ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf164j16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AF020051.3| Blackcurrant reversion virus RNA2 polyprotein mRN... 48 0.044
2gb|AC182720.2| Populus trichocarpa clone Pop1-91P4, complete seq... 46 0.17
3gb|AC087434.3| Pan troglodytes clone RP43-90F9, complete sequence 44 0.69
4gb|AC110524.11| Mus musculus chromosome 9, clone RP23-403L22, co... 44 0.69
5emb|CT025575.12| Mouse DNA sequence from clone RP23-272A7 on chr... 44 0.69
6emb|BX546451.2| Human DNA sequence from clone WI2-8737H7 on chro... 42 2.7
7emb|AL590138.7| Human DNA sequence from clone RP11-243A2 on chro... 42 2.7
8emb|AL022574.7|HS1111N9 Human DNA sequence from clone RP5-1111N9... 42 2.7

>gb|AF020051.3| Blackcurrant reversion virus RNA2 polyprotein mRNA, complete cds
          Length = 6405
 Score = 48.1 bits (24), Expect = 0.044
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 581 tttgttttggtttgctttaccatg 604
           ||||||||||||||||||||||||
Sbjct: 141 tttgttttggtttgctttaccatg 164



to top

>gb|AC182720.2| Populus trichocarpa clone Pop1-91P4, complete sequence
          Length = 102325

 Score = 46.1 bits (23), Expect = 0.17
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 576 tatgatttgttttggtttgcttt 598
           |||||||||||||||||||||||
Sbjct: 623 tatgatttgttttggtttgcttt 645



to top

>gb|AC087434.3| Pan troglodytes clone RP43-90F9, complete sequence
          Length = 161716

 Score = 44.1 bits (22), Expect = 0.69
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 140    agacggctgggagaaccagcag 161
              ||||||||||||||||||||||
Sbjct: 134161 agacggctgggagaaccagcag 134182



to top

>gb|AC110524.11| Mus musculus chromosome 9, clone RP23-403L22, complete sequence
          Length = 225122

 Score = 44.1 bits (22), Expect = 0.69
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 582   ttgttttggtttgctttaccat 603
             ||||||||||||||||||||||
Sbjct: 72722 ttgttttggtttgctttaccat 72701



to top

>emb|CT025575.12| Mouse DNA sequence from clone RP23-272A7 on chromosome 9, complete
              sequence
          Length = 232192

 Score = 44.1 bits (22), Expect = 0.69
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 582    ttgttttggtttgctttaccat 603
              ||||||||||||||||||||||
Sbjct: 118858 ttgttttggtttgctttaccat 118879



to top

>emb|BX546451.2| Human DNA sequence from clone WI2-8737H7 on chromosome X, complete
             sequence
          Length = 38017

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 570   ctgaaatatgatttgttttgg 590
             |||||||||||||||||||||
Sbjct: 26084 ctgaaatatgatttgttttgg 26104



to top

>emb|AL590138.7| Human DNA sequence from clone RP11-243A2 on chromosome 1 Contains part of
              the PLXNA2 gene for plexin A2, complete sequence
          Length = 164057

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 303    cattccttcctgctcccaggg 323
              |||||||||||||||||||||
Sbjct: 101503 cattccttcctgctcccaggg 101523



to top

>emb|AL022574.7|HS1111N9 Human DNA sequence from clone RP5-1111N9 on chromosome Xq21.1-21.3,
             complete sequence
          Length = 148521

 Score = 42.1 bits (21), Expect = 2.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 570   ctgaaatatgatttgttttgg 590
             |||||||||||||||||||||
Sbjct: 79731 ctgaaatatgatttgttttgg 79751


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 103,847,422
Number of extensions: 5637809
Number of successful extensions: 105759
Number of sequences better than 10.0: 8
Number of HSP's gapped: 105759
Number of HSP's successfully gapped: 8
Length of query: 723
Length of database: 18,610,659,111
Length adjustment: 22
Effective length of query: 701
Effective length of database: 18,508,616,841
Effective search space: 12974540405541
Effective search space used: 12974540405541
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
to top