 462 cgtgggttggcctacctgcacgagga 487 || || |||||||||||||| ||||| Sbjct: 42806 cgcggattggcctacctgcatgagga 42831 Score = 65.9 bits (33), Expect = 3e-07 Identities = 45/49 (91%) Strand = Plus / Plus Query: 490 gtcatccaaggatcatccacggggacatcaagtcatccaacatccttct 538 |||||||||| ||||||||| ||||||| |||||||| ||||||||||| Sbjct: 42938 gtcatccaagaatcatccacagggacataaagtcatcaaacatccttct 42986 Score = 65.9 bits (33), Expect = 3e-07 Identities = 60/69 (86%) Strand = Plus / Plus Query: 573 gggctcgccaggctcgcggagaacgacatgacgcacatctcgatgcgtgtgatgggcaca 632 ||||| |||||||| || ||||||||| | || ||| |||||| |||||||||||||||| Sbjct: 43137 gggcttgccaggctggctgagaacgacgtcacccacgtctcgacgcgtgtgatgggcaca 43196 Query: 633 ttcgggtaa 641 || |||||| Sbjct: 43197 tttgggtaa 43205 Score = 58.0 bits (29), Expect = 7e-05 Identities = 89/109 (81%) Strand = Plus / Plus Query: 768 ggaagctgacggagaaatcagacgtgttcttcttcggggtggtgctcctggagctcatca 827 |||||||| | |||||||||||| |||||| ||||| || || || |||||||||||| Sbjct: 48237 ggaagctggccgagaaatcagacatgttctctttcggcgtcgttcttatggagctcatca 48296 Query: 828 ccggccggaagcccgtcgacacatcccgccccctcggcgacgagagcct 876 | || ||||||| |||||| | ||||| || |||||| | |||||||| Sbjct: 48297 caggttggaagcctgtcgactcgtcccgtcctctcggcaatgagagcct 48345
>gb|AY641412.1| Hordeum vulgare subsp. vulgare retrotransposon Sandra5, complete sequence; splicing factor SF2-like protein (SF2) and universal stress protein (USP1) genes and Hv receptor-kinase-like pseudogene, complete cds; and retrotransposons Sandra6 and Sandra7, complete sequence Length = 82293 Score = 133 bits (67), Expect = 1e-27 Identities = 93/99 (93%), Gaps = 2/99 (2%) Strand = Plus / Minus Query: 999 attatgccctaga-ggcaataataaatatagttattattataattcctgtatcaagataa 1057 ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 67182 attatgccctagaaggcaataataaatatagttattattataattcctgtatc-agataa 67124 Query: 1058 tcgttcattatccatgctataattgtattgaatgaagac 1096 | ||| ||| |||||| |||||||||||||||||||||| Sbjct: 67123 tagtttattgtccatggtataattgtattgaatgaagac 67085
>emb|Z84542.1|HV1RC12DL H.vulgare BARE-1 long terminal repeat DNA; ID 1RC12DEL Length = 652 Score = 131 bits (66), Expect = 6e-27 Identities = 97/106 (91%), Gaps = 1/106 (0%) Strand = Plus / Plus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 1050 ||||||||||||||||||||||||||| ||||||| || |||||||||||||| |||||| Sbjct: 515 ctgttggaattatgccctagaggcaatgataaata-agatattattataattcgtgtatc 573 Query: 1051 aagataatcgttcattatccatgctataattgtattgaatgaagac 1096 ||||||||||| ||||| ||||||||||||||||| |||| |||| Sbjct: 574 gagataatcgtttattattcatgctataattgtattaaatggagac 619
>emb|Z84549.1|HV7RC H.vulgare BARE-1 long terminal repeat DNA; ID 7RC Length = 609 Score = 129 bits (65), Expect = 2e-26 Identities = 94/101 (93%), Gaps = 2/101 (1%) Strand = Plus / Plus Query: 996 ggaattatgccctagaggcaataataaatatagttattattataattcctgtatcaagat 1055 ||||||||||| |||||||||| ||||||| | ||||||||||||||| ||||||||||| Sbjct: 17 ggaattatgcc-tagaggcaatgataaata-atttattattataattcatgtatcaagat 74 Query: 1056 aatcgttcattatccatgctataattgtattgaatgaagac 1096 ||||||| |||||||||||||||||||| |||||||||||| Sbjct: 75 aatcgtttattatccatgctataattgtgttgaatgaagac 115
>gb|AY013246.1| Hordeum vulgare chromosome 5 BAC 635P2, complete sequence Length = 102433 Score = 127 bits (64), Expect = 9e-26 Identities = 94/103 (91%), Gaps = 2/103 (1%) Strand = Plus / Plus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 1050 ||||||||| ||||||||| ||||||| ||||||| |||||||||||| ||||||| | Sbjct: 50289 ctgttggaaatatgccctaaaggcaatgataaata--gttattattatatttcctgttta 50346 Query: 1051 aagataatcgttcattatccatgctataattgtattgaatgaa 1093 |||||||||||| |||||||||||||||||||||||||||||| Sbjct: 50347 aagataatcgtttattatccatgctataattgtattgaatgaa 50389 Score = 125 bits (63), Expect = 4e-25 Identities = 93/102 (91%), Gaps = 2/102 (1%) Strand = Plus / Plus Query: 992 tgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatca 1051 |||||||| ||||||||||||||||| ||||||| |||||||||||| ||||||| | | Sbjct: 43177 tgttggaaatatgccctagaggcaatgataaata--gttattattatatttcctgtttaa 43234 Query: 1052 agataatcgttcattatccatgctataattgtattgaatgaa 1093 ||||||| ||| |||||||||||||||||||||||||||||| Sbjct: 43235 agataattgtttattatccatgctataattgtattgaatgaa 43276 Score = 107 bits (54), Expect = 9e-20 Identities = 88/98 (89%), Gaps = 1/98 (1%) Strand = Plus / Minus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 1050 ||||||||| ||||||||||||||||| |||||| |||||||||||||| ||| | || Sbjct: 59795 ctgttggaaatatgccctagaggcaattataaat-tagttattattatatttctttgttc 59737 Query: 1051 aagataatcgttcattatccatgctataattgtattga 1088 | |||||||||| ||||||||||||||||||||||||| Sbjct: 59736 atgataatcgtttattatccatgctataattgtattga 59699 Score = 99.6 bits (50), Expect = 2e-17 Identities = 87/98 (88%), Gaps = 1/98 (1%) Strand = Plus / Minus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 1050 |||||| || |||||||||||||||||||||||| |||||||||||||| || | || Sbjct: 53027 ctgttgtaaatatgccctagaggcaataataaat-tagttattattatatttatttgttc 52969 Query: 1051 aagataatcgttcattatccatgctataattgtattga 1088 | |||||||||| ||||||||||||||||||||||||| Sbjct: 52968 atgataatcgtttattatccatgctataattgtattga 52931
>gb|DQ267106.1| Triticum urartu clone BAC 210J24 chromosome 4A, complete sequence Length = 111912 Score = 121 bits (61), Expect = 6e-24 Identities = 89/97 (91%), Gaps = 1/97 (1%) Strand = Plus / Plus Query: 992 tgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatca 1051 |||||||| |||||||||||||||||||||||| |||||||||||||| ||||| ||| Sbjct: 19422 tgttggaaatatgccctagaggcaataataaat-tagttattattatatttccttgttca 19480 Query: 1052 agataatcgttcattatccatgctataattgtattga 1088 |||||||||| ||||||||||||||||||||||||| Sbjct: 19481 tgataatcgtttattatccatgctataattgtattga 19517 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Plus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 41082 ggaaatatgccctagaggcaataataaa 41109 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Plus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 44409 ggaactatgccctagaggcaataataaa 44436 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Plus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 99784 ggaaatatgccctagaggcaataataaa 99811
>emb|Y18774.2|HROY18774 Hordeum roshevitzii BARE-1 long terminal repeat DNA (HROSC) Length = 1797 Score = 121 bits (61), Expect = 6e-24 Identities = 88/97 (90%) Strand = Plus / Plus Query: 992 tgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatca 1051 |||||||||||||||||||||||||| ||||| |||||||||||||| ||||| ||| Sbjct: 3 tgttggaattatgccctagaggcaatgataaaagtagttattattatatttccttattca 62 Query: 1052 agataatcgttcattatccatgctataattgtattga 1088 |||||||||| ||||||||||||||||||||||||| Sbjct: 63 tgataatcgtttattatccatgctataattgtattga 99
>emb|Y18772.2|HROY18772 Hordeum roshevitzii BARE-1 long terminal repeat DNA (HROSA) Length = 1740 Score = 121 bits (61), Expect = 6e-24 Identities = 88/97 (90%) Strand = Plus / Plus Query: 992 tgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatca 1051 |||||||||||||||||||||||||| ||||| |||||||||||||| ||||| ||| Sbjct: 3 tgttggaattatgccctagaggcaatgataaaagtagttattattatatttccttgttca 62 Query: 1052 agataatcgttcattatccatgctataattgtattga 1088 |||||||||| ||||||||||||||||||||||||| Sbjct: 63 tgataatcgtttattatccatgctataattgtattga 99
>emb|Y18771.2|HVUY18771 Hordeum vulgare BARE-1 long terminal repeat DNA (HVULE) Length = 1812 Score = 119 bits (60), Expect = 2e-23 Identities = 93/103 (90%), Gaps = 2/103 (1%) Strand = Plus / Plus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 1050 ||||||||||||||||||||||||||| ||||||| |||||||||||| ||| ||| | Sbjct: 2 ctgttggaattatgccctagaggcaatgataaata--gttattattatatttcatgttta 59 Query: 1051 aagataatcgttcattatccatgctataattgtattgaatgaa 1093 |||||| ||||| |||||||||||||||||| ||||||||||| Sbjct: 60 aagatagtcgtttattatccatgctataattctattgaatgaa 102
>gb|AF521177.1| Hordeum vulgare contig 211252, complete sequence Length = 211664 Score = 115 bits (58), Expect = 4e-22 Identities = 89/98 (90%), Gaps = 1/98 (1%) Strand = Plus / Minus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 1050 ||||||||| |||||||||||||||||||||||| |||||||||||||| ||| | || Sbjct: 96766 ctgttggaaatatgccctagaggcaataataaat-tagttattattatatttcttagttc 96708 Query: 1051 aagataatcgttcattatccatgctataattgtattga 1088 | |||||||||| ||||||||||||||||||||||||| Sbjct: 96707 atgataatcgtttattatccatgctataattgtattga 96670 Score = 115 bits (58), Expect = 4e-22 Identities = 89/98 (90%), Gaps = 1/98 (1%) Strand = Plus / Minus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 1050 ||||||||| |||||||||||||||||||||||| |||||||||||||| ||| | || Sbjct: 103562 ctgttggaaatatgccctagaggcaataataaat-tagttattattatatttcttagttc 103504 Query: 1051 aagataatcgttcattatccatgctataattgtattga 1088 | |||||||||| ||||||||||||||||||||||||| Sbjct: 103503 atgataatcgtttattatccatgctataattgtattga 103466 Score = 109 bits (55), Expect = 2e-20 Identities = 89/99 (89%), Gaps = 1/99 (1%) Strand = Plus / Minus Query: 990 tctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtat 1049 |||||||||| |||||||||||||||||||||||| ||||||||||||| ||| | | Sbjct: 145431 tctgttggaaatatgccctagaggcaataataaat-tagttattattatgtttctttgtt 145373 Query: 1050 caagataatcgttcattatccatgctataattgtattga 1088 || |||||||||| ||||||||||||||||||||||||| Sbjct: 145372 catgataatcgtttattatccatgctataattgtattga 145334 Score = 75.8 bits (38), Expect = 3e-10 Identities = 81/94 (86%), Gaps = 1/94 (1%) Strand = Plus / Plus Query: 995 tggaattatgccctagaggcaataataaatatagttattattataattcctgtatcaaga 1054 ||||| ||| ||||||| |||||||||||| |||||||||||||| || || ||| || Sbjct: 46934 tggaaatataccctagatgcaataataaat-tagttattattatattttcttgttcatga 46992 Query: 1055 taatcgttcattatccatgctataattgtattga 1088 |||||| | ||||||||||||| ||||||||||| Sbjct: 46993 taatcggttattatccatgctagaattgtattga 47026
>gb|AF474072.1| Hordeum vulgare sp. vulgare cultivar Morex BAC clone 773k14, complete sequence Length = 113510 Score = 115 bits (58), Expect = 4e-22 Identities = 89/98 (90%), Gaps = 1/98 (1%) Strand = Plus / Minus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 1050 ||||||||| |||||||||||||||||||||||| |||||||||||||| ||| | || Sbjct: 67581 ctgttggaaatatgccctagaggcaataataaat-tagttattattatatttcttagttc 67523 Query: 1051 aagataatcgttcattatccatgctataattgtattga 1088 | |||||||||| ||||||||||||||||||||||||| Sbjct: 67522 atgataatcgtttattatccatgctataattgtattga 67485 Score = 113 bits (57), Expect = 1e-21 Identities = 88/97 (90%), Gaps = 1/97 (1%) Strand = Plus / Minus Query: 992 tgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatca 1051 |||||||| |||||||||||||||||||||||| |||||||||||||| ||| | ||| Sbjct: 74370 tgttggaaatatgccctagaggcaataataaat-tagttattattatatttcttagttca 74312 Query: 1052 agataatcgttcattatccatgctataattgtattga 1088 |||||||||| ||||||||||||||||||||||||| Sbjct: 74311 tgataatcgtttattatccatgctataattgtattga 74275 Score = 101 bits (51), Expect = 5e-18 Identities = 87/98 (88%), Gaps = 2/98 (2%) Strand = Plus / Minus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 1050 ||||||||| |||||||||||||||||||||| || |||||||||||| ||| | || Sbjct: 109534 ctgttggaaatatgccctagaggcaataataatta--gttattattatatttctttgttc 109477 Query: 1051 aagataatcgttcattatccatgctataattgtattga 1088 | |||||||||| ||||||||||||||||||||||||| Sbjct: 109476 atgataatcgtttattatccatgctataattgtattga 109439 Score = 48.1 bits (24), Expect = 0.068 Identities = 79/96 (82%), Gaps = 1/96 (1%) Strand = Plus / Plus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 1050 ||||| ||| ||||||||| || |||||||||| | ||||||||||| ||||| || Sbjct: 22914 ctgtttgaaatatgccctaaagtcaataataaag-tgtttattattatatttcctagttc 22972 Query: 1051 aagataatcgttcattatccatgctataattgtatt 1086 | |||||| || ||||| ||||||||||||||||| Sbjct: 22973 atgataattgtctattattcatgctataattgtatt 23008
>gb|DQ249273.1| Hordeum vulgare subsp. vulgare cultivar Morex BAC 631P8, complete sequence Length = 101158 Score = 113 bits (57), Expect = 1e-21 Identities = 88/97 (90%), Gaps = 1/97 (1%) Strand = Plus / Minus Query: 992 tgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatca 1051 |||||||| |||||||||||||||||||||||| |||||||||||||| ||| | ||| Sbjct: 34785 tgttggaaatatgccctagaggcaataataaat-tagttattattatatttcttagttca 34727 Query: 1052 agataatcgttcattatccatgctataattgtattga 1088 |||||||||| ||||||||||||||||||||||||| Sbjct: 34726 tgataatcgtttattatccatgctataattgtattga 34690 Score = 61.9 bits (31), Expect = 5e-06 Identities = 81/95 (85%), Gaps = 2/95 (2%) Strand = Plus / Plus Query: 992 tgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatca 1051 |||||||| |||||||||| |||||||||||| | |||||||||||| |||| || ||| Sbjct: 96267 tgttggaaatatgccctagtggcaataataaa-gttgttattattatatttccagt-tca 96324 Query: 1052 agataatcgttcattatccatgctataattgtatt 1086 |||||| || ||||| ||||| ||||||||||| Sbjct: 96325 tgataattgtctattattcatgcgataattgtatt 96359
>gb|AY663391.1| Triticum turgidum cultivar Langdon clone BAC 1156G16, complete sequence Length = 187012 Score = 113 bits (57), Expect = 1e-21 Identities = 88/97 (90%), Gaps = 1/97 (1%) Strand = Plus / Minus Query: 992 tgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatca 1051 |||||||| |||||||||||||||||||||||| |||||||||||||| ||||| ||| Sbjct: 89472 tgttggaaatatgccctagaggcaataataaat-tagttattattatatttccttgttca 89414 Query: 1052 agataatcgttcattatccatgctataattgtattga 1088 |||||||||| ||||||||||||| ||||||||||| Sbjct: 89413 tgataatcgtttattatccatgctagaattgtattga 89377 Score = 58.0 bits (29), Expect = 7e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 991 ctgttggaattatgccctagaggcaataataaa 1023 ||||||||| ||||||||||||||||||||||| Sbjct: 5512 ctgttggaaatatgccctagaggcaataataaa 5480 Score = 56.0 bits (28), Expect = 3e-04 Identities = 31/32 (96%) Strand = Plus / Minus Query: 992 tgttggaattatgccctagaggcaataataaa 1023 |||||||| ||||||||||||||||||||||| Sbjct: 14042 tgttggaaatatgccctagaggcaataataaa 14011 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Minus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 9841 ggaaatatgccctagaggcaataataaa 9814 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Minus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 58755 ggaaatatgccctagaggcaataataaa 58728 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Plus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 97317 ggaaatatgccctagaggcaataataaa 97344 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Plus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 104150 ggaaatatgccctagaggcaataataaa 104177 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Minus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 155450 ggaaatatgccctagaggcaataataaa 155423 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Minus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 171962 ggaaatatgccctagaggcaataataaa 171935 Score = 46.1 bits (23), Expect = 0.27 Identities = 23/23 (100%) Strand = Plus / Minus Query: 1001 tatgccctagaggcaataataaa 1023 ||||||||||||||||||||||| Sbjct: 54351 tatgccctagaggcaataataaa 54329
>emb|Y18779.2|HMAY18779 Hordeum marinum BARE-1 long terminal repeat DNA (HMARD) Length = 1968 Score = 113 bits (57), Expect = 1e-21 Identities = 88/97 (90%), Gaps = 1/97 (1%) Strand = Plus / Plus Query: 992 tgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatca 1051 |||||||||||||||||||||||||| |||||| |||||||||| ||| ||||| ||| Sbjct: 3 tgttggaattatgccctagaggcaatgataaat-tagttattatcatatttccttgttca 61 Query: 1052 agataatcgttcattatccatgctataattgtattga 1088 |||||||||| ||||||||||||||||||||||||| Sbjct: 62 tgataatcgtttattatccatgctataattgtattga 98
>emb|Y18777.2|HMAY18777 Hordeum marinum BARE-1 long terminal repeat DNA (HMARB) Length = 1975 Score = 113 bits (57), Expect = 1e-21 Identities = 88/97 (90%), Gaps = 1/97 (1%) Strand = Plus / Plus Query: 992 tgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatca 1051 |||||||||||||||||||||||||| |||||| |||||||||| ||| ||||| || | Sbjct: 3 tgttggaattatgccctagaggcaatgataaat-tagttattatcatatttccttgatta 61 Query: 1052 agataatcgttcattatccatgctataattgtattga 1088 |||||||||| ||||||||||||||||||||||||| Sbjct: 62 tgataatcgtttattatccatgctataattgtattga 98
>gb|DQ871219.1| Triticum turgidum subsp. dicoccoides clones BAC 409D13 and BAC 916O17, complete sequence Length = 245486 Score = 109 bits (55), Expect = 2e-20 Identities = 86/95 (90%), Gaps = 1/95 (1%) Strand = Plus / Minus Query: 992 tgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatca 1051 |||||||| |||||||||||||||||| ||||| |||||||||||||| ||||| ||| Sbjct: 65549 tgttggaaatatgccctagaggcaatagtaaat-tagttattattatatttccttgttca 65491 Query: 1052 agataatcgttcattatccatgctataattgtatt 1086 |||||||||| ||||||||||||||||||||||| Sbjct: 65490 tgataatcgtttattatccatgctataattgtatt 65456 Score = 103 bits (52), Expect = 1e-18 Identities = 86/96 (89%), Gaps = 1/96 (1%) Strand = Plus / Minus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 1050 ||||||||| |||||||||||||||||||||||| |||||||||||||| ||||| || Sbjct: 60086 ctgttggaaatatgccctagaggcaataataaat-tagttattattatatttccttgttc 60028 Query: 1051 aagataatcgttcattatccatgctataattgtatt 1086 | ||||||| || |||||||| |||||||||||||| Sbjct: 60027 atgataatcatttattatccacgctataattgtatt 59992 Score = 63.9 bits (32), Expect = 1e-06 Identities = 81/96 (84%), Gaps = 1/96 (1%) Strand = Plus / Minus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 1050 ||||||||| ||||||||||||||||||||||| || ||||||||||| ||||| || Sbjct: 198136 ctgttggaaatatgccctagaggcaataataaaagta-ttattattatatttccttgttc 198078 Query: 1051 aagataatcgttcattatccatgctataattgtatt 1086 | |||||| || |||| |||||||||| |||||| Sbjct: 198077 atgataattgtcttttattcatgctataactgtatt 198042 Score = 63.9 bits (32), Expect = 1e-06 Identities = 81/96 (84%), Gaps = 1/96 (1%) Strand = Plus / Minus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 1050 ||||||||| ||||||||||||||||||||||| || ||||||||||| ||||| || Sbjct: 204903 ctgttggaaatatgccctagaggcaataataaaagta-ttattattatatttccttgttc 204845 Query: 1051 aagataatcgttcattatccatgctataattgtatt 1086 | |||||| || |||| |||||||||| |||||| Sbjct: 204844 atgataattgtcttttattcatgctataactgtatt 204809 Score = 58.0 bits (29), Expect = 7e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 991 ctgttggaattatgccctagaggcaataataaa 1023 ||||||||| ||||||||||||||||||||||| Sbjct: 19442 ctgttggaaatatgccctagaggcaataataaa 19410 Score = 56.0 bits (28), Expect = 3e-04 Identities = 31/32 (96%) Strand = Plus / Minus Query: 992 tgttggaattatgccctagaggcaataataaa 1023 |||||||| ||||||||||||||||||||||| Sbjct: 26476 tgttggaaatatgccctagaggcaataataaa 26445 Score = 56.0 bits (28), Expect = 3e-04 Identities = 31/32 (96%) Strand = Plus / Minus Query: 992 tgttggaattatgccctagaggcaataataaa 1023 |||||||| ||||||||||||||||||||||| Sbjct: 210162 tgttggaaatatgccctagaggcaataataaa 210131 Score = 42.1 bits (21), Expect = 4.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 996 ggaattatgccctagaggcaataataaat 1024 |||| ||| |||||||||||||||||||| Sbjct: 212383 ggaaatataccctagaggcaataataaat 212411
>emb|Z84565.1|HV1334QRC H.vulgare BARE-1 long terminal repeat DNA; ID E1334QRC Length = 489 Score = 109 bits (55), Expect = 2e-20 Identities = 91/102 (89%), Gaps = 2/102 (1%) Strand = Plus / Plus Query: 992 tgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatca 1051 |||||||| ||||||||||||||||| ||||||| |||||||||||| ||| ||| | | Sbjct: 308 tgttggaaatatgccctagaggcaatgataaata--gttattattatatttcatgtttaa 365 Query: 1052 agataatcgttcattatccatgctataattgtattgaatgaa 1093 ||||||||||| |||||| |||||||||||||||||||||| Sbjct: 366 agataatcgtttattatcagtgctataattgtattgaatgaa 407
>gb|AF153326.1| Secale cereale cv. Ailes clone F20 hypervariable DNA sequence Length = 719 Score = 107 bits (54), Expect = 9e-20 Identities = 88/98 (89%), Gaps = 1/98 (1%) Strand = Plus / Plus Query: 992 tgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatca 1051 |||||||| |||||||||||||||||||||||| | |||||||||||| ||||| ||| Sbjct: 555 tgttggaaatatgccctagaggcaataataaat-tggttattattatatttccttgttca 613 Query: 1052 agataatcgttcattatccatgctataattgtattgaa 1089 |||||||||| ||||||||||||| |||||||||||| Sbjct: 614 cgataatcgtttattatccatgctagaattgtattgaa 651
>emb|Y18773.2|HROY18773 Hordeum roshevitzii BARE-1 long terminal repeat DNA (HROSB) Length = 1901 Score = 107 bits (54), Expect = 9e-20 Identities = 88/98 (89%), Gaps = 1/98 (1%) Strand = Plus / Plus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 1050 ||||||||||||||||||||||||||| |||| | |||||||||| ||| ||||| || Sbjct: 2 ctgttggaattatgccctagaggcaatgataatt-tagttattatcatatttccttggtc 60 Query: 1051 aagataatcgttcattatccatgctataattgtattga 1088 | |||||||||| ||||||||||||||||||||||||| Sbjct: 61 atgataatcgtttattatccatgctataattgtattga 98
>emb|AJ279072.1|HVU279072 Hordeum vulgare BARE-2 and partial BAGY-2 retrotransposons Length = 19906 Score = 107 bits (54), Expect = 9e-20 Identities = 85/94 (90%), Gaps = 1/94 (1%) Strand = Plus / Plus Query: 995 tggaattatgccctagaggcaataataaatatagttattattataattcctgtatcaaga 1054 ||||| |||||||||||||||||||||||| |||||||||||||| ||| | ||| || Sbjct: 3573 tggaaatatgccctagaggcaataataaat-tagttattattatatttcttagttcatga 3631 Query: 1055 taatcgttcattatccatgctataattgtattga 1088 |||||||| ||||||||||||||||||||||||| Sbjct: 3632 taatcgtttattatccatgctataattgtattga 3665 Score = 107 bits (54), Expect = 9e-20 Identities = 88/98 (89%), Gaps = 1/98 (1%) Strand = Plus / Plus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 1050 ||||||||| ||| |||||||||||||||||||| |||||||||||||| ||| | || Sbjct: 10374 ctgttggaaatattccctagaggcaataataaat-tagttattattatatttcttagttc 10432 Query: 1051 aagataatcgttcattatccatgctataattgtattga 1088 | |||||||||| ||||||||||||||||||||||||| Sbjct: 10433 atgataatcgtttattatccatgctataattgtattga 10470
>gb|AY146587.1| Triticum turgidum subsp. durum BAC 107G22, complete sequence Length = 142018 Score = 105 bits (53), Expect = 3e-19 Identities = 87/97 (89%), Gaps = 1/97 (1%) Strand = Plus / Minus Query: 992 tgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatca 1051 |||||||| ||||| ||||||||||||| |||| |||||||||||||| ||||| ||| Sbjct: 51570 tgttggaaatatgctctagaggcaataacaaat-tagttattattatatttccttgttca 51512 Query: 1052 agataatcgttcattatccatgctataattgtattga 1088 |||||||||| ||||||||||||||||||||||||| Sbjct: 51511 tgataatcgtttattatccatgctataattgtattga 51475 Score = 99.6 bits (50), Expect = 2e-17 Identities = 87/98 (88%), Gaps = 1/98 (1%) Strand = Plus / Minus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 1050 ||||||||| ||||| ||||||||||||| |||| |||||||||||||| ||||| || Sbjct: 44661 ctgttggaaatatgctctagaggcaataacaaat-tagttattattatatttccttgttc 44603 Query: 1051 aagataatcgttcattatccatgctataattgtattga 1088 | ||||||||| ||||||||||||||||||||||||| Sbjct: 44602 attataatcgtttattatccatgctataattgtattga 44565 Score = 61.9 bits (31), Expect = 5e-06 Identities = 80/96 (83%), Gaps = 4/96 (4%) Strand = Plus / Minus Query: 992 tgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatca 1051 |||||||| |||||||||||||||||||||| | | ||||||||| ||||| ||| Sbjct: 57167 tgttggaaatatgccctagaggcaataataa----aatgattattatatttccttgttca 57112 Query: 1052 agataatcgttcattatccatgctataattgtattg 1087 |||||| || ||||| |||||||||||||||||| Sbjct: 57111 tgataattgtctattattcatgctataattgtattg 57076 Score = 56.0 bits (28), Expect = 3e-04 Identities = 31/32 (96%) Strand = Plus / Minus Query: 992 tgttggaattatgccctagaggcaataataaa 1023 |||||||| ||||||||||||||||||||||| Sbjct: 62988 tgttggaaatatgccctagaggcaataataaa 62957 Score = 50.1 bits (25), Expect = 0.017 Identities = 77/94 (81%), Gaps = 4/94 (4%) Strand = Plus / Minus Query: 994 ttggaattatgccctagaggcaataataaatatagttattattataattcctgtatcaag 1053 |||||| ||| |||||||||||||||||| | | ||||||||| ||||| ||| | Sbjct: 41792 ttggaaatattccctagaggcaataataa----aatgattattatatttccttgttcatg 41737 Query: 1054 ataatcgttcattatccatgctataattgtattg 1087 ||||| || ||||| |||||||||||||||||| Sbjct: 41736 ataattgtctattattcatgctataattgtattg 41703 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Plus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 4410 ggaaatatgccctagaggcaataataaa 4437 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Plus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 11399 ggaaatatgccctagaggcaataataaa 11426
>emb|Y18781.2|HEUY18781 Hordeum euclaston BARE-1 long terminal repeat DNA (HEUCB) Length = 1782 Score = 105 bits (53), Expect = 3e-19 Identities = 87/97 (89%), Gaps = 1/97 (1%) Strand = Plus / Plus Query: 992 tgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatca 1051 |||||||||||||||||||||||||| |||| | |||||||||| ||| ||||| ||| Sbjct: 3 tgttggaattatgccctagaggcaatgataatt-tagttattatcatatttccttgttca 61 Query: 1052 agataatcgttcattatccatgctataattgtattga 1088 |||||||||| ||||||||||||||||||||||||| Sbjct: 62 tgataatcgtttattatccatgctataattgtattga 98
>gb|AF474071.1| Hordeum vulgare subsp. vulgare cultivar Morex BAC clone 745c13, complete sequence Length = 102842 Score = 103 bits (52), Expect = 1e-18 Identities = 91/103 (88%), Gaps = 2/103 (1%) Strand = Plus / Minus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 1050 ||||||| | |||||| |||||||||| ||||||| |||||||||||| ||| ||| | Sbjct: 71792 ctgttggtaatatgccttagaggcaattataaata--gttattattatatttcttgttta 71735 Query: 1051 aagataatcgttcattatccatgctataattgtattgaatgaa 1093 |||||||||||| |||||||||| ||||||||||||||||||| Sbjct: 71734 aagataatcgtttattatccatgttataattgtattgaatgaa 71692 Score = 99.6 bits (50), Expect = 2e-17 Identities = 86/97 (88%), Gaps = 2/97 (2%) Strand = Plus / Minus Query: 992 tgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatca 1051 |||||||| |||||||||||||||||||||| || |||||||||||| ||| | ||| Sbjct: 65369 tgttggaaatatgccctagaggcaataataatta--gttattattatatttctttgttca 65312 Query: 1052 agataatcgttcattatccatgctataattgtattga 1088 |||||||||| ||||||||||||||||||||||||| Sbjct: 65311 tgataatcgtttattatccatgctataattgtattga 65275 Score = 99.6 bits (50), Expect = 2e-17 Identities = 87/98 (88%), Gaps = 1/98 (1%) Strand = Plus / Plus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 1050 ||||| ||| |||||||||||||||||||||||| |||||||||||||| ||||| || Sbjct: 96938 ctgttagaaatatgccctagaggcaataataaat-tagttattattatatttccttgttc 96996 Query: 1051 aagataatcgttcattatccatgctataattgtattga 1088 | ||||||||| ||||||||||||| ||||||||||| Sbjct: 96997 ataataatcgtttattatccatgctagaattgtattga 97034 Score = 97.6 bits (49), Expect = 8e-17 Identities = 86/97 (88%), Gaps = 1/97 (1%) Strand = Plus / Plus Query: 992 tgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatca 1051 |||||||| |||||||||||||||||||||||| |||||||||||||| ||||| ||| Sbjct: 81782 tgttggaaatatgccctagaggcaataataaat-tagttattattatatttccttgttca 81840 Query: 1052 agataatcgttcattatccatgctataattgtattga 1088 ||||||||| |||||||||| || ||||||||||| Sbjct: 81841 caataatcgtttattatccatgatagaattgtattga 81877 Score = 93.7 bits (47), Expect = 1e-15 Identities = 86/98 (87%), Gaps = 2/98 (2%) Strand = Plus / Minus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 1050 ||||||||| ||||| |||||||||||||||| || |||||||||||| ||| | || Sbjct: 58597 ctgttggaaatatgctctagaggcaataataatta--gttattattatatttctttgttc 58540 Query: 1051 aagataatcgttcattatccatgctataattgtattga 1088 | |||||||||| ||||||||||||||||||||||||| Sbjct: 58539 atgataatcgtttattatccatgctataattgtattga 58502 Score = 77.8 bits (39), Expect = 8e-11 Identities = 82/95 (86%), Gaps = 1/95 (1%) Strand = Plus / Plus Query: 992 tgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatca 1051 |||||||| ||||||||||||||||||||||| || |||||||| ||| ||||| ||| Sbjct: 19516 tgttggaaatatgccctagaggcaataataaa-atggttattatcatatttccttgttca 19574 Query: 1052 agataatcgttcattatccatgctataattgtatt 1086 ||||||||| ||| | ||||||||||||||||| Sbjct: 19575 tgataatcgtctattgttcatgctataattgtatt 19609 Score = 61.9 bits (31), Expect = 5e-06 Identities = 41/43 (95%), Gaps = 1/43 (2%) Strand = Plus / Minus Query: 992 tgttggaattatgccctagaggcaataataaatatagttatta 1034 |||||||| |||||||||||||||||||||||| ||||||||| Sbjct: 34634 tgttggaaatatgccctagaggcaataataaat-tagttatta 34593 Score = 58.0 bits (29), Expect = 7e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 1054 ataatcgttcattatccatgctataattgtatt 1086 ||||||||| ||||||||||||||||||||||| Sbjct: 34490 ataatcgtttattatccatgctataattgtatt 34458 Score = 56.0 bits (28), Expect = 3e-04 Identities = 80/96 (83%), Gaps = 1/96 (1%) Strand = Plus / Plus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 1050 ||||||||| ||||||||||| ||||||||||| || |||||||| ||| ||||| || Sbjct: 26583 ctgttggaaatatgccctagacgcaataataaa-atggttattatcatatttccttcttc 26641 Query: 1051 aagataatcgttcattatccatgctataattgtatt 1086 | ||||||| | ||| | |||||||||||| |||| Sbjct: 26642 atgataatcatctattgttcatgctataattttatt 26677
>ref|NM_001057047.1| Oryza sativa (japonica cultivar-group) Os03g0568800 (Os03g0568800) mRNA, complete cds Length = 2465 Score = 101 bits (51), Expect = 5e-18 Identities = 93/107 (86%) Strand = Plus / Plus Query: 737 gggtacttggcgccggagtacgcctcgacggggaagctgacggagaaatcagacgtgttc 796 |||||| |||||||||||||||| || | |||||||||||||| | ||| |||||||| Sbjct: 1799 gggtacctggcgccggagtacgcatcaagcgggaagctgacggacagatcggacgtgttt 1858 Query: 797 ttcttcggggtggtgctcctggagctcatcaccggccggaagcccgt 843 | |||||||||||||| |||||||||||||||| ||||||||||| Sbjct: 1859 tcgttcggggtggtgctgttggagctcatcaccgggcggaagcccgt 1905 Score = 75.8 bits (38), Expect = 3e-10 Identities = 101/122 (82%) Strand = Plus / Plus Query: 453 ggatcggcgcgtgggttggcctacctgcacgaggactgtcatccaaggatcatccacggg 512 ||||| || ||||| ||| ||||||||||||| ||||| ||||| |||||||| || || Sbjct: 1616 ggatcagcccgtggtttgacctacctgcacgaagactgccatcctaggatcatacatagg 1675 Query: 513 gacatcaagtcatccaacatccttctcaacgacaacttagaagctcaggtcgcggatttc 572 ||||||||||| |||||||||| || | ||| ||| ||||| |||||||||||||| Sbjct: 1676 gacatcaagtcggccaacatcctcctggatgacgccttcgaagcaaaggtcgcggatttc 1735 Query: 573 gg 574 || Sbjct: 1736 gg 1737 Score = 46.1 bits (23), Expect = 0.27 Identities = 29/31 (93%) Strand = Plus / Plus Query: 610 tctcgatgcgtgtgatgggcacattcgggta 640 |||||| ||| |||||||||||||||||||| Sbjct: 1773 tctcgacgcgcgtgatgggcacattcgggta 1803
>dbj|AK099276.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023105H10, full insert sequence Length = 2393 Score = 101 bits (51), Expect = 5e-18 Identities = 93/107 (86%) Strand = Plus / Plus Query: 737 gggtacttggcgccggagtacgcctcgacggggaagctgacggagaaatcagacgtgttc 796 |||||| |||||||||||||||| || | |||||||||||||| | ||| |||||||| Sbjct: 1727 gggtacctggcgccggagtacgcatcaagcgggaagctgacggacagatcggacgtgttt 1786 Query: 797 ttcttcggggtggtgctcctggagctcatcaccggccggaagcccgt 843 | |||||||||||||| |||||||||||||||| ||||||||||| Sbjct: 1787 tcgttcggggtggtgctgttggagctcatcaccgggcggaagcccgt 1833 Score = 75.8 bits (38), Expect = 3e-10 Identities = 101/122 (82%) Strand = Plus / Plus Query: 453 ggatcggcgcgtgggttggcctacctgcacgaggactgtcatccaaggatcatccacggg 512 ||||| || ||||| ||| ||||||||||||| ||||| ||||| |||||||| || || Sbjct: 1544 ggatcagcccgtggtttgacctacctgcacgaagactgccatcctaggatcatacatagg 1603 Query: 513 gacatcaagtcatccaacatccttctcaacgacaacttagaagctcaggtcgcggatttc 572 ||||||||||| |||||||||| || | ||| ||| ||||| |||||||||||||| Sbjct: 1604 gacatcaagtcggccaacatcctcctggatgacgccttcgaagcaaaggtcgcggatttc 1663 Query: 573 gg 574 || Sbjct: 1664 gg 1665 Score = 46.1 bits (23), Expect = 0.27 Identities = 29/31 (93%) Strand = Plus / Plus Query: 610 tctcgatgcgtgtgatgggcacattcgggta 640 |||||| ||| |||||||||||||||||||| Sbjct: 1701 tctcgacgcgcgtgatgggcacattcgggta 1731
>dbj|AK070389.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023048I16, full insert sequence Length = 2466 Score = 101 bits (51), Expect = 5e-18 Identities = 93/107 (86%) Strand = Plus / Plus Query: 737 gggtacttggcgccggagtacgcctcgacggggaagctgacggagaaatcagacgtgttc 796 |||||| |||||||||||||||| || | |||||||||||||| | ||| |||||||| Sbjct: 1800 gggtacctggcgccggagtacgcatcaagcgggaagctgacggacagatcggacgtgttt 1859 Query: 797 ttcttcggggtggtgctcctggagctcatcaccggccggaagcccgt 843 | |||||||||||||| |||||||||||||||| ||||||||||| Sbjct: 1860 tcgttcggggtggtgctgttggagctcatcaccgggcggaagcccgt 1906 Score = 75.8 bits (38), Expect = 3e-10 Identities = 101/122 (82%) Strand = Plus / Plus Query: 453 ggatcggcgcgtgggttggcctacctgcacgaggactgtcatccaaggatcatccacggg 512 ||||| || ||||| ||| ||||||||||||| ||||| ||||| |||||||| || || Sbjct: 1617 ggatcagcccgtggtttgacctacctgcacgaagactgccatcctaggatcatacatagg 1676 Query: 513 gacatcaagtcatccaacatccttctcaacgacaacttagaagctcaggtcgcggatttc 572 ||||||||||| |||||||||| || | ||| ||| ||||| |||||||||||||| Sbjct: 1677 gacatcaagtcggccaacatcctcctggatgacgccttcgaagcaaaggtcgcggatttc 1736 Query: 573 gg 574 || Sbjct: 1737 gg 1738 Score = 46.1 bits (23), Expect = 0.27 Identities = 29/31 (93%) Strand = Plus / Plus Query: 610 tctcgatgcgtgtgatgggcacattcgggta 640 |||||| ||| |||||||||||||||||||| Sbjct: 1774 tctcgacgcgcgtgatgggcacattcgggta 1804
>emb|X05995.1|TAGLUIN1 Wheat Glu-Aly sublocus with Wis-2 insertion 5' end (0.8 kb Hind III fragment) Length = 794 Score = 101 bits (51), Expect = 5e-18 Identities = 87/98 (88%), Gaps = 1/98 (1%) Strand = Plus / Plus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 1050 ||||||||| |||||||||||||||||||||||| | ||||||||||| ||||| || Sbjct: 482 ctgttggaaatatgccctagaggcaataataaattga-ttattattatatttcctngttc 540 Query: 1051 aagataatcgttcattatccatgctataattgtattga 1088 | |||||||||| ||||||||||||| ||||||||||| Sbjct: 541 atgataatcgtttattatccatgctagaattgtattga 578
>gb|AY494981.1| Triticum turgidum A genome HMW glutenin A gene locus, sequence Length = 307015 Score = 99.6 bits (50), Expect = 2e-17 Identities = 87/98 (88%), Gaps = 1/98 (1%) Strand = Plus / Plus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 1050 ||||||||| |||||||||||||||||||||||| | ||||||||||| ||||| || Sbjct: 52701 ctgttggaaatatgccctagaggcaataataaattga-ttattattatatttccttgttc 52759 Query: 1051 aagataatcgttcattatccatgctataattgtattga 1088 | |||||||||| ||||||||||||| ||||||||||| Sbjct: 52760 atgataatcgtttattatccatgctagaattgtattga 52797 Score = 99.6 bits (50), Expect = 2e-17 Identities = 87/98 (88%), Gaps = 1/98 (1%) Strand = Plus / Plus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 1050 ||||||||| |||||||||||||||||||||||| | ||||||||||| ||||| || Sbjct: 59577 ctgttggaaatatgccctagaggcaataataaattga-ttattattatatttccttgttc 59635 Query: 1051 aagataatcgttcattatccatgctataattgtattga 1088 | |||||||||| ||||||||||||| ||||||||||| Sbjct: 59636 atgataatcgtttattatccatgctagaattgtattga 59673 Score = 58.0 bits (29), Expect = 7e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 991 ctgttggaattatgccctagaggcaataataaa 1023 ||||||||| ||||||||||||||||||||||| Sbjct: 39839 ctgttggaaatatgccctagaggcaataataaa 39871 Score = 56.0 bits (28), Expect = 3e-04 Identities = 31/32 (96%) Strand = Plus / Plus Query: 992 tgttggaattatgccctagaggcaataataaa 1023 |||||||| ||||||||||||||||||||||| Sbjct: 33695 tgttggaaatatgccctagaggcaataataaa 33726 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Plus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 259915 ggaaatatgccctagaggcaataataaa 259942 Score = 46.1 bits (23), Expect = 0.27 Identities = 26/27 (96%) Strand = Plus / Minus Query: 996 ggaattatgccctagaggcaataataa 1022 |||| |||||||||||||||||||||| Sbjct: 8311 ggaaatatgccctagaggcaataataa 8285
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 99.6 bits (50), Expect = 2e-17 Identities = 92/106 (86%) Strand = Plus / Plus Query: 738 ggtacttggcgccggagtacgcctcgacggggaagctgacggagaaatcagacgtgttct 797 ||||| |||||||||||||||| || | |||||||||||||| | ||| |||||||| | Sbjct: 20372075 ggtacctggcgccggagtacgcatcaagcgggaagctgacggacagatcggacgtgtttt 20372134 Query: 798 tcttcggggtggtgctcctggagctcatcaccggccggaagcccgt 843 |||||||||||||| |||||||||||||||| ||||||||||| Sbjct: 20372135 cgttcggggtggtgctgttggagctcatcaccgggcggaagcccgt 20372180 Score = 85.7 bits (43), Expect = 3e-13 Identities = 76/87 (87%) Strand = Plus / Minus Query: 737 gggtacttggcgccggagtacgcctcgacggggaagctgacggagaaatcagacgtgttc 796 |||||| |||||||||||||||| |||| ||||||||||||||||| || ||||||||| Sbjct: 31970296 gggtacctggcgccggagtacgcgtcgagcgggaagctgacggagaagtcggacgtgttc 31970237 Query: 797 ttcttcggggtggtgctcctggagctc 823 | || ||| ||| |||| ||||||||| Sbjct: 31970236 tcctacggcgtgatgctgctggagctc 31970210 Score = 56.0 bits (28), Expect = 3e-04 Identities = 70/84 (83%) Strand = Plus / Plus Query: 752 gagtacgcctcgacggggaagctgacggagaaatcagacgtgttcttcttcggggtggtg 811 |||||||| |||| || ||||||||||| ||||| ||||| |||| |||||| || || Sbjct: 6635228 gagtacgcgtcgagcggcaagctgacggacaaatcggacgtcttctccttcggcgtcatg 6635287 Query: 812 ctcctggagctcatcaccggccgg 835 || || ||||| |||||||||||| Sbjct: 6635288 ctgctcgagctgatcaccggccgg 6635311 Score = 48.1 bits (24), Expect = 0.068 Identities = 30/32 (93%) Strand = Plus / Plus Query: 610 tctcgatgcgtgtgatgggcacattcgggtaa 641 |||||| ||| ||||||||||||||||||||| Sbjct: 20371885 tctcgacgcgcgtgatgggcacattcgggtaa 20371916 Score = 44.1 bits (22), Expect = 1.1 Identities = 37/42 (88%) Strand = Plus / Minus Query: 799 cttcggggtggtgctcctggagctcatcaccggccggaagcc 840 ||||||||| ||||| |||||||||||| | || |||||||| Sbjct: 6772762 cttcggggtagtgctactggagctcatcgctgggcggaagcc 6772721 Score = 44.1 bits (22), Expect = 1.1 Identities = 49/58 (84%) Strand = Plus / Minus Query: 499 ggatcatccacggggacatcaagtcatccaacatccttctcaacgacaacttagaagc 556 ||||||||||| | |||||||| || |||||||||| ||| || ||||||| ||||| Sbjct: 31970533 ggatcatccaccgcgacatcaaatccgccaacatcctcctcgacaacaacttcgaagc 31970476 Score = 42.1 bits (21), Expect = 4.2 Identities = 36/41 (87%) Strand = Plus / Minus Query: 504 atccacggggacatcaagtcatccaacatccttctcaacga 544 |||||| |||| ||||||| ||||||||||| |||||||| Sbjct: 7452046 atccaccgggatgtcaagtcgtccaacatcctcctcaacga 7452006 Score = 42.1 bits (21), Expect = 4.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 421 tggactggccgacgagggtgaagatcgcg 449 ||||||||||||||||| |||| |||||| Sbjct: 10409632 tggactggccgacgaggatgaacatcgcg 10409660 Score = 42.1 bits (21), Expect = 4.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 457 cggcgcgtgggttggcctacctgcacgag 485 ||||||||||| |||||||||| |||||| Sbjct: 12091930 cggcgcgtgggctggcctacctccacgag 12091958 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 336 ggagaggaggaagaagaagaa 356 ||||||||||||||||||||| Sbjct: 26479368 ggagaggaggaagaagaagaa 26479348
>emb|X65875.1|HVITR1 H.vulgare Itr1 gene Length = 5463 Score = 99.6 bits (50), Expect = 2e-17 Identities = 89/101 (88%), Gaps = 2/101 (1%) Strand = Plus / Plus Query: 993 gttggaattatgccctagaggcaataataaatatagttattattataattcctgtatcaa 1052 ||||||| ||||||||||||| ||| ||||||| |||||||||||| ||| ||| |||| Sbjct: 47 gttggaaatatgccctagaggtaatgataaata--gttattattatatttcttgtttcaa 104 Query: 1053 gataatcgttcattatccatgctataattgtattgaatgaa 1093 ||||||| || ||||| |||||||||||| ||||||||||| Sbjct: 105 gataatcatttattattcatgctataattatattgaatgaa 145
>gb|AF339051.1| Triticum monococcum WIS-2-1A Ty1-copia-like retrotransposon, complete sequence Length = 9682 Score = 99.6 bits (50), Expect = 2e-17 Identities = 87/98 (88%), Gaps = 1/98 (1%) Strand = Plus / Plus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 1050 ||||||||| |||||||||||||||||||||||| | ||||||||||| ||||| || Sbjct: 7665 ctgttggaaatatgccctagaggcaataataaattga-ttattattatatttccttgttc 7723 Query: 1051 aagataatcgttcattatccatgctataattgtattga 1088 | |||||||||| ||||||||||||| ||||||||||| Sbjct: 7724 atgataatcgtttattatccatgctagaattgtattga 7761 Score = 97.6 bits (49), Expect = 8e-17 Identities = 86/97 (88%), Gaps = 1/97 (1%) Strand = Plus / Plus Query: 992 tgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatca 1051 |||||||| |||||||||||||||||||||||| | ||||||||||| ||||| ||| Sbjct: 713 tgttggaaatatgccctagaggcaataataaattga-ttattattatatttccttgttca 771 Query: 1052 agataatcgttcattatccatgctataattgtattga 1088 |||||||||| ||||||||||||| ||||||||||| Sbjct: 772 tgataatcgtttattatccatgctagaattgtattga 808
>gb|AC084319.5|AC084319 Oryza sativa chromosome 3 BAC OSJNBa0004B24 genomic sequence, complete sequence Length = 152883 Score = 99.6 bits (50), Expect = 2e-17 Identities = 92/106 (86%) Strand = Plus / Plus Query: 738 ggtacttggcgccggagtacgcctcgacggggaagctgacggagaaatcagacgtgttct 797 ||||| |||||||||||||||| || | |||||||||||||| | ||| |||||||| | Sbjct: 23346 ggtacctggcgccggagtacgcatcaagcgggaagctgacggacagatcggacgtgtttt 23405 Query: 798 tcttcggggtggtgctcctggagctcatcaccggccggaagcccgt 843 |||||||||||||| |||||||||||||||| ||||||||||| Sbjct: 23406 cgttcggggtggtgctgttggagctcatcaccgggcggaagcccgt 23451 Score = 48.1 bits (24), Expect = 0.068 Identities = 30/32 (93%) Strand = Plus / Plus Query: 610 tctcgatgcgtgtgatgggcacattcgggtaa 641 |||||| ||| ||||||||||||||||||||| Sbjct: 23156 tctcgacgcgcgtgatgggcacattcgggtaa 23187
>emb|X57168.1|TAWIS21AI T.aestivum Wis-2-1A retrotransposon-like element Length = 1755 Score = 97.6 bits (49), Expect = 8e-17 Identities = 86/97 (88%), Gaps = 1/97 (1%) Strand = Plus / Plus Query: 992 tgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatca 1051 |||||||| |||||||||||||||||||||||| | ||||||||||| ||||| ||| Sbjct: 1 tgttggaaatatgccctagaggcaataataaattga-ttattattatatttccttgttca 59 Query: 1052 agataatcgttcattatccatgctataattgtattga 1088 |||||||||| ||||||||||||| ||||||||||| Sbjct: 60 tgataatcgtttattatccatgctagaattgtattga 96
>emb|AJ582609.1|HEU582609 Hordeum euclaston retrotransposon BARE1 long terminal repeat DNA, clone HEUCD Length = 1951 Score = 95.6 bits (48), Expect = 3e-16 Identities = 85/96 (88%), Gaps = 1/96 (1%) Strand = Plus / Plus Query: 993 gttggaattatgccctagaggcaataataaatatagttattattataattcctgtatcaa 1052 ||||||||||||||||||||||||| |||| | |||||||||| ||| ||||| ||| Sbjct: 1 gttggaattatgccctagaggcaatgataatt-tagttattatcatatttccttgttcat 59 Query: 1053 gataatcgttcattatccatgctataattgtattga 1088 |||||||||| ||| ||||||||||||||||||||| Sbjct: 60 gataatcgtttattgtccatgctataattgtattga 95
>emb|Y18782.2|HEUY18782 Hordeum euclaston BARE-1 long terminal repeat DNA (HEUCC) Length = 1132 Score = 95.6 bits (48), Expect = 3e-16 Identities = 85/96 (88%), Gaps = 1/96 (1%) Strand = Plus / Plus Query: 993 gttggaattatgccctagaggcaataataaatatagttattattataattcctgtatcaa 1052 ||||||||||||||||||||||||| ||||| || |||||||| || ||||| ||| Sbjct: 1 gttggaattatgccctagaggcaatgataaa-atggttattatcttatttccttgttcat 59 Query: 1053 gataatcgttcattatccatgctataattgtattga 1088 |||||||||| ||||||||||||||||||||||||| Sbjct: 60 gataatcgtttattatccatgctataattgtattga 95
>emb|Z84554.1|HVE08492R H.vulgare BARE-1 long terminal repeat DNA; ID E08492R Length = 356 Score = 93.7 bits (47), Expect = 1e-15 Identities = 86/98 (87%), Gaps = 2/98 (2%) Strand = Plus / Plus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 1050 ||||||||| |||||||||||||||||||||| || |||||||||||| ||| | || Sbjct: 212 ctgttggaaatatgccctagaggcaataataatta--gttattattatatttctttgttc 269 Query: 1051 aagataatcgttcattatccatgctataattgtattga 1088 | |||||||||| ||||||||||||| ||||||||||| Sbjct: 270 atgataatcgtttattatccatgctacaattgtattga 307
>gb|DQ537336.1| Triticum aestivum clones BAC 1289J04; BAC 1001P20, complete sequence Length = 206063 Score = 91.7 bits (46), Expect = 5e-15 Identities = 86/98 (87%), Gaps = 1/98 (1%) Strand = Plus / Plus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 1050 ||||||||| |||||||||||||||||||||||| | ||||||||||| ||||| || Sbjct: 176456 ctgttggaaatatgccctagaggcaataataaat-tgattattattatatttccttgttc 176514 Query: 1051 aagataatcgttcattatccatgctataattgtattga 1088 | |||||||| | ||||||||||||| ||||||||||| Sbjct: 176515 atgataatcgcttattatccatgctagaattgtattga 176552 Score = 91.7 bits (46), Expect = 5e-15 Identities = 86/98 (87%), Gaps = 1/98 (1%) Strand = Plus / Plus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 1050 ||||||||| |||||||||||||||||||||||| | ||||||||||| ||||| || Sbjct: 183382 ctgttggaaatatgccctagaggcaataataaat-tgattattattatatttccttgttc 183440 Query: 1051 aagataatcgttcattatccatgctataattgtattga 1088 | |||||||| | ||||||||||||| ||||||||||| Sbjct: 183441 atgataatcgcttattatccatgctagaattgtattga 183478 Score = 83.8 bits (42), Expect = 1e-12 Identities = 85/98 (86%), Gaps = 1/98 (1%) Strand = Plus / Plus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 1050 ||||||||| ||||||||||||||||||||||| || ||||||||| || ||||| || Sbjct: 66445 ctgttggaaatatgccctagaggcaataataaa-atggttattattgtatttccttgttc 66503 Query: 1051 aagataatcgttcattatccatgctataattgtattga 1088 | |||||| || ||||| ||||||||||||||||||| Sbjct: 66504 atgataattgtctattattcatgctataattgtattga 66541 Score = 79.8 bits (40), Expect = 2e-11 Identities = 83/96 (86%), Gaps = 1/96 (1%) Strand = Plus / Minus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 1050 ||||||||| ||||||||||||||||||||||| || |||||||||||| ||||| || Sbjct: 156554 ctgttggaaatatgccctagaggcaataataaa-atggttattattatatttccttgttc 156496 Query: 1051 aagataatcgttcattatccatgctataattgtatt 1086 | |||||| || ||| | ||||||||||||||||| Sbjct: 156495 atgataattgtctattgttcatgctataattgtatt 156460 Score = 69.9 bits (35), Expect = 2e-08 Identities = 81/95 (85%), Gaps = 1/95 (1%) Strand = Plus / Minus Query: 992 tgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatca 1051 |||||||| ||||||||||||||||||||||| || ||||||||||| ||||| ||| Sbjct: 163339 tgttggaaatatgccctagaggcaataataaa-atgattattattatatttccttgttca 163281 Query: 1052 agataatcgttcattatccatgctataattgtatt 1086 |||||| || ||| | ||||||||||||||||| Sbjct: 163280 tgataattgtctattgttcatgctataattgtatt 163246 Score = 63.9 bits (32), Expect = 1e-06 Identities = 81/96 (84%), Gaps = 1/96 (1%) Strand = Plus / Plus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 1050 ||||||||| ||||||||||||||||||||||| | ||||||||||| ||||| || Sbjct: 153571 ctgttggaaatatgccctagaggcaataataaa-aggattattattatatttccttgttc 153629 Query: 1051 aagataatcgttcattatccatgctataattgtatt 1086 | |||||| || |||| ||||||||||||||||| Sbjct: 153630 atgataattgtcttttattcatgctataattgtatt 153665 Score = 56.0 bits (28), Expect = 3e-04 Identities = 31/32 (96%) Strand = Plus / Plus Query: 992 tgttggaattatgccctagaggcaataataaa 1023 |||||||| ||||||||||||||||||||||| Sbjct: 146500 tgttggaaatatgccctagaggcaataataaa 146531 Score = 50.1 bits (25), Expect = 0.017 Identities = 80/97 (82%), Gaps = 1/97 (1%) Strand = Plus / Plus Query: 992 tgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatca 1051 |||||||| ||||||||||||||||||| || || ||||||||| || ||||| ||| Sbjct: 59586 tgttggaaatatgccctagaggcaataacgaa-atggttattattgtatttccttattca 59644 Query: 1052 agataatcgttcattatccatgctataattgtattga 1088 |||||| || ||| ||||||||||||||||||| Sbjct: 59645 tgataattgtctgctattcatgctataattgtattga 59681 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Minus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 11636 ggaaatatgccctagaggcaataataaa 11609
>gb|AY368673.1| Triticum turgidum HMW-glutenin locus, complete sequence Length = 285506 Score = 91.7 bits (46), Expect = 5e-15 Identities = 86/98 (87%), Gaps = 1/98 (1%) Strand = Plus / Plus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 1050 ||||||||| |||||||||||||||||||||||| | ||||||||||| ||||| || Sbjct: 164822 ctgttggaaatatgccctagaggcaataataaat-tgattattattatatttccttgttc 164880 Query: 1051 aagataatcgttcattatccatgctataattgtattga 1088 | |||||||| | ||||||||||||| ||||||||||| Sbjct: 164881 atgataatcgcttattatccatgctagaattgtattga 164918 Score = 83.8 bits (42), Expect = 1e-12 Identities = 85/98 (86%), Gaps = 1/98 (1%) Strand = Plus / Plus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 1050 ||||||||| ||||||||||||||||||||||| || ||||||||| || ||||| || Sbjct: 49467 ctgttggaaatatgccctagaggcaataataaa-atggttattattgtatttccttgttc 49525 Query: 1051 aagataatcgttcattatccatgctataattgtattga 1088 | |||||| || ||||| ||||||||||||||||||| Sbjct: 49526 atgataattgtctattattcatgctataattgtattga 49563 Score = 83.8 bits (42), Expect = 1e-12 Identities = 85/98 (86%), Gaps = 1/98 (1%) Strand = Plus / Plus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 1050 ||||||||| |||||||||||||||||||||||| | ||||||||||| ||||| || Sbjct: 157914 ctgttggaaatatgccctagaggcaataataaat-tgattattattatatttccttgttc 157972 Query: 1051 aagataatcgttcattatccatgctataattgtattga 1088 | ||||||| | ||||||||||||| ||||||||||| Sbjct: 157973 atgataatctcttattatccatgctagaattgtattga 158010 Score = 79.8 bits (40), Expect = 2e-11 Identities = 83/96 (86%), Gaps = 1/96 (1%) Strand = Plus / Minus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 1050 ||||||||| ||||||||||||||||||||||| || |||||||||||| ||||| || Sbjct: 138001 ctgttggaaatatgccctagaggcaataataaa-atggttattattatatttccttgttc 137943 Query: 1051 aagataatcgttcattatccatgctataattgtatt 1086 | |||||| || ||| | ||||||||||||||||| Sbjct: 137942 atgataattgtctattgttcatgctataattgtatt 137907 Score = 71.9 bits (36), Expect = 5e-09 Identities = 82/96 (85%), Gaps = 1/96 (1%) Strand = Plus / Minus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 1050 ||||||||| ||||||||||||||||||||||| || ||||||||| || ||||| || Sbjct: 219799 ctgttggaaatatgccctagaggcaataataaa-atggttattattgtatttccttgttc 219741 Query: 1051 aagataatcgttcattatccatgctataattgtatt 1086 | |||||| || ||| | ||||||||||||||||| Sbjct: 219740 atgataattgtctattgttcatgctataattgtatt 219705 Score = 71.9 bits (36), Expect = 5e-09 Identities = 82/96 (85%), Gaps = 1/96 (1%) Strand = Plus / Minus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 1050 ||||||||| ||||||||||||||||||||||| || ||||||||| || ||||| || Sbjct: 226638 ctgttggaaatatgccctagaggcaataataaa-atggttattattgtatttccttgttc 226580 Query: 1051 aagataatcgttcattatccatgctataattgtatt 1086 | |||||| || ||| | ||||||||||||||||| Sbjct: 226579 atgataattgtctattgttcatgctataattgtatt 226544 Score = 69.9 bits (35), Expect = 2e-08 Identities = 81/95 (85%), Gaps = 1/95 (1%) Strand = Plus / Minus Query: 992 tgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatca 1051 |||||||| ||||||||||||||||||||||| || ||||||||||| ||||| ||| Sbjct: 144788 tgttggaaatatgccctagaggcaataataaa-atgattattattatatttccttgttca 144730 Query: 1052 agataatcgttcattatccatgctataattgtatt 1086 |||||| || ||| | ||||||||||||||||| Sbjct: 144729 tgataattgtctattgttcatgctataattgtatt 144695 Score = 69.9 bits (35), Expect = 2e-08 Identities = 81/95 (85%), Gaps = 1/95 (1%) Strand = Plus / Minus Query: 992 tgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatca 1051 |||||||| ||||||||||||||||||||||| || ||||||||| || ||||| ||| Sbjct: 233487 tgttggaaatatgccctagaggcaataataaa-atggttattattgtatttccttgttca 233429 Query: 1052 agataatcgttcattatccatgctataattgtatt 1086 |||||| || ||| | ||||||||||||||||| Sbjct: 233428 tgataattgtctattgttcatgctataattgtatt 233394 Score = 63.9 bits (32), Expect = 1e-06 Identities = 81/96 (84%), Gaps = 1/96 (1%) Strand = Plus / Plus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 1050 ||||||||| ||||||||||||||||||||||| | ||||||||||| ||||| || Sbjct: 135017 ctgttggaaatatgccctagaggcaataataaa-aggattattattatatttccttgttc 135075 Query: 1051 aagataatcgttcattatccatgctataattgtatt 1086 | |||||| || |||| ||||||||||||||||| Sbjct: 135076 atgataattgtcttttattcatgctataattgtatt 135111 Score = 56.0 bits (28), Expect = 3e-04 Identities = 31/32 (96%) Strand = Plus / Plus Query: 992 tgttggaattatgccctagaggcaataataaa 1023 |||||||| ||||||||||||||||||||||| Sbjct: 128023 tgttggaaatatgccctagaggcaataataaa 128054 Score = 50.1 bits (25), Expect = 0.017 Identities = 80/97 (82%), Gaps = 1/97 (1%) Strand = Plus / Plus Query: 992 tgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatca 1051 |||||||| ||||||||||||||||||| || || ||||||||| || ||||| ||| Sbjct: 42608 tgttggaaatatgccctagaggcaataacgaa-atggttattattgtatttccttattca 42666 Query: 1052 agataatcgttcattatccatgctataattgtattga 1088 |||||| || ||| ||||||||||||||||||| Sbjct: 42667 tgataattgtctgctattcatgctataattgtattga 42703
>emb|Z84561.1|HVE1325OR H.vulgare BARE-1 long terminal repeat DNA; ID E1325OR Length = 500 Score = 91.7 bits (46), Expect = 5e-15 Identities = 87/98 (88%), Gaps = 2/98 (2%) Strand = Plus / Plus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 1050 ||||||||| || ||||||| |||||||||||| ||||||||||||||| ||||||| | Sbjct: 365 ctgttggaaatacgccctaggggcaataataaa-atagttattattatatttcctgtttt 423 Query: 1051 aagataatcgttcattatccatgctataattgtattga 1088 ||| |||||||| ||||||||||||||||| |||||| Sbjct: 424 aagttaatcgtt-tttatccatgctataattatattga 460
>emb|Z84555.1|HV1318IRC H.vulgare BARE-1 long terminal repeat DNA; ID E1318IRC Length = 391 Score = 91.7 bits (46), Expect = 5e-15 Identities = 86/98 (87%), Gaps = 1/98 (1%) Strand = Plus / Plus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 1050 |||||| || |||||||||||||||||||||||| |||||||||||||| ||| | || Sbjct: 255 ctgttgtaaatatgccctagaggcaataataaat-tagttattattatatttctttgttc 313 Query: 1051 aagataatcgttcattatccatgctataattgtattga 1088 |||||||||| |||||||||||||||||||| |||| Sbjct: 314 gtgataatcgtttattatccatgctataattgtgttga 351
>gb|AY146588.1| Triticum monococcum BAC clone 453N11, complete sequence Length = 285444 Score = 89.7 bits (45), Expect = 2e-14 Identities = 85/97 (87%), Gaps = 1/97 (1%) Strand = Plus / Plus Query: 992 tgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatca 1051 |||||||| ||||||||||||||||| |||||| | |||||||||||| ||||| ||| Sbjct: 158086 tgttggaaatatgccctagaggcaatgataaat-tggttattattatatttccttgttca 158144 Query: 1052 agataatcgttcattatccatgctataattgtattga 1088 |||||||||| ||||||||||||| |||||| |||| Sbjct: 158145 tgataatcgtttattatccatgctagaattgttttga 158181 Score = 58.0 bits (29), Expect = 7e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 991 ctgttggaattatgccctagaggcaataataaa 1023 ||||||||| ||||||||||||||||||||||| Sbjct: 83201 ctgttggaaatatgccctagaggcaataataaa 83233 Score = 56.0 bits (28), Expect = 3e-04 Identities = 31/32 (96%) Strand = Plus / Plus Query: 992 tgttggaattatgccctagaggcaataataaa 1023 |||||||| ||||||||||||||||||||||| Sbjct: 76188 tgttggaaatatgccctagaggcaataataaa 76219 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Plus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 4527 ggaaatatgccctagaggcaataataaa 4554 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Minus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 12295 ggaaatatgccctagaggcaataataaa 12268 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Minus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 16911 ggaaatatgccctagaggcaataataaa 16884 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Plus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 72348 ggaaatatgccctagaggcaataataaa 72375 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Plus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 88068 ggaaatatgccctagaggcaataataaa 88095 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Plus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 91146 ggaaatatgccctagaggcaataataaa 91173 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Plus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 98001 ggaaatatgccctagaggcaataataaa 98028 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Plus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 238127 ggaaatatgccctagaggcaataataaa 238154
>emb|Y18783.2|HPUY18783 Hordeum pusillum BARE-1 long terminal repeat DNA (HPUSA) Length = 1779 Score = 89.7 bits (45), Expect = 2e-14 Identities = 85/97 (87%), Gaps = 1/97 (1%) Strand = Plus / Plus Query: 992 tgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatca 1051 |||| ||||||||||||||||||||| ||||| || |||||||| ||| ||||| ||| Sbjct: 3 tgttagaattatgccctagaggcaatgataaa-atggttattatcatatttccttgttca 61 Query: 1052 agataatcgttcattatccatgctataattgtattga 1088 |||||||||| ||||||||||||| ||||||||||| Sbjct: 62 tgataatcgtttattatccatgctagaattgtattga 98
>emb|Y18775.2|HROY18775 Hordeum roshevitzii BARE-1 long terminal repeat DNA (HROSD) Length = 1858 Score = 89.7 bits (45), Expect = 2e-14 Identities = 85/97 (87%), Gaps = 1/97 (1%) Strand = Plus / Plus Query: 992 tgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatca 1051 |||||||||||||||||||||||||| |||| | ||||||||| || ||||| ||| Sbjct: 3 tgttggaattatgccctagaggcaatgataattg-agttattatcatgtttccttgttca 61 Query: 1052 agataatcgttcattatccatgctataattgtattga 1088 |||||||||| ||||||||||||||||||||||||| Sbjct: 62 tgataatcgtttattatccatgctataattgtattga 98
>dbj|AB061327.1| Avena sativa LTR-retrotransposon OARE-1 gag-pol pseudogene for polyprotein Length = 8665 Score = 87.7 bits (44), Expect = 8e-14 Identities = 86/96 (89%), Gaps = 3/96 (3%) Strand = Plus / Plus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 1050 ||||||||||||||||||||||||||||||||| || |||||||||||||||| ||| || Sbjct: 6948 ctgttggaattatgccctagaggcaataataaagat-gttattattataattcttgt-tc 7005 Query: 1051 aagataatcgttcattatccatgctataattgtatt 1086 | |||||| ||| || ||||||||| ||||||||| Sbjct: 7006 atgataat-gtttatattccatgctagaattgtatt 7040 Score = 77.8 bits (39), Expect = 8e-11 Identities = 84/95 (88%), Gaps = 3/95 (3%) Strand = Plus / Plus Query: 992 tgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatca 1051 |||||||||||||||||||||| ||||||||| || |||||||||||||||| ||| ||| Sbjct: 1 tgttggaattatgccctagaggaaataataaagat-gttattattataattcttgt-tca 58 Query: 1052 agataatcgttcattatccatgctataattgtatt 1086 |||||| ||| || ||||||||| ||||||||| Sbjct: 59 tgataat-gtttatattccatgctagaattgtatt 92
>ref|NM_001057970.1| Oryza sativa (japonica cultivar-group) Os03g0776100 (Os03g0776100) mRNA, complete cds Length = 1668 Score = 85.7 bits (43), Expect = 3e-13 Identities = 76/87 (87%) Strand = Plus / Plus Query: 737 gggtacttggcgccggagtacgcctcgacggggaagctgacggagaaatcagacgtgttc 796 |||||| |||||||||||||||| |||| ||||||||||||||||| || ||||||||| Sbjct: 1075 gggtacctggcgccggagtacgcgtcgagcgggaagctgacggagaagtcggacgtgttc 1134 Query: 797 ttcttcggggtggtgctcctggagctc 823 | || ||| ||| |||| ||||||||| Sbjct: 1135 tcctacggcgtgatgctgctggagctc 1161 Score = 77.8 bits (39), Expect = 8e-11 Identities = 90/107 (84%) Strand = Plus / Plus Query: 471 gcctacctgcacgaggactgtcatccaaggatcatccacggggacatcaagtcatccaac 530 |||||||| ||||| ||||| ||||| ||||||||||| | |||||||| || ||||| Sbjct: 910 gcctacctacacgaagactgccatcctcggatcatccaccgcgacatcaaatccgccaac 969 Query: 531 atccttctcaacgacaacttagaagctcaggtcgcggatttcgggct 577 ||||| ||| || ||||||| ||||| |||| |||||||||||||| Sbjct: 970 atcctcctcgacaacaacttcgaagcaaaggtggcggatttcgggct 1016
>emb|Y18780.2|HEUY18780 Hordeum euclaston BARE-1 long terminal repeat DNA (HEUCA) Length = 1673 Score = 85.7 bits (43), Expect = 3e-13 Identities = 83/95 (87%), Gaps = 1/95 (1%) Strand = Plus / Plus Query: 994 ttggaattatgccctagaggcaataataaatatagttattattataattcctgtatcaag 1053 |||||||||||||||||||||||| || || || |||||||||||| ||||| || | Sbjct: 2 ttggaattatgccctagaggcaatgatgaa-atggttattattatatttccttgtgcatg 60 Query: 1054 ataatcgttcattatccatgctataattgtattga 1088 |||||| || ||||||||||||||||||||||||| Sbjct: 61 ataatcatttattatccatgctataattgtattga 95
>gb|AC091494.9| Oryza sativa chromosome 3 BAC OSJNBa0070N04 genomic sequence, complete sequence Length = 150663 Score = 85.7 bits (43), Expect = 3e-13 Identities = 76/87 (87%) Strand = Plus / Minus Query: 737 gggtacttggcgccggagtacgcctcgacggggaagctgacggagaaatcagacgtgttc 796 |||||| |||||||||||||||| |||| ||||||||||||||||| || ||||||||| Sbjct: 81033 gggtacctggcgccggagtacgcgtcgagcgggaagctgacggagaagtcggacgtgttc 80974 Query: 797 ttcttcggggtggtgctcctggagctc 823 | || ||| ||| |||| ||||||||| Sbjct: 80973 tcctacggcgtgatgctgctggagctc 80947 Score = 44.1 bits (22), Expect = 1.1 Identities = 49/58 (84%) Strand = Plus / Minus Query: 499 ggatcatccacggggacatcaagtcatccaacatccttctcaacgacaacttagaagc 556 ||||||||||| | |||||||| || |||||||||| ||| || ||||||| ||||| Sbjct: 81270 ggatcatccaccgcgacatcaaatccgccaacatcctcctcgacaacaacttcgaagc 81213
>emb|Z84540.1|HV19RC6DL H.vulgare BARE-1 long terminal repeat DNA; ID 19RC6DEL Length = 412 Score = 81.8 bits (41), Expect = 5e-12 Identities = 87/97 (89%), Gaps = 4/97 (4%) Strand = Plus / Plus Query: 994 ttggaattatgccc-tagaggcaataataaatatagttattattataattc-ctgtatca 1051 |||||| ||||||| ||||||||||||||||| |||||||||||||| ||| |||| ||| Sbjct: 282 ttggaaatatgcccgtagaggcaataataaat-tagttattattatatttctctgt-tca 339 Query: 1052 agataatcgttcattatccatgctataattgtattga 1088 |||||||||| ||| |||||||||||||| |||||| Sbjct: 340 tgataatcgtttattgtccatgctataattttattga 376
>gb|AF459639.1| Triticum monococcum BAC clones 116F2 and 115G1 gene sequence Length = 215241 Score = 79.8 bits (40), Expect = 2e-11 Identities = 80/92 (86%), Gaps = 1/92 (1%) Strand = Plus / Plus Query: 992 tgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatca 1051 |||||||| ||||||||||||||||||||||| ||||||||||||||| ||||| ||| Sbjct: 111006 tgttggaaatatgccctagaggcaataataaa-atagttattattatatttccttgttca 111064 Query: 1052 agataatcgttcattatccatgctataattgt 1083 |||||| || ||| | |||||||||||||| Sbjct: 111065 tgataattgtctattgttcatgctataattgt 111096 Score = 75.8 bits (38), Expect = 3e-10 Identities = 78/90 (86%), Gaps = 1/90 (1%) Strand = Plus / Plus Query: 994 ttggaattatgccctagaggcaataataaatatagttattattataattcctgtatcaag 1053 |||||| ||||||||||||||||||||||| ||||||||||||||| ||||| ||| | Sbjct: 118044 ttggaaatatgccctagaggcaataataaa-atagttattattatatttccttgttcatg 118102 Query: 1054 ataatcgttcattatccatgctataattgt 1083 ||||| || ||| | |||||||||||||| Sbjct: 118103 ataattgtctattgttcatgctataattgt 118132 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Minus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 5939 ggaaatatgccctagaggcaataataaa 5912 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Plus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 81211 ggaaatatgccctagaggcaataataaa 81238 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Plus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 90959 ggaaatatgccctagaggcaataataaa 90986 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Plus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 97755 ggaaatatgccctagaggcaataataaa 97782
>emb|Z84563.1|HVE1327QR H.vulgare BARE-1 long terminal repeat DNA; ID E1327QR Length = 494 Score = 79.8 bits (40), Expect = 2e-11 Identities = 90/103 (87%), Gaps = 4/103 (3%) Strand = Plus / Plus Query: 992 tgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatca 1051 |||||||| ||||||||||||||||| |||| |||||||||||||| ||| ||| | | Sbjct: 308 tgttggaaatatgccctagaggcaatgataa--atagttattattat-tttcatgtttaa 364 Query: 1052 agataatcgttcattatccatgctataattgtattgaatgaag 1094 ||||||||||| |||||| |||||||||||| |||||||||| Sbjct: 365 agataatcgtttattatcagtgctataattgt-ttgaatgaag 406
>emb|Z84538.1|H1374YRCX H.vulgare BARE-1 long terminal repeat DNA; ID 1374YRCX Length = 239 Score = 79.8 bits (40), Expect = 2e-11 Identities = 83/96 (86%), Gaps = 1/96 (1%) Strand = Plus / Plus Query: 992 tgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatca 1051 |||||||| |||| |||| |||||||||||||| |||||||||||||| ||| | ||| Sbjct: 107 tgttggaaatatgtcctaaaggcaataataaat-tagttattattatatttctttggtca 165 Query: 1052 agataatcgttcattatccatgctataattgtattg 1087 |||||| || |||||||||||||||||||||||| Sbjct: 166 taataatcatttattatccatgctataattgtattg 201
>ref|NM_001062580.1| Oryza sativa (japonica cultivar-group) Os05g0516400 (Os05g0516400) mRNA, complete cds Length = 3070 Score = 77.8 bits (39), Expect = 8e-11 Identities = 66/75 (88%) Strand = Plus / Plus Query: 465 gggttggcctacctgcacgaggactgtcatccaaggatcatccacggggacatcaagtca 524 |||||||||||||||||||| ||||||| ||||| ||| || ||| | ||||||||| || Sbjct: 1689 gggttggcctacctgcacgaagactgtcgtccaaagattattcaccgagacatcaaggca 1748 Query: 525 tccaacatccttctc 539 |||||||||||||| Sbjct: 1749 gccaacatccttctc 1763
>dbj|AK110196.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-162-B01, full insert sequence Length = 3070 Score = 77.8 bits (39), Expect = 8e-11 Identities = 66/75 (88%) Strand = Plus / Plus Query: 465 gggttggcctacctgcacgaggactgtcatccaaggatcatccacggggacatcaagtca 524 |||||||||||||||||||| ||||||| ||||| ||| || ||| | ||||||||| || Sbjct: 1689 gggttggcctacctgcacgaagactgtcgtccaaagattattcaccgagacatcaaggca 1748 Query: 525 tccaacatccttctc 539 |||||||||||||| Sbjct: 1749 gccaacatccttctc 1763
>emb|AJ582608.1|HMA582608 Hordeum marinum retrotransposon BARE1 long terminal repeat DNA, clone HMARE Length = 1556 Score = 75.8 bits (38), Expect = 3e-10 Identities = 75/86 (87%), Gaps = 1/86 (1%) Strand = Plus / Plus Query: 992 tgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatca 1051 |||||||||||||||||||||||||| |||||| |||||||||| | | ||||| ||| Sbjct: 3 tgttggaattatgccctagaggcaatgataaat-tagttattatcacatttccttgttca 61 Query: 1052 agataatcgttcattatccatgctat 1077 ||||||| || |||||||||||||| Sbjct: 62 tgataatcatttattatccatgctat 87
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7 Length = 29644043 Score = 75.8 bits (38), Expect = 3e-10 Identities = 83/98 (84%) Strand = Plus / Minus Query: 737 gggtacttggcgccggagtacgcctcgacggggaagctgacggagaaatcagacgtgttc 796 |||||| |||||||||||||||| |||| |||||||||||||| || || ||||||||| Sbjct: 2025377 gggtacctggcgccggagtacgcgtcgagcgggaagctgacggacaagtccgacgtgttc 2025318 Query: 797 ttcttcggggtggtgctcctggagctcatcaccggccg 834 | || ||| || |||| |||||||| |||||||||| Sbjct: 2025317 tcctacggcgtcatgctgctggagcttctcaccggccg 2025280 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 337 gagaggaggaagaagaagaac 357 ||||||||||||||||||||| Sbjct: 28127144 gagaggaggaagaagaagaac 28127164
>dbj|AP004314.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0495H05 Length = 205595 Score = 75.8 bits (38), Expect = 3e-10 Identities = 83/98 (84%) Strand = Plus / Minus Query: 737 gggtacttggcgccggagtacgcctcgacggggaagctgacggagaaatcagacgtgttc 796 |||||| |||||||||||||||| |||| |||||||||||||| || || ||||||||| Sbjct: 109674 gggtacctggcgccggagtacgcgtcgagcgggaagctgacggacaagtccgacgtgttc 109615 Query: 797 ttcttcggggtggtgctcctggagctcatcaccggccg 834 | || ||| || |||| |||||||| |||||||||| Sbjct: 109614 tcctacggcgtcatgctgctggagcttctcaccggccg 109577
>emb|CT009586.1| Triticum aestivum Length = 107638 Score = 73.8 bits (37), Expect = 1e-09 Identities = 80/93 (86%), Gaps = 1/93 (1%) Strand = Plus / Plus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 1050 ||||||||| ||||||||||||||||||||||| || |||||||||||| ||||| || Sbjct: 42792 ctgttggaaatatgccctagaggcaataataaa-atggttattattatatttccttgttc 42850 Query: 1051 aagataatcgttcattatccatgctataattgt 1083 | |||||| || ||| | |||||||||||||| Sbjct: 42851 atgataattgtctattgttcatgctataattgt 42883 Score = 69.9 bits (35), Expect = 2e-08 Identities = 51/55 (92%), Gaps = 1/55 (1%) Strand = Plus / Plus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcct 1045 ||||||||| ||||||||||||||||||||||| || |||||||||||| ||||| Sbjct: 36139 ctgttggaaatatgccctagaggcaataataaa-atggttattattatatttcct 36192 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Minus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 19242 ggaaatatgccctagaggcaataataaa 19215 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Minus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 47279 ggaaatatgccctagaggcaataataaa 47252 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Minus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 54070 ggaaatatgccctagaggcaataataaa 54043 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Minus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 68713 ggaaatatgccctagaggcaataataaa 68686
>gb|AY534123.1|SEG_AY534122S2 Aegilops tauschii transposons Caspar, XJ, Angela, and XJ, complete sequence; LRR protein WM1.7 (WM1.7) and LRR protein WM1.12 (WM1.12) genes, complete cds; transposons Ophelia2, Angela3s, and XJ3, complete sequence; LRR protein WM1.3 (WM1.3) gene, complete cds; Stowaway MITE, transposons XJ1, Jody, Angela, and XJ and Stowaway MITE, complete sequence; LRR protein WM1.2 (WM1.2) and LLR protein WM1.1 (WM1.1) genes, complete cds; transposons XJ, XA, Angela, and Fred and WM1.11 gene, complete sequence; RPM1-like sequence and LRR protein WM1.10 (WM1.10) genes, complete cds; and transposon XJ, complete sequence Length = 198649 Score = 73.8 bits (37), Expect = 1e-09 Identities = 82/96 (85%), Gaps = 2/96 (2%) Strand = Plus / Plus Query: 992 tgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatca 1051 |||||||| |||||||||||||||||||||| || |||||||||||| ||| | ||| Sbjct: 3632 tgttggaaatatgccctagaggcaataataa--atggttattattatatttctttgttca 3689 Query: 1052 agataatcgttcattatccatgctataattgtattg 1087 ||||||||| ||| | |||||||||||||||||| Sbjct: 3690 tgataatcgtctattgttcatgctataattgtattg 3725 Score = 67.9 bits (34), Expect = 7e-08 Identities = 82/97 (84%), Gaps = 2/97 (2%) Strand = Plus / Plus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 1050 ||||||||| |||||||||||||||||||||| || |||||||||||| ||| | || Sbjct: 10518 ctgttggaaatatgccctagaggcaataataa--atggttattattatatttctttgttc 10575 Query: 1051 aagataatcgttcattatccatgctataattgtattg 1087 | ||||||| | ||| | |||||||||||||||||| Sbjct: 10576 atgataatcatctattgttcatgctataattgtattg 10612 Score = 58.0 bits (29), Expect = 7e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 992 tgttggaattatgccctagaggcaataataaat 1024 |||||||| |||||||||||||||||||||||| Sbjct: 94741 tgttggaaatatgccctagaggcaataataaat 94709 Score = 56.0 bits (28), Expect = 3e-04 Identities = 31/32 (96%) Strand = Plus / Minus Query: 991 ctgttggaattatgccctagaggcaataataa 1022 ||||||||| |||||||||||||||||||||| Sbjct: 87697 ctgttggaaatatgccctagaggcaataataa 87666 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Minus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 55569 ggaaatatgccctagaggcaataataaa 55542 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Minus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 169604 ggaaatatgccctagaggcaataataaa 169577 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Minus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 176442 ggaaatatgccctagaggcaataataaa 176415
>emb|AJ582612.1|HPU582612 Hordeum pusillum retrotransposon BARE1 long terminal repeat DNA, clone HPUSE Length = 1891 Score = 73.8 bits (37), Expect = 1e-09 Identities = 85/97 (87%), Gaps = 3/97 (3%) Strand = Plus / Plus Query: 992 tgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatca 1051 ||||||||||||||| |||||| ||| |||||| |||||||||| | | ||||| ||| Sbjct: 3 tgttggaattatgcc-tagagg-aatgataaat-tagttattatcacatttccttgttca 59 Query: 1052 agataatcgttcattatccatgctataattgtattga 1088 |||||||||| ||||||||||||||||||||||||| Sbjct: 60 tgataatcgtttattatccatgctataattgtattga 96
>gb|AY641410.1| Hordeum vulgare subsp. vulgare retrotransposons Sandra3 and Sandra4, complete sequence Length = 7056 Score = 73.8 bits (37), Expect = 1e-09 Identities = 80/93 (86%), Gaps = 1/93 (1%) Strand = Plus / Minus Query: 994 ttggaattatgccctagaggcaataataaatatagttattattataattcctgtatcaag 1053 |||||| ||||||||||||||||||||||| || |||||||| ||| ||||| | ||| | Sbjct: 5475 ttggaaatatgccctagaggcaataataaa-atggttattatcatatttcctttttcatg 5417 Query: 1054 ataatcgttcattatccatgctataattgtatt 1086 |||||||| || | ||||||||||||||||| Sbjct: 5416 ataatcgtctatcgttcatgctataattgtatt 5384
>emb|Y18784.2|HPUY18784 Hordeum pusillum BARE-1 long terminal repeat DNA (HPUSB) Length = 1792 Score = 73.8 bits (37), Expect = 1e-09 Identities = 83/97 (85%), Gaps = 1/97 (1%) Strand = Plus / Plus Query: 992 tgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatca 1051 |||||||||||||||||||||||||| || ||| |||||||||| ||| | ||| ||| Sbjct: 3 tgttggaattatgccctagaggcaatgat-aatttagttattatcatagtaccttgttca 61 Query: 1052 agataatcgttcattatccatgctataattgtattga 1088 |||||| ||| |||||||||| | |||||||||||| Sbjct: 62 tgataattgtttattatccatgttgtaattgtattga 98
>gb|DQ537335.1| Triticum aestivum clones BAC 1031P08; BAC 754K10; BAC 1344C16, complete sequence Length = 292102 Score = 71.9 bits (36), Expect = 5e-09 Identities = 82/96 (85%), Gaps = 1/96 (1%) Strand = Plus / Plus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 1050 ||||||||| ||||||||||||||||||||||| || ||||||||| || ||||| || Sbjct: 19982 ctgttggaaatatgccctagaggcaataataaa-atggttattattgtatttccttgttc 20040 Query: 1051 aagataatcgttcattatccatgctataattgtatt 1086 | |||||| || ||| | ||||||||||||||||| Sbjct: 20041 atgataattgtctattgttcatgctataattgtatt 20076 Score = 69.9 bits (35), Expect = 2e-08 Identities = 81/95 (85%), Gaps = 1/95 (1%) Strand = Plus / Plus Query: 992 tgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatca 1051 |||||||| ||||||||||||||||||||||| || ||||||||| || ||||| ||| Sbjct: 12795 tgttggaaatatgccctagaggcaataataaa-atggttattattgtatttccttgttca 12853 Query: 1052 agataatcgttcattatccatgctataattgtatt 1086 |||||| || ||| | ||||||||||||||||| Sbjct: 12854 tgataattgtctattgttcatgctataattgtatt 12888 Score = 58.0 bits (29), Expect = 7e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 991 ctgttggaattatgccctagaggcaataataaa 1023 ||||||||| ||||||||||||||||||||||| Sbjct: 69077 ctgttggaaatatgccctagaggcaataataaa 69109 Score = 56.0 bits (28), Expect = 3e-04 Identities = 31/32 (96%) Strand = Plus / Plus Query: 992 tgttggaattatgccctagaggcaataataaa 1023 |||||||| ||||||||||||||||||||||| Sbjct: 62935 tgttggaaatatgccctagaggcaataataaa 62966 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Plus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 278390 ggaaatatgccctagaggcaataataaa 278417 Score = 46.1 bits (23), Expect = 0.27 Identities = 26/27 (96%) Strand = Plus / Minus Query: 996 ggaattatgccctagaggcaataataa 1022 |||| |||||||||||||||||||||| Sbjct: 23110 ggaaatatgccctagaggcaataataa 23084 Score = 46.1 bits (23), Expect = 0.27 Identities = 26/27 (96%) Strand = Plus / Minus Query: 996 ggaattatgccctagaggcaataataa 1022 |||| |||||||||||||||||||||| Sbjct: 43220 ggaaatatgccctagaggcaataataa 43194
>gb|AY951945.1| Triticum monococcum TmBAC 60J11 FR-Am2 locus, genomic sequence Length = 103866 Score = 71.9 bits (36), Expect = 5e-09 Identities = 46/48 (95%), Gaps = 1/48 (2%) Strand = Plus / Minus Query: 992 tgttggaattatgccctagaggcaataataaatatagttattattata 1039 |||||||| |||||||||||||||||||||||| |||||||||||||| Sbjct: 3452 tgttggaaatatgccctagaggcaataataaat-tagttattattata 3406 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Plus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 41010 ggaaatatgccctagaggcaataataaa 41037 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Minus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 43245 ggaaatatgccctagaggcaataataaa 43218 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Minus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 59857 ggaaatatgccctagaggcaataataaa 59830 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Minus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 74583 ggaaatatgccctagaggcaataataaa 74556 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Minus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 81573 ggaaatatgccctagaggcaataataaa 81546 Score = 46.1 bits (23), Expect = 0.27 Identities = 23/23 (100%) Strand = Plus / Plus Query: 1001 tatgccctagaggcaataataaa 1023 ||||||||||||||||||||||| Sbjct: 503 tatgccctagaggcaataataaa 525
>emb|CT009587.1| Triticum turgidum Length = 229209 Score = 69.9 bits (35), Expect = 2e-08 Identities = 82/95 (86%), Gaps = 2/95 (2%) Strand = Plus / Plus Query: 992 tgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatca 1051 |||||||| |||||||||||||||||||||||| || ||||||||||| ||| | |||| Sbjct: 175626 tgttggaaatatgccctagaggcaataataaatgta-ttattattatatttctttgatca 175684 Query: 1052 agataatcgttcattatccatgctataattgtatt 1086 |||||| | || |||| |||||||||| |||||| Sbjct: 175685 tgataattg-tctttattcatgctataactgtatt 175718 Score = 63.9 bits (32), Expect = 1e-06 Identities = 81/96 (84%), Gaps = 1/96 (1%) Strand = Plus / Plus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 1050 ||||||||| ||||||||||||||||||||||| || ||||||||||| ||||| || Sbjct: 27089 ctgttggaaatatgccctagaggcaataataaaagta-ttattattatatttccttgttc 27147 Query: 1051 aagataatcgttcattatccatgctataattgtatt 1086 | |||||| || |||| |||||||||| |||||| Sbjct: 27148 atgataattgtcttttattcatgctataactgtatt 27183 Score = 58.0 bits (29), Expect = 7e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 991 ctgttggaattatgccctagaggcaataataaa 1023 ||||||||| ||||||||||||||||||||||| Sbjct: 182482 ctgttggaaatatgccctagaggcaataataaa 182514 Score = 50.1 bits (25), Expect = 0.017 Identities = 28/29 (96%) Strand = Plus / Plus Query: 996 ggaattatgccctagaggcaataataaat 1024 |||| |||||||||||||||||||||||| Sbjct: 163185 ggaaatatgccctagaggcaataataaat 163213 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Plus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 43203 ggaaatatgccctagaggcaataataaa 43230 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Plus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 53119 ggaaatatgccctagaggcaataataaa 53146 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Plus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 56221 ggaaatatgccctagaggcaataataaa 56248 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Plus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 57903 ggaaatatgccctagaggcaataataaa 57930 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Plus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 64720 ggaaatatgccctagaggcaataataaa 64747 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Plus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 71662 ggaaatatgccctagaggcaataataaa 71689
>gb|DQ537337.1| Triticum aestivum clone BAC 897M20, complete sequence Length = 152010 Score = 67.9 bits (34), Expect = 7e-08 Identities = 82/97 (84%), Gaps = 2/97 (2%) Strand = Plus / Minus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 1050 ||||||||| |||||||||||||||||||||| || |||||||||||| ||| | || Sbjct: 49634 ctgttggaaatatgccctagaggcaataataa--atggttattattatatttctttgttc 49577 Query: 1051 aagataatcgttcattatccatgctataattgtattg 1087 | | |||| || ||||| |||||||||||||||||| Sbjct: 49576 atggtaattgtctattattcatgctataattgtattg 49540 Score = 65.9 bits (33), Expect = 3e-07 Identities = 81/96 (84%), Gaps = 2/96 (2%) Strand = Plus / Minus Query: 992 tgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatca 1051 |||||||| |||||||||||||||||||||| || |||||||||||| ||| | ||| Sbjct: 56667 tgttggaaatatgccctagaggcaataataa--atggttattattatatttctttgttca 56610 Query: 1052 agataatcgttcattatccatgctataattgtattg 1087 | |||| || ||||| |||||||||||||||||| Sbjct: 56609 tggtaattgtctattattcatgctataattgtattg 56574 Score = 60.0 bits (30), Expect = 2e-05 Identities = 33/34 (97%) Strand = Plus / Plus Query: 991 ctgttggaattatgccctagaggcaataataaat 1024 ||||||||| |||||||||||||||||||||||| Sbjct: 109153 ctgttggaaatatgccctagaggcaataataaat 109186 Score = 60.0 bits (30), Expect = 2e-05 Identities = 33/34 (97%) Strand = Plus / Plus Query: 991 ctgttggaattatgccctagaggcaataataaat 1024 ||||||||| |||||||||||||||||||||||| Sbjct: 110506 ctgttggaaatatgccctagaggcaataataaat 110539 Score = 60.0 bits (30), Expect = 2e-05 Identities = 33/34 (97%) Strand = Plus / Plus Query: 991 ctgttggaattatgccctagaggcaataataaat 1024 ||||||||| |||||||||||||||||||||||| Sbjct: 111859 ctgttggaaatatgccctagaggcaataataaat 111892 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Minus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 3674 ggaaatatgccctagaggcaataataaa 3647 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Minus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 37029 ggaaatatgccctagaggcaataataaa 37002 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Minus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 47881 ggaaatatgccctagaggcaataataaa 47854 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Plus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 58139 ggaaatatgccctagaggcaataataaa 58166 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Plus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 90367 ggaaatatgccctagaggcaataataaa 90394 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Plus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 97170 ggaaatatgccctagaggcaataataaa 97197
>gb|AY951944.1| Triticum monococcum TmBAC 21C6 FR-Am2 locus, genomic sequence Length = 190469 Score = 67.9 bits (34), Expect = 7e-08 Identities = 50/54 (92%), Gaps = 1/54 (1%) Strand = Plus / Plus Query: 992 tgttggaattatgccctagaggcaataataaatatagttattattataattcct 1045 |||||||| ||||||||||||||||||||||| || |||||||||||| ||||| Sbjct: 160243 tgttggaaatatgccctagaggcaataataaa-atggttattattatatttcct 160295 Score = 65.9 bits (33), Expect = 3e-07 Identities = 46/49 (93%), Gaps = 1/49 (2%) Strand = Plus / Plus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattata 1039 ||||||||| ||||||||||||||||||||||| || |||||||||||| Sbjct: 48840 ctgttggaaatatgccctagaggcaataataaa-atggttattattata 48887 Score = 63.9 bits (32), Expect = 1e-06 Identities = 45/48 (93%), Gaps = 1/48 (2%) Strand = Plus / Plus Query: 992 tgttggaattatgccctagaggcaataataaatatagttattattata 1039 |||||||| ||||||||||||||||||||||| || |||||||||||| Sbjct: 41881 tgttggaaatatgccctagaggcaataataaa-atggttattattata 41927 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Minus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 158695 ggaaatatgccctagaggcaataataaa 158668
>emb|Z84553.1|HVDS97 H.vulgare BARE-1 long terminal repeat DNA; ID DS97 Length = 753 Score = 67.9 bits (34), Expect = 7e-08 Identities = 74/86 (86%), Gaps = 1/86 (1%) Strand = Plus / Plus Query: 1001 tatgccctagaggcaataataaatatagttattattataattcctgtatcaagataatcg 1060 ||||||||||||||||||||||| || |||||||| ||| || || ||| |||||||| Sbjct: 573 tatgccctagaggcaataataaa-atggttattatcatattttcttgttcatgataatcg 631 Query: 1061 ttcattatccatgctataattgtatt 1086 || ||| | ||||||||||||||||| Sbjct: 632 tttattgttcatgctataattgtatt 657
>gb|DQ995513.1| Hordeum vulgare clone 604d05_c-69 genomic sequence Length = 20922 Score = 65.9 bits (33), Expect = 3e-07 Identities = 83/97 (85%), Gaps = 2/97 (2%) Strand = Plus / Plus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 1050 ||||||||| ||||||||||||||||||||||| || |||||||| ||| ||||| || Sbjct: 1885 ctgttggaaatatgccctagaggcaataataaa-atggttattatcatatttccttgttc 1943 Query: 1051 aagataatcgttcatt-atccatgctataattgtatt 1086 | ||||||| | ||| || ||||||||||||||||| Sbjct: 1944 atgataatcatctattgattcatgctataattgtatt 1980
>gb|AY485644.1| Triticum monococcum phosphatidylserine decarboxylase, ZCCT2, ZCCT1, and SNF2P genes, complete cds; nucellin pseudogene, complete sequence; putative transposase, phosphatidylinositol phosphatidylcholine transfer protein sec14 cytosolic-like protein, and phytochrome P450-like protein genes, complete cds; and unknown genes Length = 438828 Score = 63.9 bits (32), Expect = 1e-06 Identities = 78/92 (84%), Gaps = 1/92 (1%) Strand = Plus / Plus Query: 992 tgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatca 1051 |||||||| |||||||||||||||| |||||| || ||||||||||| ||||| ||| Sbjct: 125306 tgttggaaatatgccctagaggcaacaataaa-atgattattattatatttccttgttca 125364 Query: 1052 agataatcgttcattatccatgctataattgt 1083 |||||| || ||||| |||||||||||||| Sbjct: 125365 tgataattgtctattattcatgctataattgt 125396 Score = 54.0 bits (27), Expect = 0.001 Identities = 77/92 (83%), Gaps = 5/92 (5%) Strand = Plus / Minus Query: 996 ggaattatgccctagaggcaataataaatatagttattattataattcc-tgtatcaaga 1054 |||| |||||||||||||||||||||| |||||||||| || |||| | ||||| || Sbjct: 200801 ggaaatatgccctagaggcaataataa----agttattattttatttccttatatcatga 200746 Query: 1055 taatcgttcattatccatgctataattgtatt 1086 ||| ||| ||||| ||||||| ||||||||| Sbjct: 200745 taaatgtttattattcatgctagaattgtatt 200714 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Plus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 5986 ggaaatatgccctagaggcaataataaa 6013 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Plus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 31049 ggaaatatgccctagaggcaataataaa 31076 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Plus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 33189 ggaaatatgccctagaggcaataataaa 33216 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Minus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 41333 ggaaatatgccctagaggcaataataaa 41306 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Plus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 41493 ggaaatatgccctagaggcaataataaa 41520 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Minus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 51875 ggaaatatgccctagaggcaataataaa 51848 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Minus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 58707 ggaaatatgccctagaggcaataataaa 58680 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Minus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 133680 ggaaatatgccctagaggcaataataaa 133653 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Minus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 140511 ggaaatatgccctagaggcaataataaa 140484 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Plus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 218202 ggaaatatgccctagaggcaataataaa 218229 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Minus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 266131 ggaaatatgccctagaggcaataataaa 266104 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Minus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 273125 ggaaatatgccctagaggcaataataaa 273098 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Plus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 408241 ggaaatatgccctagaggcaataataaa 408268 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Plus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 414997 ggaaatatgccctagaggcaataataaa 415024 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Minus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 417605 ggaaatatgccctagaggcaataataaa 417578 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Minus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 424582 ggaaatatgccctagaggcaataataaa 424555 Score = 46.1 bits (23), Expect = 0.27 Identities = 26/27 (96%) Strand = Plus / Plus Query: 996 ggaattatgccctagaggcaataataa 1022 |||| |||||||||||||||||||||| Sbjct: 103743 ggaaatatgccctagaggcaataataa 103769 Score = 46.1 bits (23), Expect = 0.27 Identities = 26/27 (96%) Strand = Plus / Plus Query: 996 ggaattatgccctagaggcaataataa 1022 |||| |||||||||||||||||||||| Sbjct: 114815 ggaaatatgccctagaggcaataataa 114841 Score = 42.1 bits (21), Expect = 4.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1064 attatccatgctataattgtattga 1088 ||||| ||||||||||||||||||| Sbjct: 159143 attattcatgctataattgtattga 159167
>gb|AF488415.1| Triticum monococcum chromosome 7Am BAC 5K14 complete sequence Length = 168746 Score = 63.9 bits (32), Expect = 1e-06 Identities = 82/96 (85%), Gaps = 2/96 (2%) Strand = Plus / Minus Query: 991 ctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatc 1050 ||||||||| ||||||||||||||||||||||| | ||||||||||| ||||| || Sbjct: 117001 ctgttggaaatatgccctagaggcaataataaa-agcattattattatatttccttgttc 116943 Query: 1051 aagataatcgttcattatccatgctataattgtatt 1086 | |||||| | || |||| ||||||||||||||||| Sbjct: 116942 atgataattg-tctttattcatgctataattgtatt 116908 Score = 58.0 bits (29), Expect = 7e-05 Identities = 82/97 (84%), Gaps = 2/97 (2%) Strand = Plus / Minus Query: 990 tctgttggaattatgccctagaggcaataataaatatagttattattataattcctgtat 1049 |||||||||| |||| |||||||||||||||||| | ||||||||||| ||||| | Sbjct: 124013 tctgttggaaatatgacctagaggcaataataaa-agcattattattatatttccttgtt 123955 Query: 1050 caagataatcgttcattatccatgctataattgtatt 1086 || |||||| | || |||| ||||||||||||||||| Sbjct: 123954 catgataattg-tctttattcatgctataattgtatt 123919 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Minus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 1882 ggaaatatgccctagaggcaataataaa 1855 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Minus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 8748 ggaaatatgccctagaggcaataataaa 8721 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Minus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 158466 ggaaatatgccctagaggcaataataaa 158439 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Minus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 166534 ggaaatatgccctagaggcaataataaa 166507
>emb|Y18776.2|HMAY18776 Hordeum marinum BARE-1 long terminal repeat DNA (HMARA) Length = 1879 Score = 63.9 bits (32), Expect = 1e-06 Identities = 79/92 (85%), Gaps = 2/92 (2%) Strand = Plus / Plus Query: 998 aattatgccctagaggcaat-aataaatatagttattattataattcctgtatcaagata 1056 |||||||||||||||||||| |||||| || ||||||||||| ||||| ||| |||| Sbjct: 1 aattatgccctagaggcaatgaataaa-atgtttattattatatttccttgttcatgata 59 Query: 1057 atcgttcattatccatgctataattgtattga 1088 |||||| ||||||||||| ||||||||||| Sbjct: 60 atcgtttcttatccatgctggaattgtattga 91
>emb|CT009588.1| Triticum turgidum Length = 136372 Score = 61.9 bits (31), Expect = 5e-06 Identities = 80/95 (84%), Gaps = 1/95 (1%) Strand = Plus / Minus Query: 992 tgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatca 1051 |||||||| ||||||||||||||||||||||| | |||||||||||| ||||| ||| Sbjct: 56628 tgttggaaatatgccctagaggcaataataaa-agtgttattattatatttccttgttca 56570 Query: 1052 agataatcgttcattatccatgctataattgtatt 1086 |||||| || |||| |||||||||| |||||| Sbjct: 56569 tgataattgtcttttattcatgctataactgtatt 56535 Score = 56.0 bits (28), Expect = 3e-04 Identities = 31/32 (96%) Strand = Plus / Minus Query: 992 tgttggaattatgccctagaggcaataataaa 1023 |||||||| ||||||||||||||||||||||| Sbjct: 74333 tgttggaaatatgccctagaggcaataataaa 74302 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Plus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 93484 ggaaatatgccctagaggcaataataaa 93511 Score = 44.1 bits (22), Expect = 1.1 Identities = 28/30 (93%) Strand = Plus / Minus Query: 994 ttggaattatgccctagaggcaataataaa 1023 |||||| ||||||||||||||| ||||||| Sbjct: 67302 ttggaaatatgccctagaggcagtaataaa 67273
>emb|CT009585.1| Triticum aestivum Length = 103189 Score = 61.9 bits (31), Expect = 5e-06 Identities = 80/95 (84%), Gaps = 1/95 (1%) Strand = Plus / Minus Query: 992 tgttggaattatgccctagaggcaataataaatatagttattattataattcctgtatca 1051 |||||||| ||||||||||||||||||||||| | |||||||||||| ||||| ||| Sbjct: 22932 tgttggaaatatgccctagaggcaataataaa-agtgttattattatatttccttgttca 22874 Query: 1052 agataatcgttcattatccatgctataattgtatt 1086 |||||| || |||| |||||||||| |||||| Sbjct: 22873 tgataattgtcttttattcatgctataactgtatt 22839 Score = 56.0 bits (28), Expect = 3e-04 Identities = 31/32 (96%) Strand = Plus / Minus Query: 992 tgttggaattatgccctagaggcaataataaa 1023 |||||||| ||||||||||||||||||||||| Sbjct: 40636 tgttggaaatatgccctagaggcaataataaa 40605 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Plus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 59792 ggaaatatgccctagaggcaataataaa 59819 Score = 44.1 bits (22), Expect = 1.1 Identities = 28/30 (93%) Strand = Plus / Minus Query: 994 ttggaattatgccctagaggcaataataaa 1023 |||||| ||||||||||||||| ||||||| Sbjct: 33604 ttggaaatatgccctagaggcagtaataaa 33575
>emb|Y18785.2|HPUY18785 Hordeum pusillum BARE-1 long terminal repeat DNA (HPUSC) Length = 1902 Score = 61.9 bits (31), Expect = 5e-06 Identities = 71/83 (85%), Gaps = 1/83 (1%) Strand = Plus / Plus Query: 1006 cctagaggcaataataaatatagttattattataattcctgtatcaagataatcgttcat 1065 |||||||||||| |||| | |||||| ||| ||| ||||| ||| |||||| ||| || Sbjct: 15 cctagaggcaatgataatt-tagttactatcatatttccttgttcatgataatagtttat 73 Query: 1066 tatccatgctataattgtattga 1088 ||||||||||||||||||||||| Sbjct: 74 tatccatgctataattgtattga 96
>ref|NM_001070557.1| Oryza sativa (japonica cultivar-group) Os10g0104800 (Os10g0104800) mRNA, complete cds Length = 2158 Score = 60.0 bits (30), Expect = 2e-05 Identities = 81/98 (82%) Strand = Plus / Plus Query: 752 gagtacgcctcgacggggaagctgacggagaaatcagacgtgttcttcttcggggtggtg 811 ||||||||||| || || ||||| || ||||| || ||||| |||| |||||| || || Sbjct: 1435 gagtacgcctccaccggcaagctcaccgagaagtccgacgtcttctccttcggcgtcatg 1494 Query: 812 ctcctggagctcatcaccggccggaagcccgtcgacac 849 || ||||||||| ||||||| ||| |||||||||||| Sbjct: 1495 ctgctggagctcctcaccgggcggcggcccgtcgacac 1532 Score = 42.1 bits (21), Expect = 4.2 Identities = 54/65 (83%) Strand = Plus / Plus Query: 471 gcctacctgcacgaggactgtcatccaaggatcatccacggggacatcaagtcatccaac 530 |||||||| ||||| ||||| || || ||||||||||| | ||||||||| | ||||| Sbjct: 1255 gcctacctccacgaagactgccacccgcggatcatccaccgcgacatcaaggcggccaac 1314 Query: 531 atcct 535 ||||| Sbjct: 1315 atcct 1319
>emb|CT009735.1| Triticum aestivum Length = 187340 Score = 60.0 bits (30), Expect = 2e-05 Identities = 33/34 (97%) Strand = Plus / Plus Query: 991 ctgttggaattatgccctagaggcaataataaat 1024 ||||||||| |||||||||||||||||||||||| Sbjct: 76418 ctgttggaaatatgccctagaggcaataataaat 76451 Score = 54.0 bits (27), Expect = 0.001 Identities = 30/31 (96%) Strand = Plus / Plus Query: 994 ttggaattatgccctagaggcaataataaat 1024 |||||| |||||||||||||||||||||||| Sbjct: 83468 ttggaaatatgccctagaggcaataataaat 83498 Score = 52.0 bits (26), Expect = 0.004 Identities = 32/34 (94%) Strand = Plus / Minus Query: 991 ctgttggaattatgccctagaggcaataataaat 1024 ||||||||| ||||||||| |||||||||||||| Sbjct: 104220 ctgttggaaatatgccctaaaggcaataataaat 104187 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Plus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 145165 ggaaatatgccctagaggcaataataaa 145192 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Plus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 155695 ggaaatatgccctagaggcaataataaa 155722 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Minus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 175844 ggaaatatgccctagaggcaataataaa 175817 Score = 46.1 bits (23), Expect = 0.27 Identities = 23/23 (100%) Strand = Plus / Minus Query: 1001 tatgccctagaggcaataataaa 1023 ||||||||||||||||||||||| Sbjct: 182676 tatgccctagaggcaataataaa 182654 Score = 42.1 bits (21), Expect = 4.2 Identities = 30/33 (90%) Strand = Plus / Minus Query: 992 tgttggaattatgccctagaggcaataataaat 1024 ||||| || |||||| ||||||||||||||||| Sbjct: 111264 tgttgcaaatatgccgtagaggcaataataaat 111232
>gb|AC069324.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0071K19, complete sequence Length = 174752 Score = 60.0 bits (30), Expect = 2e-05 Identities = 81/98 (82%) Strand = Plus / Minus Query: 752 gagtacgcctcgacggggaagctgacggagaaatcagacgtgttcttcttcggggtggtg 811 ||||||||||| || || ||||| || ||||| || ||||| |||| |||||| || || Sbjct: 117286 gagtacgcctccaccggcaagctcaccgagaagtccgacgtcttctccttcggcgtcatg 117227 Query: 812 ctcctggagctcatcaccggccggaagcccgtcgacac 849 || ||||||||| ||||||| ||| |||||||||||| Sbjct: 117226 ctgctggagctcctcaccgggcggcggcccgtcgacac 117189 Score = 42.1 bits (21), Expect = 4.2 Identities = 54/65 (83%) Strand = Plus / Minus Query: 471 gcctacctgcacgaggactgtcatccaaggatcatccacggggacatcaagtcatccaac 530 |||||||| ||||| ||||| || || ||||||||||| | ||||||||| | ||||| Sbjct: 117466 gcctacctccacgaagactgccacccgcggatcatccaccgcgacatcaaggcggccaac 117407 Query: 531 atcct 535 ||||| Sbjct: 117406 atcct 117402
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone Pseudo10p0.0-10p4.4, complete sequence Length = 2331000 Score = 60.0 bits (30), Expect = 2e-05 Identities = 81/98 (82%) Strand = Plus / Minus Query: 752 gagtacgcctcgacggggaagctgacggagaaatcagacgtgttcttcttcggggtggtg 811 ||||||||||| || || ||||| || ||||| || ||||| |||| |||||| || || Sbjct: 352228 gagtacgcctccaccggcaagctcaccgagaagtccgacgtcttctccttcggcgtcatg 352169 Query: 812 ctcctggagctcatcaccggccggaagcccgtcgacac 849 || ||||||||| ||||||| ||| |||||||||||| Sbjct: 352168 ctgctggagctcctcaccgggcggcggcccgtcgacac 352131 Score = 42.1 bits (21), Expect = 4.2 Identities = 54/65 (83%) Strand = Plus / Minus Query: 471 gcctacctgcacgaggactgtcatccaaggatcatccacggggacatcaagtcatccaac 530 |||||||| ||||| ||||| || || ||||||||||| | ||||||||| | ||||| Sbjct: 352408 gcctacctccacgaagactgccacccgcggatcatccaccgcgacatcaaggcggccaac 352349 Query: 531 atcct 535 ||||| Sbjct: 352348 atcct 352344
>emb|CR626934.1| Triticum aestivum Length = 94398 Score = 60.0 bits (30), Expect = 2e-05 Identities = 33/34 (97%) Strand = Plus / Plus Query: 991 ctgttggaattatgccctagaggcaataataaat 1024 ||||||||| |||||||||||||||||||||||| Sbjct: 50101 ctgttggaaatatgccctagaggcaataataaat 50134 Score = 54.0 bits (27), Expect = 0.001 Identities = 30/31 (96%) Strand = Plus / Plus Query: 994 ttggaattatgccctagaggcaataataaat 1024 |||||| |||||||||||||||||||||||| Sbjct: 57151 ttggaaatatgccctagaggcaataataaat 57181 Score = 52.0 bits (26), Expect = 0.004 Identities = 32/34 (94%) Strand = Plus / Minus Query: 991 ctgttggaattatgccctagaggcaataataaat 1024 ||||||||| ||||||||| |||||||||||||| Sbjct: 77903 ctgttggaaatatgccctaaaggcaataataaat 77870 Score = 42.1 bits (21), Expect = 4.2 Identities = 30/33 (90%) Strand = Plus / Minus Query: 992 tgttggaattatgccctagaggcaataataaat 1024 ||||| || |||||| ||||||||||||||||| Sbjct: 84947 tgttgcaaatatgccgtagaggcaataataaat 84915
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10 Length = 22685906 Score = 60.0 bits (30), Expect = 2e-05 Identities = 81/98 (82%) Strand = Plus / Minus Query: 752 gagtacgcctcgacggggaagctgacggagaaatcagacgtgttcttcttcggggtggtg 811 ||||||||||| || || ||||| || ||||| || ||||| |||| |||||| || || Sbjct: 352228 gagtacgcctccaccggcaagctcaccgagaagtccgacgtcttctccttcggcgtcatg 352169 Query: 812 ctcctggagctcatcaccggccggaagcccgtcgacac 849 || ||||||||| ||||||| ||| |||||||||||| Sbjct: 352168 ctgctggagctcctcaccgggcggcggcccgtcgacac 352131 Score = 42.1 bits (21), Expect = 4.2 Identities = 54/65 (83%) Strand = Plus / Minus Query: 471 gcctacctgcacgaggactgtcatccaaggatcatccacggggacatcaagtcatccaac 530 |||||||| ||||| ||||| || || ||||||||||| | ||||||||| | ||||| Sbjct: 352408 gcctacctccacgaagactgccacccgcggatcatccaccgcgacatcaaggcggccaac 352349 Query: 531 atcct 535 ||||| Sbjct: 352348 atcct 352344
>dbj|AK100339.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023081I19, full insert sequence Length = 2160 Score = 60.0 bits (30), Expect = 2e-05 Identities = 81/98 (82%) Strand = Plus / Plus Query: 752 gagtacgcctcgacggggaagctgacggagaaatcagacgtgttcttcttcggggtggtg 811 ||||||||||| || || ||||| || ||||| || ||||| |||| |||||| || || Sbjct: 1437 gagtacgcctccaccggcaagctcaccgagaagtccgacgtcttctccttcggcgtcatg 1496 Query: 812 ctcctggagctcatcaccggccggaagcccgtcgacac 849 || ||||||||| ||||||| ||| |||||||||||| Sbjct: 1497 ctgctggagctcctcaccgggcggcggcccgtcgacac 1534 Score = 42.1 bits (21), Expect = 4.2 Identities = 54/65 (83%) Strand = Plus / Plus Query: 471 gcctacctgcacgaggactgtcatccaaggatcatccacggggacatcaagtcatccaac 530 |||||||| ||||| ||||| || || ||||||||||| | ||||||||| | ||||| Sbjct: 1257 gcctacctccacgaagactgccacccgcggatcatccaccgcgacatcaaggcggccaac 1316 Query: 531 atcct 535 ||||| Sbjct: 1317 atcct 1321
>emb|CT831640.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA034J04, full insert sequence Length = 1526 Score = 58.0 bits (29), Expect = 7e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 498 aggatcatccacggggacatcaagtcatccaacatccttctcaacgacaactt 550 |||||||||||| ||||||||||| |||||||| | ||||||| |||| |||| Sbjct: 766 aggatcatccacagggacatcaaggcatccaacgtgcttctcaccgacgactt 818
>ref|NM_001064967.1| Oryza sativa (japonica cultivar-group) Os06g0693200 (Os06g0693200) mRNA, complete cds Length = 1567 Score = 58.0 bits (29), Expect = 7e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 498 aggatcatccacggggacatcaagtcatccaacatccttctcaacgacaactt 550 |||||||||||| ||||||||||| |||||||| | ||||||| |||| |||| Sbjct: 805 aggatcatccacagggacatcaaggcatccaacgtgcttctcaccgacgactt 857
>gb|AF497474.1| Aegilops tauschii leucine-rich-like protein gene, partial cds; seed globulin (Glo-2) gene, complete cds; HMW-glutenin (Glu-Dty) gene, Glu-Dty-T2 allele, complete cds; and HMW-glutenin (HMW) gene, HMW-Dtx2 allele, complete cds Length = 102842 Score = 58.0 bits (29), Expect = 7e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 992 tgttggaattatgccctagaggcaataataaat 1024 |||||||| |||||||||||||||||||||||| Sbjct: 92117 tgttggaaatatgccctagaggcaataataaat 92085 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Minus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 18390 ggaaatatgccctagaggcaataataaa 18363 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Minus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 29236 ggaaatatgccctagaggcaataataaa 29209 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Plus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 30724 ggaaatatgccctagaggcaataataaa 30751 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Plus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 37533 ggaaatatgccctagaggcaataataaa 37560 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Plus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 70353 ggaaatatgccctagaggcaataataaa 70380 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Plus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 71182 ggaaatatgccctagaggcaataataaa 71209 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Plus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 78253 ggaaatatgccctagaggcaataataaa 78280 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Plus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 82834 ggaaatatgccctagaggcaataataaa 82861
>dbj|AP005457.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0532H03 Length = 166128 Score = 58.0 bits (29), Expect = 7e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 498 aggatcatccacggggacatcaagtcatccaacatccttctcaacgacaactt 550 |||||||||||| ||||||||||| |||||||| | ||||||| |||| |||| Sbjct: 165557 aggatcatccacagggacatcaaggcatccaacgtgcttctcaccgacgactt 165609
>dbj|AP003770.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0550B04 Length = 150131 Score = 58.0 bits (29), Expect = 7e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 498 aggatcatccacggggacatcaagtcatccaacatccttctcaacgacaactt 550 |||||||||||| ||||||||||| |||||||| | ||||||| |||| |||| Sbjct: 50002 aggatcatccacagggacatcaaggcatccaacgtgcttctcaccgacgactt 50054
>dbj|AK105794.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-H11, full insert sequence Length = 1567 Score = 58.0 bits (29), Expect = 7e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 498 aggatcatccacggggacatcaagtcatccaacatccttctcaacgacaactt 550 |||||||||||| ||||||||||| |||||||| | ||||||| |||| |||| Sbjct: 805 aggatcatccacagggacatcaaggcatccaacgtgcttctcaccgacgactt 857
>dbj|AK059727.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-201-C12, full insert sequence Length = 1064 Score = 58.0 bits (29), Expect = 7e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 498 aggatcatccacggggacatcaagtcatccaacatccttctcaacgacaactt 550 |||||||||||| ||||||||||| |||||||| | ||||||| |||| |||| Sbjct: 830 aggatcatccacagggacatcaaggcatccaacgtgcttctcaccgacgactt 882
>emb|X06952.1|TAREPTA2 Wheat repetitive DNA pTa2 Length = 150 Score = 58.0 bits (29), Expect = 7e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 991 ctgttggaattatgccctagaggcaataataaa 1023 ||||||||| ||||||||||||||||||||||| Sbjct: 77 ctgttggaaatatgccctagaggcaataataaa 109
>ref|NM_001055977.1| Oryza sativa (japonica cultivar-group) Os03g0226800 (Os03g0226800) mRNA, complete cds Length = 5286 Score = 56.0 bits (28), Expect = 3e-04 Identities = 70/84 (83%) Strand = Plus / Plus Query: 752 gagtacgcctcgacggggaagctgacggagaaatcagacgtgttcttcttcggggtggtg 811 |||||||| |||| || ||||||||||| ||||| ||||| |||| |||||| || || Sbjct: 4756 gagtacgcgtcgagcggcaagctgacggacaaatcggacgtcttctccttcggcgtcatg 4815 Query: 812 ctcctggagctcatcaccggccgg 835 || || ||||| |||||||||||| Sbjct: 4816 ctgctcgagctgatcaccggccgg 4839 Score = 44.1 bits (22), Expect = 1.1 Identities = 70/86 (81%) Strand = Plus / Plus Query: 492 catccaaggatcatccacggggacatcaagtcatccaacatccttctcaacgacaactta 551 ||||| |||||||||||| | ||||||||| | |||||||||| | |||| || || Sbjct: 4597 catcctaggatcatccaccgtgacatcaaggcggccaacatcctcttggacgagaatttc 4656 Query: 552 gaagctcaggtcgcggatttcgggct 577 || ||| |||| |||||||||||||| Sbjct: 4657 gatgctaaggttgcggatttcgggct 4682
>gb|AC126057.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBb0026D16, complete sequence Length = 129166 Score = 56.0 bits (28), Expect = 3e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 500 gatcatccacggggacatcaagtcatccaacatccttctc 539 |||||||||| | ||||||||| ||||||||||||||||| Sbjct: 98716 gatcatccaccgtgacatcaagccatccaacatccttctc 98755 Score = 48.1 bits (24), Expect = 0.068 Identities = 33/36 (91%) Strand = Plus / Plus Query: 504 atccacggggacatcaagtcatccaacatccttctc 539 |||||| | ||||||||| ||||||||||||||||| Sbjct: 111364 atccaccgcgacatcaagacatccaacatccttctc 111399
>gb|AC104473.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1626B05, complete sequence Length = 127946 Score = 56.0 bits (28), Expect = 3e-04 Identities = 70/84 (83%) Strand = Plus / Plus Query: 752 gagtacgcctcgacggggaagctgacggagaaatcagacgtgttcttcttcggggtggtg 811 |||||||| |||| || ||||||||||| ||||| ||||| |||| |||||| || || Sbjct: 21563 gagtacgcgtcgagcggcaagctgacggacaaatcggacgtcttctccttcggcgtcatg 21622 Query: 812 ctcctggagctcatcaccggccgg 835 || || ||||| |||||||||||| Sbjct: 21623 ctgctcgagctgatcaccggccgg 21646
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11 Length = 28386948 Score = 56.0 bits (28), Expect = 3e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 500 gatcatccacggggacatcaagtcatccaacatccttctc 539 |||||||||| | ||||||||| ||||||||||||||||| Sbjct: 25870855 gatcatccaccgtgacatcaagccatccaacatccttctc 25870894 Score = 54.0 bits (27), Expect = 0.001 Identities = 27/27 (100%) Strand = Plus / Minus Query: 799 cttcggggtggtgctcctggagctcat 825 ||||||||||||||||||||||||||| Sbjct: 6305471 cttcggggtggtgctcctggagctcat 6305445 Score = 48.1 bits (24), Expect = 0.068 Identities = 57/68 (83%) Strand = Plus / Minus Query: 769 gaagctgacggagaaatcagacgtgttcttcttcggggtggtgctcctggagctcatcac 828 |||| |||||||||| | ||||||| | |||||| || ||||| ||||||||| |||| Sbjct: 6934394 gaaggtgacggagaagacggacgtgtacagcttcggcgtcgtgctgctggagctcgtcac 6934335 Query: 829 cggccgga 836 |||||||| Sbjct: 6934334 cggccgga 6934327 Score = 48.1 bits (24), Expect = 0.068 Identities = 33/36 (91%) Strand = Plus / Plus Query: 504 atccacggggacatcaagtcatccaacatccttctc 539 |||||| | ||||||||| ||||||||||||||||| Sbjct: 25883503 atccaccgcgacatcaagacatccaacatccttctc 25883538 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Plus Query: 802 cggggtggtgctcctggagctcatcacc 829 |||||| ||||||||||||||||||||| Sbjct: 27598884 cggggtcgtgctcctggagctcatcacc 27598911 Score = 46.1 bits (23), Expect = 0.27 Identities = 26/27 (96%) Strand = Plus / Plus Query: 803 ggggtggtgctcctggagctcatcacc 829 ||||| ||||||||||||||||||||| Sbjct: 27745780 ggggtcgtgctcctggagctcatcacc 27745806 Score = 44.1 bits (22), Expect = 1.1 Identities = 40/46 (86%) Strand = Plus / Minus Query: 500 gatcatccacggggacatcaagtcatccaacatccttctcaacgac 545 |||||||||| | ||||||||||| |||||||||| ||| ||||| Sbjct: 6934648 gatcatccaccgcgacatcaagtccaccaacatcctcctcgacgac 6934603 Score = 42.1 bits (21), Expect = 4.2 Identities = 39/45 (86%) Strand = Plus / Minus Query: 501 atcatccacggggacatcaagtcatccaacatccttctcaacgac 545 ||||||||| | ||||||||||| |||||||||| ||| ||||| Sbjct: 6305710 atcatccaccgcgacatcaagtcggccaacatcctgctcgacgac 6305666 Score = 42.1 bits (21), Expect = 4.2 Identities = 39/45 (86%) Strand = Plus / Plus Query: 788 gacgtgttcttcttcggggtggtgctcctggagctcatcaccggc 832 ||||||| || | |||| || ||||||||||||||| |||||||| Sbjct: 19888501 gacgtgtactccctcggcgtcgtgctcctggagctcgtcaccggc 19888545
>gb|AF029897.1|AF029897 Triticum aestivum acetyl-coenzyme A carboxylase (Acc-1,1) gene, nuclear gene encoding plastid protein, partial cds Length = 9285 Score = 56.0 bits (28), Expect = 3e-04 Identities = 31/32 (96%) Strand = Plus / Minus Query: 992 tgttggaattatgccctagaggcaataataaa 1023 |||||||| ||||||||||||||||||||||| Sbjct: 231 tgttggaaatatgccctagaggcaataataaa 200
>ref|NM_001074059.1| Oryza sativa (japonica cultivar-group) Os11g0222000 (Os11g0222000) mRNA, complete cds Length = 1125 Score = 54.0 bits (27), Expect = 0.001 Identities = 27/27 (100%) Strand = Plus / Plus Query: 799 cttcggggtggtgctcctggagctcat 825 ||||||||||||||||||||||||||| Sbjct: 741 cttcggggtggtgctcctggagctcat 767 Score = 42.1 bits (21), Expect = 4.2 Identities = 39/45 (86%) Strand = Plus / Plus Query: 501 atcatccacggggacatcaagtcatccaacatccttctcaacgac 545 ||||||||| | ||||||||||| |||||||||| ||| ||||| Sbjct: 502 atcatccaccgcgacatcaagtcggccaacatcctgctcgacgac 546
>gb|AF326781.1| Triticum monococcum actin (ACT-1) gene, partial cds; putative chromosome condensation factor (CCF), putative resistance protein (RGA-2), putative resistance protein (RGA2) and putative nodulin-like-like protein (NLL) gene, complete cds; and retrotransposons Josephine, Angela-2, Angela-4, Heidi, Greti, Angela-3, Fatima, Erika-1, Angela-6, Angela-5, Barbara, Isabelle, Erika-2, and Claudia Length = 211009 Score = 54.0 bits (27), Expect = 0.001 Identities = 78/92 (84%), Gaps = 6/92 (6%) Strand = Plus / Plus Query: 996 ggaattatgccctagaggcaataataaatatagttattattataattcc-tgtatcaaga 1054 |||| |||||||||||||||||||||| |||||||||| || |||| ||||||| || Sbjct: 114235 ggaaatatgccctagaggcaataataa----agttattatt-tatttccttgtatcatga 114289 Query: 1055 taatcgttcattatccatgctataattgtatt 1086 ||| ||| ||||| ||||||| ||||||||| Sbjct: 114290 taaatgtttattattcatgctagaattgtatt 114321 Score = 54.0 bits (27), Expect = 0.001 Identities = 78/92 (84%), Gaps = 6/92 (6%) Strand = Plus / Plus Query: 996 ggaattatgccctagaggcaataataaatatagttattattataattcc-tgtatcaaga 1054 |||| |||||||||||||||||||||| |||||||||| || |||| ||||||| || Sbjct: 123708 ggaaatatgccctagaggcaataataa----agttattatt-tatttccttgtatcatga 123762 Query: 1055 taatcgttcattatccatgctataattgtatt 1086 ||| ||| ||||| ||||||| ||||||||| Sbjct: 123763 taaatgtttattattcatgctagaattgtatt 123794 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Minus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 10430 ggaaatatgccctagaggcaataataaa 10403 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Minus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 45535 ggaaatatgccctagaggcaataataaa 45508 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Minus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 52079 ggaaatatgccctagaggcaataataaa 52052 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Minus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 99837 ggaaatatgccctagaggcaataataaa 99810 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Minus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 140664 ggaaatatgccctagaggcaataataaa 140637 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Minus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 149006 ggaaatatgccctagaggcaataataaa 148979 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Minus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 189022 ggaaatatgccctagaggcaataataaa 188995 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Minus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 191122 ggaaatatgccctagaggcaataataaa 191095 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1002 atgccctagaggcaataataaa 1023 |||||||||||||||||||||| Sbjct: 133839 atgccctagaggcaataataaa 133818
>gb|AC123524.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0052C03, complete sequence Length = 157178 Score = 54.0 bits (27), Expect = 0.001 Identities = 27/27 (100%) Strand = Plus / Minus Query: 799 cttcggggtggtgctcctggagctcat 825 ||||||||||||||||||||||||||| Sbjct: 88749 cttcggggtggtgctcctggagctcat 88723 Score = 42.1 bits (21), Expect = 4.2 Identities = 39/45 (86%) Strand = Plus / Minus Query: 501 atcatccacggggacatcaagtcatccaacatccttctcaacgac 545 ||||||||| | ||||||||||| |||||||||| ||| ||||| Sbjct: 88988 atcatccaccgcgacatcaagtcggccaacatcctgctcgacgac 88944
>gb|AY107551.1| Zea mays PCO090593 mRNA sequence Length = 798 Score = 54.0 bits (27), Expect = 0.001 Identities = 42/47 (89%) Strand = Plus / Plus Query: 799 cttcggggtggtgctcctggagctcatcaccggccggaagcccgtcg 845 |||||| |||||||| |||||||||||| |||| || |||||||||| Sbjct: 126 cttcggcgtggtgctgctggagctcatcgccgggcgcaagcccgtcg 172
>gb|AC118284.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1087_C03, complete sequence Length = 101218 Score = 52.0 bits (26), Expect = 0.004 Identities = 32/34 (94%) Strand = Plus / Minus Query: 799 cttcggggtggtgctcctggagctcatcaccggc 832 |||||||||||||||||| ||||| ||||||||| Sbjct: 93881 cttcggggtggtgctcctcgagctgatcaccggc 93848
>gb|AC144740.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0075A10, complete sequence Length = 171101 Score = 52.0 bits (26), Expect = 0.004 Identities = 32/34 (94%) Strand = Plus / Minus Query: 799 cttcggggtggtgctcctggagctcatcaccggc 832 |||||||||||||||||| ||||| ||||||||| Sbjct: 56529 cttcggggtggtgctcctcgagctgatcaccggc 56496
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5 Length = 29737217 Score = 52.0 bits (26), Expect = 0.004 Identities = 32/34 (94%) Strand = Plus / Minus Query: 799 cttcggggtggtgctcctggagctcatcaccggc 832 |||||||||||||||||| ||||| ||||||||| Sbjct: 25822587 cttcggggtggtgctcctcgagctgatcaccggc 25822554 Score = 46.1 bits (23), Expect = 0.27 Identities = 26/27 (96%) Strand = Plus / Plus Query: 465 gggttggcctacctgcacgaggactgt 491 |||||||||||||||||||| |||||| Sbjct: 25415558 gggttggcctacctgcacgaagactgt 25415584 Score = 42.1 bits (21), Expect = 4.2 Identities = 36/41 (87%) Strand = Plus / Minus Query: 492 catccaaggatcatccacggggacatcaagtcatccaacat 532 ||||||||||| |||||| | ||||||||||| || ||||| Sbjct: 36575 catccaaggataatccaccgagacatcaagtcctcaaacat 36535 Score = 42.1 bits (21), Expect = 4.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 754 gtacgcctcgacggggaagctgacg 778 |||||| |||||||||||||||||| Sbjct: 19258109 gtacgcgtcgacggggaagctgacg 19258133 Score = 42.1 bits (21), Expect = 4.2 Identities = 42/49 (85%) Strand = Plus / Minus Query: 500 gatcatccacggggacatcaagtcatccaacatccttctcaacgacaac 548 |||||||||| | ||||||||||| |||||||||| ||| || ||||| Sbjct: 23755561 gatcatccaccgcgacatcaagtccaccaacatcctcctcgacaacaac 23755513
>gb|AF446141.1| Aegilops tauschii LZ-NBS-LRR class RGA, NBS-LRR class RGA, HCBT-like putative defense response protein, and putative alliin lyase genes, complete cds; and unknown genes Length = 106618 Score = 52.0 bits (26), Expect = 0.004 Identities = 26/26 (100%) Strand = Plus / Plus Query: 1001 tatgccctagaggcaataataaatat 1026 |||||||||||||||||||||||||| Sbjct: 472 tatgccctagaggcaataataaatat 497 Score = 52.0 bits (26), Expect = 0.004 Identities = 26/26 (100%) Strand = Plus / Plus Query: 1001 tatgccctagaggcaataataaatat 1026 |||||||||||||||||||||||||| Sbjct: 7919 tatgccctagaggcaataataaatat 7944
>dbj|AK100082.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002E24, full insert sequence Length = 3293 Score = 52.0 bits (26), Expect = 0.004 Identities = 32/34 (94%) Strand = Plus / Plus Query: 799 cttcggggtggtgctcctggagctcatcaccggc 832 |||||||||||||||||| ||||| ||||||||| Sbjct: 2712 cttcggggtggtgctcctcgagctgatcaccggc 2745
>dbj|AK071821.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023114J15, full insert sequence Length = 1977 Score = 52.0 bits (26), Expect = 0.004 Identities = 81/98 (82%), Gaps = 1/98 (1%) Strand = Plus / Plus Query: 752 gagtacgcctcgacggggaagctgacggagaaatcagacgtgttcttcttcggggtggtg 811 ||||||||||| || || ||||| || ||||| || ||||| |||| |||||| || || Sbjct: 1437 gagtacgcctc-accggcaagctcaccgagaagtccgacgtcttctccttcggcgtcatg 1495 Query: 812 ctcctggagctcatcaccggccggaagcccgtcgacac 849 || ||||||||| ||||||| ||| |||||||||||| Sbjct: 1496 ctgctggagctcctcaccgggcggcggcccgtcgacac 1533 Score = 42.1 bits (21), Expect = 4.2 Identities = 54/65 (83%) Strand = Plus / Plus Query: 471 gcctacctgcacgaggactgtcatccaaggatcatccacggggacatcaagtcatccaac 530 |||||||| ||||| ||||| || || ||||||||||| | ||||||||| | ||||| Sbjct: 1257 gcctacctccacgaagactgccacccgcggatcatccaccgcgacatcaaggcggccaac 1316 Query: 531 atcct 535 ||||| Sbjct: 1317 atcct 1321
>emb|Y18778.2|HMAY18778 Hordeum marinum BARE-1 long terminal repeat DNA (HMARC) Length = 1888 Score = 52.0 bits (26), Expect = 0.004 Identities = 26/26 (100%) Strand = Plus / Plus Query: 992 tgttggaattatgccctagaggcaat 1017 |||||||||||||||||||||||||| Sbjct: 3 tgttggaattatgccctagaggcaat 28
>emb|Z84543.1|HV21RC H.vulgare BARE-1 long terminal repeat DNA; ID 21RC Length = 102 Score = 52.0 bits (26), Expect = 0.004 Identities = 29/30 (96%) Strand = Plus / Plus Query: 1059 cgttcattatccatgctataattgtattga 1088 |||| ||||||||||||||||||||||||| Sbjct: 24 cgtttattatccatgctataattgtattga 53
>emb|CT831727.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN032C03, full insert sequence Length = 1819 Score = 48.1 bits (24), Expect = 0.068 Identities = 30/32 (93%) Strand = Plus / Plus Query: 501 atcatccacggggacatcaagtcatccaacat 532 ||||||||| | |||||||||||||||||||| Sbjct: 922 atcatccaccgtgacatcaagtcatccaacat 953
>dbj|AK240986.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J065050M10, full insert sequence Length = 2128 Score = 48.1 bits (24), Expect = 0.068 Identities = 30/32 (93%) Strand = Plus / Plus Query: 501 atcatccacggggacatcaagtcatccaacat 532 ||||||||| | |||||||||||||||||||| Sbjct: 1357 atcatccaccgtgacatcaagtcatccaacat 1388
>ref|NM_001075026.1| Oryza sativa (japonica cultivar-group) Os11g0691600 (Os11g0691600) mRNA, complete cds Length = 2133 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Plus Query: 802 cggggtggtgctcctggagctcatcacc 829 |||||| ||||||||||||||||||||| Sbjct: 1833 cggggtcgtgctcctggagctcatcacc 1860
>ref|NM_001074947.1| Oryza sativa (japonica cultivar-group) Os11g0664100 (Os11g0664100) mRNA, complete cds Length = 1509 Score = 48.1 bits (24), Expect = 0.068 Identities = 33/36 (91%) Strand = Plus / Plus Query: 504 atccacggggacatcaagtcatccaacatccttctc 539 |||||| | ||||||||| ||||||||||||||||| Sbjct: 892 atccaccgcgacatcaagacatccaacatccttctc 927
>ref|NM_001074093.1| Oryza sativa (japonica cultivar-group) Os11g0232100 (Os11g0232100) mRNA, complete cds Length = 3492 Score = 48.1 bits (24), Expect = 0.068 Identities = 57/68 (83%) Strand = Plus / Plus Query: 769 gaagctgacggagaaatcagacgtgttcttcttcggggtggtgctcctggagctcatcac 828 |||| |||||||||| | ||||||| | |||||| || ||||| ||||||||| |||| Sbjct: 2926 gaaggtgacggagaagacggacgtgtacagcttcggcgtcgtgctgctggagctcgtcac 2985 Query: 829 cggccgga 836 |||||||| Sbjct: 2986 cggccgga 2993 Score = 44.1 bits (22), Expect = 1.1 Identities = 40/46 (86%) Strand = Plus / Plus Query: 500 gatcatccacggggacatcaagtcatccaacatccttctcaacgac 545 |||||||||| | ||||||||||| |||||||||| ||| ||||| Sbjct: 2761 gatcatccaccgcgacatcaagtccaccaacatcctcctcgacgac 2806
>ref|NM_001069976.1| Oryza sativa (japonica cultivar-group) Os09g0471400 (Os09g0471400) mRNA, partial cds Length = 1502 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Plus Query: 505 tccacggggacatcaagtcatccaacat 532 ||||||||||| |||||||||||||||| Sbjct: 726 tccacggggacgtcaagtcatccaacat 753
>ref|NM_001063365.1| Oryza sativa (japonica cultivar-group) Os06g0151800 (Os06g0151800) mRNA, complete cds Length = 1948 Score = 48.1 bits (24), Expect = 0.068 Identities = 33/36 (91%) Strand = Plus / Minus Query: 500 gatcatccacggggacatcaagtcatccaacatcct 535 |||||||||||||||||||||| ||||||||||| Sbjct: 553 gatcatccacggggacatcaagctgtccaacatcct 518
>ref|NM_001063364.1| Oryza sativa (japonica cultivar-group) Os06g0151700 (Os06g0151700) mRNA, complete cds Length = 1867 Score = 48.1 bits (24), Expect = 0.068 Identities = 33/36 (91%) Strand = Plus / Plus Query: 500 gatcatccacggggacatcaagtcatccaacatcct 535 |||||||||||||||||||||| ||||||||||| Sbjct: 1117 gatcatccacggggacatcaagctgtccaacatcct 1152
>ref|NM_001051360.1| Oryza sativa (japonica cultivar-group) Os01g0852100 (Os01g0852100) mRNA, complete cds Length = 1002 Score = 48.1 bits (24), Expect = 0.068 Identities = 30/32 (93%) Strand = Plus / Plus Query: 501 atcatccacggggacatcaagtcatccaacat 532 ||||||||| | |||||||||||||||||||| Sbjct: 418 atcatccaccgtgacatcaagtcatccaacat 449
>ref|NM_001051359.1| Oryza sativa (japonica cultivar-group) Os01g0852000 (Os01g0852000) mRNA, complete cds Length = 840 Score = 48.1 bits (24), Expect = 0.068 Identities = 30/32 (93%) Strand = Plus / Minus Query: 501 atcatccacggggacatcaagtcatccaacat 532 ||||||||| | |||||||||||||||||||| Sbjct: 766 atcatccaccgtgacatcaagtcatccaacat 735
>gb|DQ234070.1| Secale cereale clone 1 RAPD marker G15 genomic sequence Length = 983 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Minus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 906 ggaaatatgccctagaggcaataataaa 879
>gb|AY663392.1| Triticum aestivum cultivar Renan clone BAC 930H14, complete sequence Length = 153766 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Plus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 13167 ggaaatatgccctagaggcaataataaa 13194 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Plus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 40481 ggaaatatgccctagaggcaataataaa 40508 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Plus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 46687 ggaaatatgccctagaggcaataataaa 46714 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Plus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 53667 ggaaatatgccctagaggcaataataaa 53694 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Plus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 56270 ggaaatatgccctagaggcaataataaa 56297 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Plus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 63489 ggaaatatgccctagaggcaataataaa 63516
>gb|AC136971.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0032K12, complete sequence Length = 166936 Score = 48.1 bits (24), Expect = 0.068 Identities = 57/68 (83%) Strand = Plus / Minus Query: 769 gaagctgacggagaaatcagacgtgttcttcttcggggtggtgctcctggagctcatcac 828 |||| |||||||||| | ||||||| | |||||| || ||||| ||||||||| |||| Sbjct: 59652 gaaggtgacggagaagacggacgtgtacagcttcggcgtcgtgctgctggagctcgtcac 59593 Query: 829 cggccgga 836 |||||||| Sbjct: 59592 cggccgga 59585 Score = 44.1 bits (22), Expect = 1.1 Identities = 40/46 (86%) Strand = Plus / Minus Query: 500 gatcatccacggggacatcaagtcatccaacatccttctcaacgac 545 |||||||||| | ||||||||||| |||||||||| ||| ||||| Sbjct: 59906 gatcatccaccgcgacatcaagtccaccaacatcctcctcgacgac 59861
>gb|AC146937.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0004O15 map near R3342S, complete sequence Length = 140142 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Minus Query: 802 cggggtggtgctcctggagctcatcacc 829 |||||| ||||||||||||||||||||| Sbjct: 123089 cggggtcgtgctcctggagctcatcacc 123062
>gb|AC148822.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0036K13 map near R3342S, complete sequence Length = 135684 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Plus Query: 802 cggggtggtgctcctggagctcatcacc 829 |||||| ||||||||||||||||||||| Sbjct: 135011 cggggtcgtgctcctggagctcatcacc 135038
>gb|AY585353.1|AY585353S1 Aegilops tauschii low molecular weight glutenin subunit LMW.S4 pseudogene, complete sequence; and insertion sequence unknown, partial sequence Length = 1189 Score = 48.1 bits (24), Expect = 0.068 Identities = 24/24 (100%) Strand = Plus / Plus Query: 1001 tatgccctagaggcaataataaat 1024 |||||||||||||||||||||||| Sbjct: 760 tatgccctagaggcaataataaat 783
>gb|AY491681.1| Triticum monococcum DV92 BAC 109N23, complete sequence Length = 101101 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Plus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 33783 ggaaatatgccctagaggcaataataaa 33810 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Minus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 43152 ggaaatatgccctagaggcaataataaa 43125 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Minus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 50140 ggaaatatgccctagaggcaataataaa 50113 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Minus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 54216 ggaaatatgccctagaggcaataataaa 54189 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Minus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 85021 ggaaatatgccctagaggcaataataaa 84994 Score = 46.1 bits (23), Expect = 0.27 Identities = 23/23 (100%) Strand = Plus / Minus Query: 1001 tatgccctagaggcaataataaa 1023 ||||||||||||||||||||||| Sbjct: 60915 tatgccctagaggcaataataaa 60893
>gb|DQ175821.1| Hordeum vulgare clone DsB11 Ds insertion site flanking region genomic sequence Length = 950 Score = 48.1 bits (24), Expect = 0.068 Identities = 33/36 (91%) Strand = Plus / Plus Query: 1053 gataatcgttcattatccatgctataattgtattga 1088 |||||||| | ||||||||||||| ||||||||||| Sbjct: 591 gataatcggttattatccatgctagaattgtattga 626
>gb|DQ175813.1| Hordeum vulgare clone DsB3 Ds insertion site flanking region genomic sequence Length = 400 Score = 48.1 bits (24), Expect = 0.068 Identities = 33/36 (91%) Strand = Plus / Plus Query: 1053 gataatcgttcattatccatgctataattgtattga 1088 |||||||| | ||||||||||||| ||||||||||| Sbjct: 361 gataatcggttattatccatgctagaattgtattga 396
>gb|AC129227.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBb0099J16, complete sequence Length = 133198 Score = 48.1 bits (24), Expect = 0.068 Identities = 33/36 (91%) Strand = Plus / Minus Query: 504 atccacggggacatcaagtcatccaacatccttctc 539 |||||| | ||||||||| ||||||||||||||||| Sbjct: 121463 atccaccgcgacatcaagacatccaacatccttctc 121428
>gb|AY013753.1| Aegilops tauschii glutathione-S-transferase 2 and glutathione S-transferase 1 genes, complete cds Length = 13710 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Minus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 1034 ggaaatatgccctagaggcaataataaa 1007 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Plus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 5264 ggaaatatgccctagaggcaataataaa 5291
>emb|CR626929.1| Triticum aestivum Length = 20745 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Minus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 8942 ggaaatatgccctagaggcaataataaa 8915
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9 Length = 22696651 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Minus Query: 505 tccacggggacatcaagtcatccaacat 532 ||||||||||| |||||||||||||||| Sbjct: 17907409 tccacggggacgtcaagtcatccaacat 17907382 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1016 ataataaatatagttattatta 1037 |||||||||||||||||||||| Sbjct: 6923566 ataataaatatagttattatta 6923545
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 48.1 bits (24), Expect = 0.068 Identities = 30/32 (93%) Strand = Plus / Minus Query: 501 atcatccacggggacatcaagtcatccaacat 532 ||||||||| | |||||||||||||||||||| Sbjct: 36677951 atcatccaccgtgacatcaagtcatccaacat 36677920 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Minus Query: 335 tggagaggaggaagaagaagaa 356 |||||||||||||||||||||| Sbjct: 31900604 tggagaggaggaagaagaagaa 31900583 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Minus Query: 335 tggagaggaggaagaagaagaa 356 |||||||||||||||||||||| Sbjct: 31904947 tggagaggaggaagaagaagaa 31904926 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Minus Query: 336 ggagaggaggaagaagaagaac 357 |||||||||||||||||||||| Sbjct: 39941352 ggagaggaggaagaagaagaac 39941331 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Minus Query: 336 ggagaggaggaagaagaagaac 357 |||||||||||||||||||||| Sbjct: 41088409 ggagaggaggaagaagaagaac 41088388 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 338 agaggaggaagaagaagaacc 358 ||||||||||||||||||||| Sbjct: 39980370 agaggaggaagaagaagaacc 39980350
>gb|AF234649.1|AF234649 Triticum aestivum clone G2656 gamma-gliadin gene, complete cds Length = 6443 Score = 48.1 bits (24), Expect = 0.068 Identities = 24/24 (100%) Strand = Plus / Plus Query: 1001 tatgccctagaggcaataataaat 1024 |||||||||||||||||||||||| Sbjct: 5329 tatgccctagaggcaataataaat 5352
>dbj|AP004072.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0529H11 Length = 165969 Score = 48.1 bits (24), Expect = 0.068 Identities = 30/32 (93%) Strand = Plus / Minus Query: 501 atcatccacggggacatcaagtcatccaacat 532 ||||||||| | |||||||||||||||||||| Sbjct: 151217 atcatccaccgtgacatcaagtcatccaacat 151186
>dbj|AP003279.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0529E05 Length = 134982 Score = 48.1 bits (24), Expect = 0.068 Identities = 30/32 (93%) Strand = Plus / Minus Query: 501 atcatccacggggacatcaagtcatccaacat 532 ||||||||| | |||||||||||||||||||| Sbjct: 4266 atcatccaccgtgacatcaagtcatccaacat 4235
>dbj|AP004806.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0710H01 Length = 187107 Score = 48.1 bits (24), Expect = 0.068 Identities = 33/36 (91%) Strand = Plus / Minus Query: 500 gatcatccacggggacatcaagtcatccaacatcct 535 |||||||||||||||||||||| ||||||||||| Sbjct: 116402 gatcatccacggggacatcaagctgtccaacatcct 116367
>dbj|AP006554.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0529C07 Length = 174011 Score = 48.1 bits (24), Expect = 0.068 Identities = 33/36 (91%) Strand = Plus / Minus Query: 500 gatcatccacggggacatcaagtcatccaacatcct 535 |||||||||||||||||||||| ||||||||||| Sbjct: 72808 gatcatccacggggacatcaagctgtccaacatcct 72773
>dbj|AP005555.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1118_B06 Length = 106678 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Minus Query: 505 tccacggggacatcaagtcatccaacat 532 ||||||||||| |||||||||||||||| Sbjct: 58228 tccacggggacgtcaagtcatccaacat 58201
>dbj|AK111558.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013054D24, full insert sequence Length = 3492 Score = 48.1 bits (24), Expect = 0.068 Identities = 57/68 (83%) Strand = Plus / Plus Query: 769 gaagctgacggagaaatcagacgtgttcttcttcggggtggtgctcctggagctcatcac 828 |||| |||||||||| | ||||||| | |||||| || ||||| ||||||||| |||| Sbjct: 2926 gaaggtgacggagaagacggacgtgtacagcttcggcgtcgtgctgctggagctcgtcac 2985 Query: 829 cggccgga 836 |||||||| Sbjct: 2986 cggccgga 2993 Score = 44.1 bits (22), Expect = 1.1 Identities = 40/46 (86%) Strand = Plus / Plus Query: 500 gatcatccacggggacatcaagtcatccaacatccttctcaacgac 545 |||||||||| | ||||||||||| |||||||||| ||| ||||| Sbjct: 2761 gatcatccaccgcgacatcaagtccaccaacatcctcctcgacgac 2806
>dbj|AK109679.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-145-C06, full insert sequence Length = 1950 Score = 48.1 bits (24), Expect = 0.068 Identities = 33/36 (91%) Strand = Plus / Minus Query: 500 gatcatccacggggacatcaagtcatccaacatcct 535 |||||||||||||||||||||| ||||||||||| Sbjct: 553 gatcatccacggggacatcaagctgtccaacatcct 518
>dbj|AK106925.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-119-B09, full insert sequence Length = 1867 Score = 48.1 bits (24), Expect = 0.068 Identities = 33/36 (91%) Strand = Plus / Plus Query: 500 gatcatccacggggacatcaagtcatccaacatcct 535 |||||||||||||||||||||| ||||||||||| Sbjct: 1117 gatcatccacggggacatcaagctgtccaacatcct 1152
>dbj|AK105669.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-A03, full insert sequence Length = 2627 Score = 48.1 bits (24), Expect = 0.068 Identities = 57/68 (83%) Strand = Plus / Plus Query: 769 gaagctgacggagaaatcagacgtgttcttcttcggggtggtgctcctggagctcatcac 828 |||| |||||||||| | ||||||| | |||||| || ||||| ||||||||| |||| Sbjct: 1980 gaaggtgacggagaagacggacgtgtacagcttcggcgtcgtgctgctggagctcgtcac 2039 Query: 829 cggccgga 836 |||||||| Sbjct: 2040 cggccgga 2047 Score = 44.1 bits (22), Expect = 1.1 Identities = 40/46 (86%) Strand = Plus / Plus Query: 500 gatcatccacggggacatcaagtcatccaacatccttctcaacgac 545 |||||||||| | ||||||||||| |||||||||| ||| ||||| Sbjct: 1815 gatcatccaccgcgacatcaagtccaccaacatcctcctcgacgac 1860
>dbj|AK064631.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-113-G07, full insert sequence Length = 840 Score = 48.1 bits (24), Expect = 0.068 Identities = 30/32 (93%) Strand = Plus / Minus Query: 501 atcatccacggggacatcaagtcatccaacat 532 ||||||||| | |||||||||||||||||||| Sbjct: 766 atcatccaccgtgacatcaagtcatccaacat 735
>dbj|AK060211.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-002-B07, full insert sequence Length = 1502 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Plus Query: 505 tccacggggacatcaagtcatccaacat 532 ||||||||||| |||||||||||||||| Sbjct: 726 tccacggggacgtcaagtcatccaacat 753
>gb|AY954977.1| Triticum aestivum cultivar 99L2 RAPD marker OPO10c genomic sequence Length = 642 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Minus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 424 ggaaatatgccctagaggcaataataaa 397
>emb|Z84562.1|HVE1326PR H.vulgare BARE-1 long terminal repeat DNA; ID E1326PR Length = 558 Score = 48.1 bits (24), Expect = 0.068 Identities = 33/36 (91%) Strand = Plus / Plus Query: 1053 gataatcgttcattatccatgctataattgtattga 1088 |||||| ||| ||| ||||||||||||||||||||| Sbjct: 474 gataattgtttattttccatgctataattgtattga 509
>dbj|AB077369.1| Aegilops speltoides DNA, repeat sequence, clone:pAspCopi-1 Length = 423 Score = 48.1 bits (24), Expect = 0.068 Identities = 27/28 (96%) Strand = Plus / Plus Query: 996 ggaattatgccctagaggcaataataaa 1023 |||| ||||||||||||||||||||||| Sbjct: 7 ggaaatatgccctagaggcaataataaa 34
>emb|CT835920.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA021I03, full insert sequence Length = 1004 Score = 46.1 bits (23), Expect = 0.27 Identities = 29/31 (93%) Strand = Plus / Minus Query: 336 ggagaggaggaagaagaagaaccagcgggcg 366 ||||||||||||||||||||| |||| |||| Sbjct: 774 ggagaggaggaagaagaagaagcagctggcg 744
>emb|CR855148.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0525C06, complete sequence Length = 99490 Score = 46.1 bits (23), Expect = 0.27 Identities = 32/35 (91%) Strand = Plus / Minus Query: 501 atcatccacggggacatcaagtcatccaacatcct 535 ||||||||| | ||||||||||| ||||||||||| Sbjct: 66130 atcatccaccgcgacatcaagtcctccaacatcct 66096
>ref|NM_001062008.1| Oryza sativa (japonica cultivar-group) Os05g0398800 (Os05g0398800) mRNA, complete cds Length = 2004 Score = 46.1 bits (23), Expect = 0.27 Identities = 26/27 (96%) Strand = Plus / Plus Query: 752 gagtacgcctcgacggggaagctgacg 778 |||||||| |||||||||||||||||| Sbjct: 1123 gagtacgcgtcgacggggaagctgacg 1149
>ref|NM_001059978.1| Oryza sativa (japonica cultivar-group) Os04g0540900 (Os04g0540900) mRNA, complete cds Length = 1491 Score = 46.1 bits (23), Expect = 0.27 Identities = 41/47 (87%) Strand = Plus / Plus Query: 502 tcatccacggggacatcaagtcatccaacatccttctcaacgacaac 548 |||||||||||||||||||| | |||||| |||| ||| ||| |||| Sbjct: 717 tcatccacggggacatcaaggcgtccaacgtcctcctcgacgccaac 763
>ref|NM_001059405.1| Oryza sativa (japonica cultivar-group) Os04g0439600 (Os04g0439600) mRNA, complete cds Length = 2844 Score = 46.1 bits (23), Expect = 0.27 Identities = 32/35 (91%) Strand = Plus / Plus Query: 501 atcatccacggggacatcaagtcatccaacatcct 535 ||||||||| | ||||||||||| ||||||||||| Sbjct: 1956 atcatccaccgcgacatcaagtcctccaacatcct 1990
>ref|NM_001050790.1| Oryza sativa (japonica cultivar-group) Os01g0750600 (Os01g0750600) mRNA, complete cds Length = 2370 Score = 46.1 bits (23), Expect = 0.27 Identities = 50/59 (84%) Strand = Plus / Plus Query: 477 ctgcacgaggactgtcatccaaggatcatccacggggacatcaagtcatccaacatcct 535 |||||||||||||||||||| | ||| || || | ||||||||| || |||||||||| Sbjct: 1264 ctgcacgaggactgtcatcctaagattattcatagagacatcaaggcagccaacatcct 1322
>gb|DQ666286.1| Triticum monococcum subsp. aegilopoides transposon Ty1/copia Angela_BAC5, complete sequence Length = 8558 Score = 46.1 bits (23), Expect = 0.27 Identities = 23/23 (100%) Strand = Plus / Plus Query: 1001 tatgccctagaggcaataataaa 1023 ||||||||||||||||||||||| Sbjct: 6829 tatgccctagaggcaataataaa 6851
>gb|AC116367.10| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0059H21 map R3342S, complete sequence Length = 133790 Score = 46.1 bits (23), Expect = 0.27 Identities = 26/27 (96%) Strand = Plus / Minus Query: 803 ggggtggtgctcctggagctcatcacc 829 ||||| ||||||||||||||||||||| Sbjct: 99892 ggggtcgtgctcctggagctcatcacc 99866
>ref|XM_587386.2| PREDICTED: Bos taurus similar to calcium/calmodulin-dependent protein kinase 1 alpha isoform a (LOC510260), mRNA Length = 1903 Score = 46.1 bits (23), Expect = 0.27 Identities = 29/31 (93%) Strand = Plus / Plus Query: 500 gatcatccacggggacatcaagtcatccaac 530 |||||||||| ||||||||||| |||||||| Sbjct: 810 gatcatccacagggacatcaagccatccaac 840
>gb|AC130603.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1130G10, complete sequence Length = 143073 Score = 46.1 bits (23), Expect = 0.27 Identities = 26/27 (96%) Strand = Plus / Plus Query: 465 gggttggcctacctgcacgaggactgt 491 |||||||||||||||||||| |||||| Sbjct: 55919 gggttggcctacctgcacgaagactgt 55945
>gb|AF519546.1| Danio rerio coagulation factor VII, coagulation factor VIIi, and coagulation factor X genes, complete cds Length = 20947 Score = 46.1 bits (23), Expect = 0.27 Identities = 23/23 (100%) Strand = Plus / Plus Query: 1018 aataaatatagttattattataa 1040 ||||||||||||||||||||||| Sbjct: 1824 aataaatatagttattattataa 1846
>gb|AF483204.1| Dysmicoccus brevipes cytochrome c oxidase subunit I (COI) gene, partial cds; tRNA-Leu gene, complete sequence; and cytochrome c oxidase subunit II (COII) gene, partial cds; mitochondrial genes for mitochondrial products Length = 1452 Score = 46.1 bits (23), Expect = 0.27 Identities = 26/27 (96%) Strand = Plus / Minus Query: 1015 aataataaatatagttattattataat 1041 ||||||||||||| ||||||||||||| Sbjct: 1000 aataataaatataattattattataat 974
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8 Length = 28434780 Score = 46.1 bits (23), Expect = 0.27 Identities = 29/31 (93%) Strand = Plus / Minus Query: 336 ggagaggaggaagaagaagaaccagcgggcg 366 ||||||||||||||||||||| |||| |||| Sbjct: 132833 ggagaggaggaagaagaagaagcagctggcg 132803 Score = 42.1 bits (21), Expect = 4.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 517 tcaagtcatccaacatccttctcaacgac 545 ||||||| ||||||||||| ||||||||| Sbjct: 25924460 tcaagtcgtccaacatcctcctcaacgac 25924432
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 46.1 bits (23), Expect = 0.27 Identities = 32/35 (91%) Strand = Plus / Minus Query: 501 atcatccacggggacatcaagtcatccaacatcct 535 ||||||||| | ||||||||||| ||||||||||| Sbjct: 21888170 atcatccaccgcgacatcaagtcctccaacatcct 21888136 Score = 46.1 bits (23), Expect = 0.27 Identities = 41/47 (87%) Strand = Plus / Minus Query: 502 tcatccacggggacatcaagtcatccaacatccttctcaacgacaac 548 |||||||||||||||||||| | |||||| |||| ||| ||| |||| Sbjct: 27032582 tcatccacggggacatcaaggcgtccaacgtcctcctcgacgccaac 27032536 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 336 ggagaggaggaagaagaagaa 356 ||||||||||||||||||||| Sbjct: 32052089 ggagaggaggaagaagaagaa 32052069
>emb|AL606587.3|OSJN00022 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0011L07, complete sequence Length = 143585 Score = 46.1 bits (23), Expect = 0.27 Identities = 41/47 (87%) Strand = Plus / Minus Query: 502 tcatccacggggacatcaagtcatccaacatccttctcaacgacaac 548 |||||||||||||||||||| | |||||| |||| ||| ||| |||| Sbjct: 100283 tcatccacggggacatcaaggcgtccaacgtcctcctcgacgccaac 100237
>dbj|AP004654.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0015C07 Length = 149079 Score = 46.1 bits (23), Expect = 0.27 Identities = 29/31 (93%) Strand = Plus / Minus Query: 336 ggagaggaggaagaagaagaaccagcgggcg 366 ||||||||||||||||||||| |||| |||| Sbjct: 48168 ggagaggaggaagaagaagaagcagctggcg 48138
>dbj|AK109788.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-147-D03, full insert sequence Length = 2846 Score = 46.1 bits (23), Expect = 0.27 Identities = 32/35 (91%) Strand = Plus / Plus Query: 501 atcatccacggggacatcaagtcatccaacatcct 535 ||||||||| | ||||||||||| ||||||||||| Sbjct: 1958 atcatccaccgcgacatcaagtcctccaacatcct 1992
>dbj|AK106842.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-116-H07, full insert sequence Length = 2004 Score = 46.1 bits (23), Expect = 0.27 Identities = 26/27 (96%) Strand = Plus / Plus Query: 752 gagtacgcctcgacggggaagctgacg 778 |||||||| |||||||||||||||||| Sbjct: 1123 gagtacgcgtcgacggggaagctgacg 1149
>dbj|AK102832.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033109I17, full insert sequence Length = 2371 Score = 46.1 bits (23), Expect = 0.27 Identities = 50/59 (84%) Strand = Plus / Plus Query: 477 ctgcacgaggactgtcatccaaggatcatccacggggacatcaagtcatccaacatcct 535 |||||||||||||||||||| | ||| || || | ||||||||| || |||||||||| Sbjct: 1265 ctgcacgaggactgtcatcctaagattattcatagagacatcaaggcagccaacatcct 1323
>emb|AL606452.2|OSJN00007 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ000114_01, complete sequence Length = 127713 Score = 46.1 bits (23), Expect = 0.27 Identities = 32/35 (91%) Strand = Plus / Minus Query: 501 atcatccacggggacatcaagtcatccaacatcct 535 ||||||||| | ||||||||||| ||||||||||| Sbjct: 72771 atcatccaccgcgacatcaagtcctccaacatcct 72737
>dbj|AK066397.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013061M19, full insert sequence Length = 1494 Score = 46.1 bits (23), Expect = 0.27 Identities = 41/47 (87%) Strand = Plus / Plus Query: 502 tcatccacggggacatcaagtcatccaacatccttctcaacgacaac 548 |||||||||||||||||||| | |||||| |||| ||| ||| |||| Sbjct: 718 tcatccacggggacatcaaggcgtccaacgtcctcctcgacgccaac 764
>dbj|AK064397.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-108-G09, full insert sequence Length = 2364 Score = 46.1 bits (23), Expect = 0.27 Identities = 50/59 (84%) Strand = Plus / Plus Query: 477 ctgcacgaggactgtcatccaaggatcatccacggggacatcaagtcatccaacatcct 535 |||||||||||||||||||| | ||| || || | ||||||||| || |||||||||| Sbjct: 1249 ctgcacgaggactgtcatcctaagattattcatagagacatcaaggcagccaacatcct 1307
>emb|CT832262.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA050B11, full insert sequence Length = 866 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Minus Query: 336 ggagaggaggaagaagaagaac 357 |||||||||||||||||||||| Sbjct: 31 ggagaggaggaagaagaagaac 10
>ref|XM_001223266.1| Chaetomium globosum CBS 148.51 hypothetical protein (CHGG_04053) mRNA, complete cds Length = 2928 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Minus Query: 402 gggaggggaaggccggtgatgg 423 |||||||||||||||||||||| Sbjct: 202 gggaggggaaggccggtgatgg 181
>ref|NM_001064198.1| Oryza sativa (japonica cultivar-group) Os06g0486000 (Os06g0486000) mRNA, complete cds Length = 2671 Score = 44.1 bits (22), Expect = 1.1 Identities = 25/26 (96%) Strand = Plus / Plus Query: 815 ctggagctcatcaccggccggaagcc 840 |||||||||||||||||||| ||||| Sbjct: 1954 ctggagctcatcaccggccgcaagcc 1979 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 417 gtgatggactggccgacgagg 437 ||||||||||||||||||||| Sbjct: 1657 gtgatggactggccgacgagg 1677
>ref|NM_001055988.1| Oryza sativa (japonica cultivar-group) Os03g0228800 (Os03g0228800) mRNA, complete cds Length = 3314 Score = 44.1 bits (22), Expect = 1.1 Identities = 37/42 (88%) Strand = Plus / Plus Query: 799 cttcggggtggtgctcctggagctcatcaccggccggaagcc 840 ||||||||| ||||| |||||||||||| | || |||||||| Sbjct: 2665 cttcggggtagtgctactggagctcatcgctgggcggaagcc 2706
>ref|NM_001051861.1| Oryza sativa (japonica cultivar-group) Os01g0936100 (Os01g0936100) mRNA, complete cds Length = 2568 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Minus Query: 336 ggagaggaggaagaagaagaac 357 |||||||||||||||||||||| Sbjct: 140 ggagaggaggaagaagaagaac 119
>gb|AE014298.4| Drosophila melanogaster chromosome X, complete sequence Length = 22422827 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Minus Query: 921 aggagttcgaggagctggtgga 942 |||||||||||||||||||||| Sbjct: 14042954 aggagttcgaggagctggtgga 14042933
>dbj|AB247921.1| Triticum aestivum TaANS-D1 gene for anthocyanidin synthase, complete cds Length = 3161 Score = 44.1 bits (22), Expect = 1.1 Identities = 25/26 (96%) Strand = Plus / Minus Query: 996 ggaattatgccctagaggcaataata 1021 |||| ||||||||||||||||||||| Sbjct: 94 ggaaatatgccctagaggcaataata 69
>gb|AC186751.1| Musa acuminata clone MA4_54N07, complete sequence Length = 96443 Score = 44.1 bits (22), Expect = 1.1 Identities = 52/62 (83%) Strand = Plus / Plus Query: 770 aagctgacggagaaatcagacgtgttcttcttcggggtggtgctcctggagctcatcacc 829 |||||||| |||| ||| |||||||| | ||| || || ||||| ||||| ||||||||| Sbjct: 68158 aagctgaccgagagatctgacgtgttttcctttggagtcgtgcttctggaactcatcacc 68217 Query: 830 gg 831 || Sbjct: 68218 gg 68219
>gb|AC011697.9| Drosophila melanogaster clone BACR12J05, complete sequence Length = 203498 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Minus Query: 921 aggagttcgaggagctggtgga 942 |||||||||||||||||||||| Sbjct: 32671 aggagttcgaggagctggtgga 32650
>gb|AE014832.1| Plasmodium falciparum 3D7 chromosome 10 section 4 of 7 of the complete sequence Length = 258658 Score = 44.1 bits (22), Expect = 1.1 Identities = 25/26 (96%) Strand = Plus / Plus Query: 1016 ataataaatatagttattattataat 1041 |||||||||||| ||||||||||||| Sbjct: 126032 ataataaatataattattattataat 126057
>gb|BT017642.1| Zea mays clone EL01N0438G12.c mRNA sequence Length = 1126 Score = 44.1 bits (22), Expect = 1.1 Identities = 34/38 (89%) Strand = Plus / Plus Query: 502 tcatccacggggacatcaagtcatccaacatccttctc 539 |||| |||||| ||||||||||| ||||||||||||| Sbjct: 459 tcattcacgggaacatcaagtcaagcaacatccttctc 496
>gb|AC099732.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1203D03, complete sequence Length = 82352 Score = 44.1 bits (22), Expect = 1.1 Identities = 37/42 (88%) Strand = Plus / Plus Query: 799 cttcggggtggtgctcctggagctcatcaccggccggaagcc 840 ||||||||| ||||| |||||||||||| | || |||||||| Sbjct: 51196 cttcggggtagtgctactggagctcatcgctgggcggaagcc 51237
>gb|AC021639.5| Drosophila melanogaster, chromosome X, region 12E-12E, BAC clone BACR02C24, complete sequence Length = 234783 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Plus Query: 921 aggagttcgaggagctggtgga 942 |||||||||||||||||||||| Sbjct: 47710 aggagttcgaggagctggtgga 47731
>dbj|AP003451.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0413C03 Length = 162161 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Minus Query: 336 ggagaggaggaagaagaagaac 357 |||||||||||||||||||||| Sbjct: 32803 ggagaggaggaagaagaagaac 32782 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 338 agaggaggaagaagaagaacc 358 ||||||||||||||||||||| Sbjct: 71821 agaggaggaagaagaagaacc 71801
>dbj|AP003409.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1131G08 Length = 158241 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Minus Query: 335 tggagaggaggaagaagaagaa 356 |||||||||||||||||||||| Sbjct: 86682 tggagaggaggaagaagaagaa 86661 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Minus Query: 335 tggagaggaggaagaagaagaa 356 |||||||||||||||||||||| Sbjct: 91025 tggagaggaggaagaagaagaa 91004
>dbj|AP003266.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0492G09 Length = 142239 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Minus Query: 336 ggagaggaggaagaagaagaac 357 |||||||||||||||||||||| Sbjct: 125339 ggagaggaggaagaagaagaac 125318
>gb|AC153954.3| Mus musculus 10 BAC RP24-236E2 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 151818 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Minus Query: 335 tggagaggaggaagaagaagaa 356 |||||||||||||||||||||| Sbjct: 26994 tggagaggaggaagaagaagaa 26973
>dbj|AP003433.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0004D12 Length = 138136 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Minus Query: 336 ggagaggaggaagaagaagaac 357 |||||||||||||||||||||| Sbjct: 122060 ggagaggaggaagaagaagaac 122039
>dbj|AP004012.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OJ1568_D07 Length = 83857 Score = 44.1 bits (22), Expect = 1.1 Identities = 25/26 (96%) Strand = Plus / Minus Query: 815 ctggagctcatcaccggccggaagcc 840 |||||||||||||||||||| ||||| Sbjct: 57287 ctggagctcatcaccggccgcaagcc 57262 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 417 gtgatggactggccgacgagg 437 ||||||||||||||||||||| Sbjct: 57786 gtgatggactggccgacgagg 57766
>dbj|AP003518.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0008F02 Length = 139655 Score = 44.1 bits (22), Expect = 1.1 Identities = 25/26 (96%) Strand = Plus / Minus Query: 815 ctggagctcatcaccggccggaagcc 840 |||||||||||||||||||| ||||| Sbjct: 38749 ctggagctcatcaccggccgcaagcc 38724 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 417 gtgatggactggccgacgagg 437 ||||||||||||||||||||| Sbjct: 39248 gtgatggactggccgacgagg 39228
>dbj|AP006156.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:B1043F11 Length = 167137 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1016 ataataaatatagttattatta 1037 |||||||||||||||||||||| Sbjct: 151461 ataataaatatagttattatta 151440
>dbj|AK121286.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023108P09, full insert sequence Length = 3313 Score = 44.1 bits (22), Expect = 1.1 Identities = 37/42 (88%) Strand = Plus / Plus Query: 799 cttcggggtggtgctcctggagctcatcaccggccggaagcc 840 ||||||||| ||||| |||||||||||| | || |||||||| Sbjct: 2665 cttcggggtagtgctactggagctcatcgctgggcggaagcc 2706
>dbj|AK101371.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033035N01, full insert sequence Length = 2568 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Minus Query: 336 ggagaggaggaagaagaagaac 357 |||||||||||||||||||||| Sbjct: 141 ggagaggaggaagaagaagaac 120
>dbj|AK100169.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023023P10, full insert sequence Length = 2671 Score = 44.1 bits (22), Expect = 1.1 Identities = 25/26 (96%) Strand = Plus / Plus Query: 815 ctggagctcatcaccggccggaagcc 840 |||||||||||||||||||| ||||| Sbjct: 1954 ctggagctcatcaccggccgcaagcc 1979 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 417 gtgatggactggccgacgagg 437 ||||||||||||||||||||| Sbjct: 1657 gtgatggactggccgacgagg 1677
>emb|BX649277.5| Zebrafish DNA sequence from clone DKEYP-67A10 in linkage group 20, complete sequence Length = 125366 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Plus Query: 515 catcaagtcatccaacatcctt 536 |||||||||||||||||||||| Sbjct: 963 catcaagtcatccaacatcctt 984
>gb|AY105112.1| Zea mays PCO103575 mRNA sequence Length = 1152 Score = 44.1 bits (22), Expect = 1.1 Identities = 28/30 (93%) Strand = Plus / Plus Query: 799 cttcggggtggtgctcctggagctcatcac 828 |||||| |||||||| |||||||||||||| Sbjct: 527 cttcggcgtggtgcttctggagctcatcac 556
>emb|BX897719.9| Zebrafish DNA sequence from clone CH211-199I23 in linkage group 13, complete sequence Length = 216407 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Plus Query: 515 catcaagtcatccaacatcctt 536 |||||||||||||||||||||| Sbjct: 123752 catcaagtcatccaacatcctt 123773
>dbj|AP003256.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0460E08 Length = 170021 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Minus Query: 335 tggagaggaggaagaagaagaa 356 |||||||||||||||||||||| Sbjct: 1674 tggagaggaggaagaagaagaa 1653
>gb|DQ999005.1| Oryza sativa (japonica cultivar-group) transposon dTok0-disrupted LRR receptor kinase (FON1/MP2) gene, complete sequence Length = 4855 Score = 42.1 bits (21), Expect = 4.2 Identities = 30/33 (90%) Strand = Plus / Plus Query: 799 cttcggggtggtgctcctggagctcatcaccgg 831 |||||| |||||||| |||||||||||||||| Sbjct: 4537 cttcggtgtggtgctattggagctcatcaccgg 4569
>dbj|AK242883.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J090079D13, full insert sequence Length = 3523 Score = 42.1 bits (21), Expect = 4.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 457 cggcgcgtgggttggcctacctgcacgag 485 ||||||||||| |||||||||| |||||| Sbjct: 2655 cggcgcgtgggctggcctacctccacgag 2683
>dbj|AK241835.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J065213G17, full insert sequence Length = 898 Score = 42.1 bits (21), Expect = 4.2 Identities = 42/49 (85%) Strand = Plus / Minus Query: 500 gatcatccacggggacatcaagtcatccaacatccttctcaacgacaac 548 |||||||||| | ||||||||||| |||||||||| ||| || ||||| Sbjct: 675 gatcatccaccgcgacatcaagtccaccaacatcctcctcgacaacaac 627
>ref|NM_001068808.1| Oryza sativa (japonica cultivar-group) Os08g0521200 (Os08g0521200) mRNA, complete cds Length = 2594 Score = 42.1 bits (21), Expect = 4.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 517 tcaagtcatccaacatccttctcaacgac 545 ||||||| ||||||||||| ||||||||| Sbjct: 1771 tcaagtcgtccaacatcctcctcaacgac 1799
>ref|NM_001065128.1| Oryza sativa (japonica cultivar-group) Os06g0717200 (Os06g0717200) mRNA, complete cds Length = 3168 Score = 42.1 bits (21), Expect = 4.2 Identities = 30/33 (90%) Strand = Plus / Plus Query: 799 cttcggggtggtgctcctggagctcatcaccgg 831 |||||| |||||||| |||||||||||||||| Sbjct: 2680 cttcggtgtggtgctattggagctcatcaccgg 2712
>ref|NM_001062412.1| Oryza sativa (japonica cultivar-group) Os05g0486100 (Os05g0486100) mRNA, complete cds Length = 3177 Score = 42.1 bits (21), Expect = 4.2 Identities = 42/49 (85%) Strand = Plus / Plus Query: 500 gatcatccacggggacatcaagtcatccaacatccttctcaacgacaac 548 |||||||||| | ||||||||||| |||||||||| ||| || ||||| Sbjct: 2366 gatcatccaccgcgacatcaagtccaccaacatcctcctcgacaacaac 2414
>ref|NM_001060910.1| Oryza sativa (japonica cultivar-group) Os05g0100700 (Os05g0100700) mRNA, partial cds Length = 1750 Score = 42.1 bits (21), Expect = 4.2 Identities = 36/41 (87%) Strand = Plus / Plus Query: 492 catccaaggatcatccacggggacatcaagtcatccaacat 532 ||||||||||| |||||| | ||||||||||| || ||||| Sbjct: 156 catccaaggataatccaccgagacatcaagtcctcaaacat 196
>ref|NM_001060502.1| Oryza sativa (japonica cultivar-group) Os04g0629400 (Os04g0629400) mRNA, partial cds Length = 728 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 336 ggagaggaggaagaagaagaa 356 ||||||||||||||||||||| Sbjct: 215 ggagaggaggaagaagaagaa 235
>ref|NM_001057418.1| Oryza sativa (japonica cultivar-group) Os03g0674600 (Os03g0674600) mRNA, complete cds Length = 3433 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 336 ggagaggaggaagaagaagaa 356 ||||||||||||||||||||| Sbjct: 3068 ggagaggaggaagaagaagaa 3088
>ref|NM_001057417.1| Oryza sativa (japonica cultivar-group) Os03g0674700 (Os03g0674700) mRNA, complete cds Length = 1615 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 336 ggagaggaggaagaagaagaa 356 ||||||||||||||||||||| Sbjct: 150 ggagaggaggaagaagaagaa 130
>ref|NM_001056540.1| Oryza sativa (japonica cultivar-group) Os03g0329700 (Os03g0329700) mRNA, complete cds Length = 2784 Score = 42.1 bits (21), Expect = 4.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 457 cggcgcgtgggttggcctacctgcacgag 485 ||||||||||| |||||||||| |||||| Sbjct: 2090 cggcgcgtgggctggcctacctccacgag 2118
>ref|NM_001056375.1| Oryza sativa (japonica cultivar-group) Os03g0297800 (Os03g0297800) mRNA, partial cds Length = 1651 Score = 42.1 bits (21), Expect = 4.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 421 tggactggccgacgagggtgaagatcgcg 449 ||||||||||||||||| |||| |||||| Sbjct: 745 tggactggccgacgaggatgaacatcgcg 773
>ref|NM_001056053.1| Oryza sativa (japonica cultivar-group) Os03g0241600 (Os03g0241600) mRNA, partial cds Length = 979 Score = 42.1 bits (21), Expect = 4.2 Identities = 36/41 (87%) Strand = Plus / Plus Query: 504 atccacggggacatcaagtcatccaacatccttctcaacga 544 |||||| |||| ||||||| ||||||||||| |||||||| Sbjct: 96 atccaccgggatgtcaagtcgtccaacatcctcctcaacga 136
>ref|NM_001052186.1| Oryza sativa (japonica cultivar-group) Os02g0110600 (Os02g0110600) mRNA, partial cds Length = 1940 Score = 42.1 bits (21), Expect = 4.2 Identities = 42/49 (85%) Strand = Plus / Plus Query: 499 ggatcatccacggggacatcaagtcatccaacatccttctcaacgacaa 547 ||||| ||||| | ||||||||||| |||||||||| ||| ||||||| Sbjct: 1140 ggatcctccaccgcgacatcaagtccaccaacatcctgctcgacgacaa 1188 Score = 42.1 bits (21), Expect = 4.2 Identities = 36/41 (87%) Strand = Plus / Plus Query: 788 gacgtgttcttcttcggggtggtgctcctggagctcatcac 828 ||||||||| |||||| ||||| |||||||||||||||| Sbjct: 1340 gacgtgttcagcttcggcgtggtcatcctggagctcatcac 1380
>emb|CR847893.16| Zebrafish DNA sequence from clone CH211-242E19, complete sequence Length = 165668 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 690 gaaacgaggaaaaattgtcaa 710 ||||||||||||||||||||| Sbjct: 71413 gaaacgaggaaaaattgtcaa 71433
>emb|BX936448.11| Zebrafish DNA sequence from clone DKEY-11J4 in linkage group 6, complete sequence Length = 229797 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 690 gaaacgaggaaaaattgtcaa 710 ||||||||||||||||||||| Sbjct: 108420 gaaacgaggaaaaattgtcaa 108440
>ref|NW_001091928.1| Theileria annulata strain Ankara clone C9 Length = 1842271 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1014 caataataaatatagttatta 1034 ||||||||||||||||||||| Sbjct: 466969 caataataaatatagttatta 466989
>emb|CT027627.13| Zebrafish DNA sequence from clone CH211-214F1 in linkage group 2, complete sequence Length = 177228 Score = 42.1 bits (21), Expect = 4.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1014 caataataaatatagttattattat 1038 |||||||||| |||||||||||||| Sbjct: 73719 caataataaaaatagttattattat 73743
>emb|CR846078.5| Zebrafish DNA sequence from clone DKEY-145P15 in linkage group 12, complete sequence Length = 102366 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 690 gaaacgaggaaaaattgtcaa 710 ||||||||||||||||||||| Sbjct: 99246 gaaacgaggaaaaattgtcaa 99226
>gb|AC183421.2| Populus trichocarpa clone Pop1-23P7, complete sequence Length = 64513 Score = 42.1 bits (21), Expect = 4.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1018 aataaatatagttattattataatt 1042 |||||| |||||||||||||||||| Sbjct: 25673 aataaaaatagttattattataatt 25697
>gb|AC114650.10| Mus musculus chromosome 3, clone RP24-151O6, complete sequence Length = 185956 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 336 ggagaggaggaagaagaagaa 356 ||||||||||||||||||||| Sbjct: 153012 ggagaggaggaagaagaagaa 152992
>ref|XM_632824.1| Dictyostelium discoideum AX4 hypothetical protein (DDBDRAFT_0186792) mRNA, complete cds Length = 1464 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 338 agaggaggaagaagaagaacc 358 ||||||||||||||||||||| Sbjct: 456 agaggaggaagaagaagaacc 476
>gb|AC079830.9| Oryza sativa chromosome 3 BAC OSJNBb0009F04 genomic sequence, complete sequence Length = 129655 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 336 ggagaggaggaagaagaagaa 356 ||||||||||||||||||||| Sbjct: 36099 ggagaggaggaagaagaagaa 36079
>ref|XM_630301.1| Dictyostelium discoideum AX4 hypothetical protein (DDBDRAFT_0219643) mRNA, complete cds Length = 1329 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 336 ggagaggaggaagaagaagaa 356 ||||||||||||||||||||| Sbjct: 790 ggagaggaggaagaagaagaa 810
>gb|AC161219.4| Mus musculus chromosome 7, clone RP23-83E16, complete sequence Length = 211735 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 336 ggagaggaggaagaagaagaa 356 ||||||||||||||||||||| Sbjct: 25154 ggagaggaggaagaagaagaa 25134
>gb|BC051484.1| Mus musculus SYF2 homolog, RNA splicing factor (S. cerevisiae), mRNA (cDNA clone MGC:62940 IMAGE:1380946), complete cds Length = 1295 Score = 42.1 bits (21), Expect = 4.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 336 ggagaggaggaagaagaagaa 356 ||||||||||||||||||||| Sbjct: 339 ggagaggaggaagaagaagaa 359 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 162,592,674 Number of extensions: 9882497 Number of successful extensions: 353127 Number of sequences better than 10.0: 362 Number of HSP's gapped: 352949 Number of HSP's successfully gapped: 721 Length of query: 1113 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1090 Effective length of database: 18,503,978,556 Effective search space: 20169336626040 Effective search space used: 20169336626040 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
