ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf4h05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|CR381573.14| Zebrafish DNA sequence from clone DKEY-23M15 in... 44 0.97
2dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.97
3emb|AL606601.3|OSJN00029 Oryza sativa genomic DNA, chromosome 4,... 44 0.97
4emb|BX005057.8| Zebrafish DNA sequence from clone DKEY-12L12 in ... 44 0.97
5ref|NM_001072317.1| Oryza sativa (japonica cultivar-group) Os11g... 42 3.8
6gb|AE014297.2| Drosophila melanogaster chromosome 3R, complete s... 42 3.8
7gb|AC112209.4| Oryza sativa (japonica cultivar-group) chromosome... 42 3.8
8gb|AC122228.4| Mus musculus BAC clone RP23-131N12 from chromosom... 42 3.8
9gb|AC008953.7| Homo sapiens chromosome 5 clone CTD-2339M3, compl... 42 3.8
10dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 3.8
11dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 3.8
12emb|AL121826.11|HS1010E17 Human DNA sequence from clone RP5-1010... 42 3.8
13gb|AC035140.7| Homo sapiens chromosome 5 clone CTD-2631K10, comp... 42 3.8
14gb|AC008142.2|AC008142 Drosophila melanogaster, chromosome 3R, r... 42 3.8
15gb|AC007711.9|AC007711 Drosophila melanogaster, chromosome 3R, r... 42 3.8
16dbj|AP004307.2| Oryza sativa (japonica cultivar-group) genomic D... 42 3.8
17dbj|AK109939.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 3.8
18dbj|AK106277.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 3.8
19emb|BX649611.8| Mouse DNA sequence from clone RP23-445E3 on chro... 42 3.8
20emb|AL844161.18| Mouse DNA sequence from clone RP23-343K11 on ch... 42 3.8
21gb|AC132382.3| Mus musculus BAC clone RP23-425E9 from 8, complet... 42 3.8
22emb|CT025584.18| Mouse DNA sequence from clone RP23-78N7 on chro... 42 3.8
23emb|AL163613.2|CNS01RIJ Human chromosome 14 DNA sequence BAC R-2... 42 3.8
24gb|AC165257.2| Mus musculus BAC clone RP23-162D3 from chromosome... 42 3.8

>emb|CR381573.14| Zebrafish DNA sequence from clone DKEY-23M15 in linkage group 24,
             complete sequence
          Length = 120376
 Score = 44.1 bits (22), Expect = 0.97
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 967   tgtgaaatgatgttgatttgtt 988
             ||||||||||||||||||||||
Sbjct: 31239 tgtgaaatgatgttgatttgtt 31260



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4
          Length = 35498469

 Score = 44.1 bits (22), Expect = 0.97
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                             
Query: 709     ccagctgtccatgcctcgccggcggtggag 738
               ||||||||||||||||||| |||| |||||
Sbjct: 7959873 ccagctgtccatgcctcgcgggcgttggag 7959902



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>emb|AL606601.3|OSJN00029 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0055H05,
             complete sequence
          Length = 152329

 Score = 44.1 bits (22), Expect = 0.97
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 709   ccagctgtccatgcctcgccggcggtggag 738
             ||||||||||||||||||| |||| |||||
Sbjct: 21997 ccagctgtccatgcctcgcgggcgttggag 22026



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>emb|BX005057.8| Zebrafish DNA sequence from clone DKEY-12L12 in linkage group 24,
             complete sequence
          Length = 238625

 Score = 44.1 bits (22), Expect = 0.97
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 967   tgtgaaatgatgttgatttgtt 988
             ||||||||||||||||||||||
Sbjct: 85659 tgtgaaatgatgttgatttgtt 85638



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>ref|NM_001072317.1| Oryza sativa (japonica cultivar-group) Os11g0154500 (Os11g0154500)
           mRNA, complete cds
          Length = 2329

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 569 gaacacgacgccgccgccgcc 589
           |||||||||||||||||||||
Sbjct: 841 gaacacgacgccgccgccgcc 821



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>gb|AE014297.2| Drosophila melanogaster chromosome 3R, complete sequence
          Length = 27905053

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 323      gtgcttgtgtgtggctactgt 343
                |||||||||||||||||||||
Sbjct: 15637212 gtgcttgtgtgtggctactgt 15637232



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>gb|AC112209.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0030I09 map C83B, complete sequence
          Length = 123477

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 569   gaacacgacgccgccgccgcc 589
             |||||||||||||||||||||
Sbjct: 88119 gaacacgacgccgccgccgcc 88139



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>gb|AC122228.4| Mus musculus BAC clone RP23-131N12 from chromosome 12, complete
             sequence
          Length = 202970

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 873   ctctgtttttctttcctcctc 893
             |||||||||||||||||||||
Sbjct: 80027 ctctgtttttctttcctcctc 80007



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>gb|AC008953.7| Homo sapiens chromosome 5 clone CTD-2339M3, complete sequence
          Length = 95401

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 381   cccaaggagaaagaaccgccg 401
             |||||||||||||||||||||
Sbjct: 86990 cccaaggagaaagaaccgccg 87010



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11
          Length = 28386948

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 569     gaacacgacgccgccgccgcc 589
               |||||||||||||||||||||
Sbjct: 2534285 gaacacgacgccgccgccgcc 2534265



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7
          Length = 29644043

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 870     ctgctctgtttttctttcctc 890
               |||||||||||||||||||||
Sbjct: 4060622 ctgctctgtttttctttcctc 4060642



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>emb|AL121826.11|HS1010E17 Human DNA sequence from clone RP5-1010E17 on chromosome 20 Contains a
             putative novel gene, ESTs, STSs and GSSs, complete
             sequence
          Length = 126045

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 865   aagctctgctctgtttttctttcct 889
             |||||||||||||||||| ||||||
Sbjct: 93003 aagctctgctctgtttttttttcct 93027



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>gb|AC035140.7| Homo sapiens chromosome 5 clone CTD-2631K10, complete sequence
          Length = 61965

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 381   cccaaggagaaagaaccgccg 401
             |||||||||||||||||||||
Sbjct: 12823 cccaaggagaaagaaccgccg 12843



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>gb|AC008142.2|AC008142 Drosophila melanogaster, chromosome 3R, region 92B-92B, BAC clone
              BACR48D03, complete sequence
          Length = 175917

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 323    gtgcttgtgtgtggctactgt 343
              |||||||||||||||||||||
Sbjct: 120443 gtgcttgtgtgtggctactgt 120463



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>gb|AC007711.9|AC007711 Drosophila melanogaster, chromosome 3R, region 92B-92B, BAC clone
             BACR02O09, complete sequence
          Length = 155751

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 323   gtgcttgtgtgtggctactgt 343
             |||||||||||||||||||||
Sbjct: 26752 gtgcttgtgtgtggctactgt 26772



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>dbj|AP004307.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0534H07
          Length = 144689

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 870   ctgctctgtttttctttcctc 890
             |||||||||||||||||||||
Sbjct: 53480 ctgctctgtttttctttcctc 53500



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>dbj|AK109939.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-154-A12, full
           insert sequence
          Length = 1174

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 569 gaacacgacgccgccgccgcc 589
           |||||||||||||||||||||
Sbjct: 720 gaacacgacgccgccgccgcc 700



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>dbj|AK106277.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-100-H06, full
           insert sequence
          Length = 2330

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 569 gaacacgacgccgccgccgcc 589
           |||||||||||||||||||||
Sbjct: 841 gaacacgacgccgccgccgcc 821



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>emb|BX649611.8| Mouse DNA sequence from clone RP23-445E3 on chromosome 4, complete
             sequence
          Length = 41425

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 298   cggctgttttgctaaaataaa 318
             |||||||||||||||||||||
Sbjct: 39723 cggctgttttgctaaaataaa 39743



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>emb|AL844161.18| Mouse DNA sequence from clone RP23-343K11 on chromosome 4, complete
           sequence
          Length = 224031

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 298 cggctgttttgctaaaataaa 318
           |||||||||||||||||||||
Sbjct: 298 cggctgttttgctaaaataaa 318



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>gb|AC132382.3| Mus musculus BAC clone RP23-425E9 from 8, complete sequence
          Length = 218283

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 876   tgtttttctttcctcctctag 896
             |||||||||||||||||||||
Sbjct: 46476 tgtttttctttcctcctctag 46496



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>emb|CT025584.18| Mouse DNA sequence from clone RP23-78N7 on chromosome 16, complete
              sequence
          Length = 209542

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 874    tctgtttttctttcctcctct 894
              |||||||||||||||||||||
Sbjct: 135441 tctgtttttctttcctcctct 135421



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>emb|AL163613.2|CNS01RIJ Human chromosome 14 DNA sequence BAC R-25I19 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 150312

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 859   ctttggaagctctgctctgtttttc 883
             ||||||||||||||||||| |||||
Sbjct: 14406 ctttggaagctctgctctggttttc 14430



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>gb|AC165257.2| Mus musculus BAC clone RP23-162D3 from chromosome 9, complete sequence
          Length = 181162

 Score = 42.1 bits (21), Expect = 3.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 873    ctctgtttttctttcctcctc 893
              |||||||||||||||||||||
Sbjct: 139376 ctctgtttttctttcctcctc 139356


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 171,995,115
Number of extensions: 9280955
Number of successful extensions: 213213
Number of sequences better than 10.0: 24
Number of HSP's gapped: 213213
Number of HSP's successfully gapped: 24
Length of query: 1011
Length of database: 18,610,659,111
Length adjustment: 23
Effective length of query: 988
Effective length of database: 18,503,978,556
Effective search space: 18281930813328
Effective search space used: 18281930813328
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
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