ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf1f01 |
|---|---|
| Clone Library Name | barley_pub |
>Q9UQ35:SRRM2_HUMAN Serine/arginine repetitive matrix protein 2 - Homo sapiens (Human)| Length = 2752 Score = 36.6 bits (83), Expect = 0.32 Identities = 33/107 (30%), Positives = 47/107 (43%) Frame = +3 Query: 885 RTRRPCGSRAPTRRRTMTSRYSKASTFRARPGAKSRTPSSLTLSRGAPTRPWRSKRH*SR 1064 R+R +R +R RT T R S++ T R ++SRTP+ +P R R +R Sbjct: 583 RSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPAR 642 Query: 1065 S**TPSARIRSRMWRSA*RPCGTRIRWTRRSRPCRSSG*NSRRPFRK 1205 +R +R RS R R R R+ RS SR P R+ Sbjct: 643 RSGRSRSRTPARRGRSRSRTPARRGRSRSRTPARRSGRSRSRTPARR 689 Score = 34.3 bits (77), Expect = 1.6 Identities = 43/119 (36%), Positives = 55/119 (46%), Gaps = 14/119 (11%) Frame = +3 Query: 891 RRPCGSRAPTRRRTMTSRYSKASTFRARPGA-----KSRTPSSLTLSRGAPTRPWRSK-- 1049 +RP SR+ +R SR ++ +R A +SRTP+ SR RS+ Sbjct: 538 QRPGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSR 597 Query: 1050 ---RH*SRS**TPSARIRSRMWRSA*RPCGTRIRWTRRSR---PCRSSG*N-SRRPFRK 1205 R SRS TP+ R RSR A R TR RRSR P R SG + SR P R+ Sbjct: 598 TPTRRRSRS-RTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARR 655
>P13730:SGS3_DROER Salivary glue protein Sgs-3 precursor - Drosophila erecta (Fruit fly)| Length = 328 Score = 35.0 bits (79), Expect = 0.94 Identities = 38/121 (31%), Positives = 53/121 (43%) Frame = +3 Query: 888 TRRPCGSRAPTRRRTMTSRYSKASTFRARPGAKSRTPSSLTLSRGAPTRPWRSKRH*SRS 1067 TRR RAPTRR T +K +T R R P+ T +R APT+ +KR +R Sbjct: 127 TRRTTTKRAPTRRTT-----TKRATTR-------RNPTRRTTTRRAPTKRATTKRATTRR 174 Query: 1068 **TPSARIRSRMWRSA*RPCGTRIRWTRRSRPCRSSG*NSRRPFRKKMVWRTTWASLTTS 1247 P+ R +R R+ R T R T + P + + R P ++ R TT Sbjct: 175 --NPTKRKTTR--RTTVRATKTTKRATTKRAPTKRAT-TKRAPTKRVTTKRAPTKRATTK 229 Query: 1248 R 1250 R Sbjct: 230 R 230 Score = 33.9 bits (76), Expect = 2.1 Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 3/84 (3%) Frame = +3 Query: 888 TRRPCGSRAPTRRRTMTSRYSKASTFRARPGAKS---RTPSSLTLSRGAPTRPWRSKRH* 1058 T+R RAPT+R T +K +T + P ++ R P+ ++ APT+ +KR Sbjct: 203 TKRATTKRAPTKRVTTKRAPTKRATTKRAPTKRATTKRAPTKRATTKRAPTKRATTKRAP 262 Query: 1059 SRS**TPSARIRSRMWRSA*RPCG 1130 ++ T A R +PCG Sbjct: 263 TKRATTKRATARPTSKPCGCKPCG 286 Score = 32.0 bits (71), Expect = 7.9 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%) Frame = +3 Query: 876 ATCRTRRPCGSRAPTRRRTMTSRYSKASTFRARPGAKS---RTPSSLTLSRGAPTRPWRS 1046 AT T+R RAPT+R T +K T + P ++ R P+ ++ APT+ + Sbjct: 189 ATKTTKRATTKRAPTKRATTKRAPTKRVTTKRAPTKRATTKRAPTKRATTKRAPTKRATT 248 Query: 1047 KR 1052 KR Sbjct: 249 KR 250
>Q8BTI8:SRRM2_MOUSE Serine/arginine repetitive matrix protein 2 - Mus musculus (Mouse)| Length = 2703 Score = 34.3 bits (77), Expect = 1.6 Identities = 37/112 (33%), Positives = 50/112 (44%), Gaps = 5/112 (4%) Frame = +3 Query: 885 RTRRPCGSRAPTRRRTMTSRYSKASTFRARPGAKSRTPSSLTLSRGAPTRPWRSKRH*SR 1064 R+R +R +R RT R S++ T R ++SRTP+ +P R +R SR Sbjct: 580 RSRSRTPARRRSRSRTPARRRSRSRTPARRGRSRSRTPTRRRSRTRSPVR----RRSRSR 635 Query: 1065 S**TPSARIRS-----RMWRSA*RPCGTRIRWTRRSRPCRSSG*NSRRPFRK 1205 S S R RS R RS R R R R+ RS+ SR P R+ Sbjct: 636 SQARRSGRSRSRTPARRSGRSRSRTPARRGRSRSRTPARRSARSRSRTPARR 687 Score = 33.5 bits (75), Expect = 2.7 Identities = 40/115 (34%), Positives = 48/115 (41%) Frame = +3 Query: 906 SRAPTRRRTMTSRYSKASTFRARPGAKSRTPSSLTLSRGAPTRPWRSKRH*SRS**TPSA 1085 SR PTRRR+ T S R R ++S+ S P R RS R SR TP+ Sbjct: 614 SRTPTRRRSRTR-----SPVRRRSRSRSQARRSGRSRSRTPAR--RSGRSRSR---TPAR 663 Query: 1086 RIRSRMWRSA*RPCGTRIRWTRRSRPCRSSG*NSRRPFRKKMVWRTTWASLTTSR 1250 R RSR A R +R R R RS RR + +V R S T R Sbjct: 664 RGRSRSRTPARRSARSRSRTPARRGRSRSRTPARRRSRSRSLVRRGRSHSRTPQR 718 Score = 32.3 bits (72), Expect = 6.1 Identities = 36/114 (31%), Positives = 47/114 (41%), Gaps = 10/114 (8%) Frame = +3 Query: 894 RPCGSRAPTRRRTMTSRYSKASTFRARPGAKSRTPSSLTLSRGAPTRPWRS-------KR 1052 R +R +R RT R S AR ++SRTP+ P R RS +R Sbjct: 562 RSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPARRRSRSRTPARRGRSRSRTPTRRR 621 Query: 1053 H*SRS**TPSARIRSRMWRSA*RPCGTRIRWTRRSR---PCRSSG*NSRRPFRK 1205 +RS +R RS+ RS T R + RSR P R SR P R+ Sbjct: 622 SRTRSPVRRRSRSRSQARRSGRSRSRTPARRSGRSRSRTPARRGRSRSRTPARR 675 Score = 32.3 bits (72), Expect = 6.1 Identities = 38/103 (36%), Positives = 44/103 (42%) Frame = +3 Query: 888 TRRPCGSRAPTRRRTMTSRYSKASTFRARPGAKSRTPSSLTLSRGAPTRPWRSKRH*SRS 1067 TRR SR PTRRR SR R R ++SRTP + T P +R SRS Sbjct: 1884 TRRRSRSRTPTRRR---SRSRTPPVTRRR--SRSRTPPVTRRRSRSRTSPVTRRR--SRS 1936 Query: 1068 **TPSARIRSRMWRSA*RPCGTRIRWTRRSRPCRSSG*NSRRP 1196 +P R RSR S TR R R+ P SR P Sbjct: 1937 RTSPVTRRRSRSRTSP----VTRRRSRSRTSPVTRRRSRSRTP 1975
>Q6C8C5:CWC22_YARLI Pre-mRNA-splicing factor CWC22 - Yarrowia lipolytica (Candida| lipolytica) Length = 954 Score = 33.5 bits (75), Expect = 2.7 Identities = 35/107 (32%), Positives = 46/107 (42%) Frame = +3 Query: 885 RTRRPCGSRAPTRRRTMTSRYSKASTFRARPGAKSRTPSSLTLSRGAPTRPWRSKRH*SR 1064 R RR GSR RR++T S R+RP ++SR+ S G+P R R R SR Sbjct: 802 RRRRGVGSR----RRSLTRSPGSRSRPRSRPRSRSRSRSLSRDRTGSPPRGRRRSRSYSR 857 Query: 1065 S**TPSARIRSRMWRSA*RPCGTRIRWTRRSRPCRSSG*NSRRPFRK 1205 S +R RS + RP + R S SR P R+ Sbjct: 858 SPSRSYSRSRSYSRSPSPRPKSKGAKGRSSYRAASYS--RSRSPVRR 902
>Q9HCK8:CHD8_HUMAN Chromodomain-helicase-DNA-binding protein 8 - Homo sapiens (Human)| Length = 2302 Score = 33.5 bits (75), Expect = 2.7 Identities = 27/101 (26%), Positives = 38/101 (37%), Gaps = 2/101 (1%) Frame = +2 Query: 692 PFLIRGA--QPRADSTTAKIHHSLSLQSYAIIKHHQRHVDMSNXXXXXKMMLTNHKKAPT 865 PF++ GA P DS+T HH + HH H + + +P Sbjct: 2195 PFVMGGAPSSPHVDSSTMLHHHHHHPHPH----HHHHH--------HPGLRAPGYPSSPV 2242 Query: 866 STGSDVSYATTMRITGADPASDDDESLQQSVDFPSSTRSEE 988 +T S TT+R+ P DDDE + D S E Sbjct: 2243 TTAS----GTTLRLPPLQPEEDDDEDEEDDDDLSQGYDSSE 2279
>P55234:GLGL2_MAIZE Glucose-1-phosphate adenylyltransferase large subunit 2,| chloroplast precursor - Zea mays (Maize) Length = 521 Score = 32.7 bits (73), Expect = 4.7 Identities = 23/59 (38%), Positives = 28/59 (47%) Frame = -1 Query: 303 SAPPFATPSLMGIRRRMVGGRLYEELRENCWEIRALANKSLARWCWEIEGK*SQTRNVL 127 S P + M RR GG E +R NC IR NK+L R C+ G S T+ VL Sbjct: 5 SVLPLEGKACMSPVRRGSGGYGSERMRINCCSIRR--NKALRRMCFSARGAVSSTQCVL 61
>P36795:VE2_HPV49 Regulatory protein E2 - Human papillomavirus type 49| Length = 488 Score = 32.0 bits (71), Expect = 7.9 Identities = 32/87 (36%), Positives = 42/87 (48%), Gaps = 6/87 (6%) Frame = +3 Query: 888 TRRPCGSRAPTRRR-TMTSRYSKASTFRARPGAKSR----TPSSLTLSR-GAPTRPWRSK 1049 +RR SR TRRR TSR KAS R+R + SR + S+T SR +P R R + Sbjct: 279 SRRRSRSRTRTRRREASTSRSQKASRSRSRSRSTSRGSRGSGGSVTTSRDSSPKRTRRGR 338 Query: 1050 RH*SRS**TPSARIRSRMWRSA*RPCG 1130 RS +P+ S+ R R G Sbjct: 339 GRGGRSRRSPTPTSTSKRERRRSRSRG 365
>P30414:NKTR_HUMAN NK-tumor recognition protein - Homo sapiens (Human)| Length = 1462 Score = 32.0 bits (71), Expect = 7.9 Identities = 40/119 (33%), Positives = 52/119 (43%), Gaps = 18/119 (15%) Frame = +3 Query: 885 RTRRPCGSRAPTRRRTMTSRYSKASTFRARP-GAKSRTPSSLTLSRGAPTRPWRSKRH*S 1061 RTR S + +R R+ TS Y S R+R G SR T SR + R ++S R S Sbjct: 1328 RTRSVSYSHSRSRSRSSTSSYRSRSYSRSRSRGWYSR---GRTRSRSSSYRSYKSHRTSS 1384 Query: 1062 RS**T-----PSARIRSRMWRSA*RPCGTRIR------------WTRRSRPCRSSG*NS 1187 RS P +R RS + S +R R + RRSR CRS G +S Sbjct: 1385 RSRSRSSSYDPHSRSRSYTYDSYYSRSRSRSRSQRSDSYHRGRSYNRRSRSCRSYGSDS 1443
>Q8TFG9:YL61_SCHPO Uncharacterized serine/threonine-rich protein PB15E9.01c precursor -| Schizosaccharomyces pombe (Fission yeast) Length = 943 Score = 32.0 bits (71), Expect = 7.9 Identities = 25/69 (36%), Positives = 37/69 (53%) Frame = -1 Query: 1185 SFSPSCGTAASVSSSEYASHMVVRRNATSSSVFLRLVFITTCFSASSSATGVSVHRGSMS 1006 S + S T++S++SS S + + TSSS+ TT + +SSAT S+ + S Sbjct: 128 SLASSSITSSSLASSSITSSSLASSSTTSSSLASSSTNSTTSATPTSSATSSSLSSTAAS 187 Query: 1005 NCSAYDSSL 979 N SA SSL Sbjct: 188 N-SATSSSL 195 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 261,491,541 Number of extensions: 5527114 Number of successful extensions: 19651 Number of sequences better than 10.0: 9 Number of HSP's gapped: 19598 Number of HSP's successfully gapped: 15 Length of query: 554 Length of database: 100,686,439 Length adjustment: 118 Effective length of query: 436 Effective length of database: 68,319,629 Effective search space: 29787358244 Effective search space used: 29787358244 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
