ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf153p08 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 313 bits (158), Expect = 1e-81 Identities = 220/240 (91%), Gaps = 3/240 (1%) Strand = Plus / Minus Query: 623 ggaagtcgtgcgtgtcggagtgctcgctggacgacgtggacctggaggccgggccggcgg 682 |||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||| Sbjct: 36592987 ggaagtcgtgcgtgtcggagtgctcgctgggcgacgtggacctcgaggccgggctggc-- 36592930 Query: 683 ccgagatcaccaaggccagccccgacaaggacgagatgaactgccgcatctgccacctgg 742 |||||||| |||||||||||| |||| || ||||| ||| ||||||||||||||||| | Sbjct: 36592929 -cgagatcagcaaggccagcccggacacggccgagaggaattgccgcatctgccacctcg 36592871 Query: 743 gcctcgagagcgccgcggccgagtccggcgccggcatcgtgctcggctgctcctgcaagg 802 |||||||||||||||| |||||||||||| ||||||| | ||||||||||||||||||| Sbjct: 36592870 gcctcgagagcgccgccgccgagtccggctccggcatgttcctcggctgctcctgcaagg 36592811 Query: 803 acgacctctcctgcgcccacaagcagtgcgccgagacctggttcaagatcaggggcaaca 862 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| Sbjct: 36592810 acgacctctcctgcgcccataagcagtgcgccgagacctggttcaagatcaggggaaaca 36592751 Score = 101 bits (51), Expect = 7e-18 Identities = 90/103 (87%) Strand = Plus / Minus Query: 985 cggaggttctggcaaggccaccggttcctcaacttcctcctggcctgcatggtgttcgcc 1044 |||||||| ||||||||||||||||| ||||||||||| || || ||||||||||| || Sbjct: 36591134 cggaggttttggcaaggccaccggtttctcaacttccttcttgcttgcatggtgtttgct 36591075 Query: 1045 ttcgtcatatcctggctcttccacttcaacgtccccggatgag 1087 || || ||||| |||||||| |||||||| ||||| ||||||| Sbjct: 36591074 tttgttatatcttggctctttcacttcaatgtccctggatgag 36591032 Score = 67.9 bits (34), Expect = 9e-08 Identities = 70/82 (85%) Strand = Plus / Minus Query: 864 gatctgcgaagtctgcggctcgacggcgtgcaacgtggttggtttcggcgatgcggagtt 923 |||||||||| |||| ||||| || || ||||| ||||| ||| |||| ||||| ||||| Sbjct: 36591255 gatctgcgaaatctgtggctcaactgcatgcaatgtggtaggtatcggtgatgccgagtt 36591196 Query: 924 catggagcagtggaacgaatca 945 ||| ||||||||||| |||||| Sbjct: 36591195 catcgagcagtggaatgaatca 36591174 Score = 52.0 bits (26), Expect = 0.006 Identities = 29/30 (96%) Strand = Plus / Minus Query: 546 ctcgacgtccgcgtccgtccgctccggcgc 575 |||||||| ||||||||||||||||||||| Sbjct: 36593049 ctcgacgtgcgcgtccgtccgctccggcgc 36593020 Score = 46.1 bits (23), Expect = 0.35 Identities = 23/23 (100%) Strand = Plus / Minus Query: 524 ccgccgcggccgaggaccgcgcc 546 ||||||||||||||||||||||| Sbjct: 5529521 ccgccgcggccgaggaccgcgcc 5529499 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Plus Query: 401 gcgttgccgccggcggcggcgg 422 |||||||||||||||||||||| Sbjct: 2487402 gcgttgccgccggcggcggcgg 2487423 Score = 42.1 bits (21), Expect = 5.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 402 cgttgccgccggcggcggcgg 422 ||||||||||||||||||||| Sbjct: 12660877 cgttgccgccggcggcggcgg 12660857
>dbj|AP003242.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0414E03 Length = 139598 Score = 313 bits (158), Expect = 1e-81 Identities = 220/240 (91%), Gaps = 3/240 (1%) Strand = Plus / Minus Query: 623 ggaagtcgtgcgtgtcggagtgctcgctggacgacgtggacctggaggccgggccggcgg 682 |||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||| Sbjct: 106362 ggaagtcgtgcgtgtcggagtgctcgctgggcgacgtggacctcgaggccgggctggc-- 106305 Query: 683 ccgagatcaccaaggccagccccgacaaggacgagatgaactgccgcatctgccacctgg 742 |||||||| |||||||||||| |||| || ||||| ||| ||||||||||||||||| | Sbjct: 106304 -cgagatcagcaaggccagcccggacacggccgagaggaattgccgcatctgccacctcg 106246 Query: 743 gcctcgagagcgccgcggccgagtccggcgccggcatcgtgctcggctgctcctgcaagg 802 |||||||||||||||| |||||||||||| ||||||| | ||||||||||||||||||| Sbjct: 106245 gcctcgagagcgccgccgccgagtccggctccggcatgttcctcggctgctcctgcaagg 106186 Query: 803 acgacctctcctgcgcccacaagcagtgcgccgagacctggttcaagatcaggggcaaca 862 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| Sbjct: 106185 acgacctctcctgcgcccataagcagtgcgccgagacctggttcaagatcaggggaaaca 106126 Score = 101 bits (51), Expect = 7e-18 Identities = 90/103 (87%) Strand = Plus / Minus Query: 985 cggaggttctggcaaggccaccggttcctcaacttcctcctggcctgcatggtgttcgcc 1044 |||||||| ||||||||||||||||| ||||||||||| || || ||||||||||| || Sbjct: 104509 cggaggttttggcaaggccaccggtttctcaacttccttcttgcttgcatggtgtttgct 104450 Query: 1045 ttcgtcatatcctggctcttccacttcaacgtccccggatgag 1087 || || ||||| |||||||| |||||||| ||||| ||||||| Sbjct: 104449 tttgttatatcttggctctttcacttcaatgtccctggatgag 104407 Score = 67.9 bits (34), Expect = 9e-08 Identities = 70/82 (85%) Strand = Plus / Minus Query: 864 gatctgcgaagtctgcggctcgacggcgtgcaacgtggttggtttcggcgatgcggagtt 923 |||||||||| |||| ||||| || || ||||| ||||| ||| |||| ||||| ||||| Sbjct: 104630 gatctgcgaaatctgtggctcaactgcatgcaatgtggtaggtatcggtgatgccgagtt 104571 Query: 924 catggagcagtggaacgaatca 945 ||| ||||||||||| |||||| Sbjct: 104570 catcgagcagtggaatgaatca 104549 Score = 52.0 bits (26), Expect = 0.006 Identities = 29/30 (96%) Strand = Plus / Minus Query: 546 ctcgacgtccgcgtccgtccgctccggcgc 575 |||||||| ||||||||||||||||||||| Sbjct: 106424 ctcgacgtgcgcgtccgtccgctccggcgc 106395
>dbj|AP004072.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0529H11 Length = 165969 Score = 313 bits (158), Expect = 1e-81 Identities = 220/240 (91%), Gaps = 3/240 (1%) Strand = Plus / Minus Query: 623 ggaagtcgtgcgtgtcggagtgctcgctggacgacgtggacctggaggccgggccggcgg 682 |||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||| Sbjct: 66253 ggaagtcgtgcgtgtcggagtgctcgctgggcgacgtggacctcgaggccgggctggc-- 66196 Query: 683 ccgagatcaccaaggccagccccgacaaggacgagatgaactgccgcatctgccacctgg 742 |||||||| |||||||||||| |||| || ||||| ||| ||||||||||||||||| | Sbjct: 66195 -cgagatcagcaaggccagcccggacacggccgagaggaattgccgcatctgccacctcg 66137 Query: 743 gcctcgagagcgccgcggccgagtccggcgccggcatcgtgctcggctgctcctgcaagg 802 |||||||||||||||| |||||||||||| ||||||| | ||||||||||||||||||| Sbjct: 66136 gcctcgagagcgccgccgccgagtccggctccggcatgttcctcggctgctcctgcaagg 66077 Query: 803 acgacctctcctgcgcccacaagcagtgcgccgagacctggttcaagatcaggggcaaca 862 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| Sbjct: 66076 acgacctctcctgcgcccataagcagtgcgccgagacctggttcaagatcaggggaaaca 66017 Score = 101 bits (51), Expect = 7e-18 Identities = 90/103 (87%) Strand = Plus / Minus Query: 985 cggaggttctggcaaggccaccggttcctcaacttcctcctggcctgcatggtgttcgcc 1044 |||||||| ||||||||||||||||| ||||||||||| || || ||||||||||| || Sbjct: 64400 cggaggttttggcaaggccaccggtttctcaacttccttcttgcttgcatggtgtttgct 64341 Query: 1045 ttcgtcatatcctggctcttccacttcaacgtccccggatgag 1087 || || ||||| |||||||| |||||||| ||||| ||||||| Sbjct: 64340 tttgttatatcttggctctttcacttcaatgtccctggatgag 64298 Score = 67.9 bits (34), Expect = 9e-08 Identities = 70/82 (85%) Strand = Plus / Minus Query: 864 gatctgcgaagtctgcggctcgacggcgtgcaacgtggttggtttcggcgatgcggagtt 923 |||||||||| |||| ||||| || || ||||| ||||| ||| |||| ||||| ||||| Sbjct: 64521 gatctgcgaaatctgtggctcaactgcatgcaatgtggtaggtatcggtgatgccgagtt 64462 Query: 924 catggagcagtggaacgaatca 945 ||| ||||||||||| |||||| Sbjct: 64461 catcgagcagtggaatgaatca 64440 Score = 52.0 bits (26), Expect = 0.006 Identities = 29/30 (96%) Strand = Plus / Minus Query: 546 ctcgacgtccgcgtccgtccgctccggcgc 575 |||||||| ||||||||||||||||||||| Sbjct: 66315 ctcgacgtgcgcgtccgtccgctccggcgc 66286
>ref|NM_001062246.1| Oryza sativa (japonica cultivar-group) Os05g0452800 (Os05g0452800) mRNA, complete cds Length = 1635 Score = 258 bits (130), Expect = 5e-65 Identities = 213/240 (88%), Gaps = 3/240 (1%) Strand = Plus / Plus Query: 627 gtcgtgcgtgtcggagtgctcgctggacgacgtggacctggaggccgggccggcggccga 686 ||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||| Sbjct: 689 gtcgtgcgtgtcggagtgctcgctggacgacgtcgacctggaggccgggctggc---cga 745 Query: 687 gatcaccaaggccagccccgacaaggacgagatgaactgccgcatctgccacctgggcct 746 | ||| ||||| ||||||||| |||| |||| | ||||||||| |||||||| ||||| Sbjct: 746 ggtcatcaagggcagccccgagaaggcggagaggtgctgccgcatttgccaccttggcct 805 Query: 747 cgagagcgccgcggccgagtccggcgccggcatcgtgctcggctgctcctgcaaggacga 806 ||||| ||| ||||| |||||||||||||||||| |||||||||||||||||||| ||| Sbjct: 806 cgagaccgcggcggcggagtccggcgccggcatcacgctcggctgctcctgcaagggcga 865 Query: 807 cctctcctgcgcccacaagcagtgcgccgagacctggttcaagatcaggggcaacaagat 866 |||||||| | |||||||||||||||||||||| ||||||||||| || ||||||||||| Sbjct: 866 cctctcctactcccacaagcagtgcgccgagacatggttcaagattagaggcaacaagat 925 Score = 60.0 bits (30), Expect = 2e-05 Identities = 72/86 (83%) Strand = Plus / Plus Query: 994 tggcaaggccaccggttcctcaacttcctcctggcctgcatggtgttcgccttcgtcata 1053 |||||||| || |||||||| ||||| || || || |||||||| |||||||| || || Sbjct: 1053 tggcaagggcatcggttcctgaactttcttcttgcttgcatggttttcgcctttgttatc 1112 Query: 1054 tcctggctcttccacttcaacgtccc 1079 || |||||||| || ||||||||||| Sbjct: 1113 tcatggctctttcatttcaacgtccc 1138
>dbj|AK102413.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033093B10, full insert sequence Length = 1637 Score = 258 bits (130), Expect = 5e-65 Identities = 213/240 (88%), Gaps = 3/240 (1%) Strand = Plus / Plus Query: 627 gtcgtgcgtgtcggagtgctcgctggacgacgtggacctggaggccgggccggcggccga 686 ||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||| Sbjct: 691 gtcgtgcgtgtcggagtgctcgctggacgacgtcgacctggaggccgggctggc---cga 747 Query: 687 gatcaccaaggccagccccgacaaggacgagatgaactgccgcatctgccacctgggcct 746 | ||| ||||| ||||||||| |||| |||| | ||||||||| |||||||| ||||| Sbjct: 748 ggtcatcaagggcagccccgagaaggcggagaggtgctgccgcatttgccaccttggcct 807 Query: 747 cgagagcgccgcggccgagtccggcgccggcatcgtgctcggctgctcctgcaaggacga 806 ||||| ||| ||||| |||||||||||||||||| |||||||||||||||||||| ||| Sbjct: 808 cgagaccgcggcggcggagtccggcgccggcatcacgctcggctgctcctgcaagggcga 867 Query: 807 cctctcctgcgcccacaagcagtgcgccgagacctggttcaagatcaggggcaacaagat 866 |||||||| | |||||||||||||||||||||| ||||||||||| || ||||||||||| Sbjct: 868 cctctcctactcccacaagcagtgcgccgagacatggttcaagattagaggcaacaagat 927 Score = 60.0 bits (30), Expect = 2e-05 Identities = 72/86 (83%) Strand = Plus / Plus Query: 994 tggcaaggccaccggttcctcaacttcctcctggcctgcatggtgttcgccttcgtcata 1053 |||||||| || |||||||| ||||| || || || |||||||| |||||||| || || Sbjct: 1055 tggcaagggcatcggttcctgaactttcttcttgcttgcatggttttcgcctttgttatc 1114 Query: 1054 tcctggctcttccacttcaacgtccc 1079 || |||||||| || ||||||||||| Sbjct: 1115 tcatggctctttcatttcaacgtccc 1140
>gb|AC097176.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1576_F01, complete sequence Length = 119525 Score = 254 bits (128), Expect = 8e-64 Identities = 211/238 (88%), Gaps = 3/238 (1%) Strand = Plus / Plus Query: 627 gtcgtgcgtgtcggagtgctcgctggacgacgtggacctggaggccgggccggcggccga 686 ||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||| Sbjct: 112715 gtcgtgcgtgtcggagtgctcgctggacgacgtcgacctggaggccgggctggc---cga 112771 Query: 687 gatcaccaaggccagccccgacaaggacgagatgaactgccgcatctgccacctgggcct 746 | ||| ||||| ||||||||| |||| |||| | ||||||||| |||||||| ||||| Sbjct: 112772 ggtcatcaagggcagccccgagaaggcggagaggtgctgccgcatttgccaccttggcct 112831 Query: 747 cgagagcgccgcggccgagtccggcgccggcatcgtgctcggctgctcctgcaaggacga 806 ||||| ||| ||||| |||||||||||||||||| |||||||||||||||||||| ||| Sbjct: 112832 cgagaccgcggcggcggagtccggcgccggcatcacgctcggctgctcctgcaagggcga 112891 Query: 807 cctctcctgcgcccacaagcagtgcgccgagacctggttcaagatcaggggcaacaag 864 |||||||| | |||||||||||||||||||||| ||||||||||| || ||||||||| Sbjct: 112892 cctctcctactcccacaagcagtgcgccgagacatggttcaagattagaggcaacaag 112949 Score = 60.0 bits (30), Expect = 2e-05 Identities = 72/86 (83%) Strand = Plus / Plus Query: 994 tggcaaggccaccggttcctcaacttcctcctggcctgcatggtgttcgccttcgtcata 1053 |||||||| || |||||||| ||||| || || || |||||||| |||||||| || || Sbjct: 114960 tggcaagggcatcggttcctgaactttcttcttgcttgcatggttttcgcctttgttatc 115019 Query: 1054 tcctggctcttccacttcaacgtccc 1079 || |||||||| || ||||||||||| Sbjct: 115020 tcatggctctttcatttcaacgtccc 115045
>gb|AC093919.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1126_D01, complete sequence Length = 112761 Score = 254 bits (128), Expect = 8e-64 Identities = 211/238 (88%), Gaps = 3/238 (1%) Strand = Plus / Plus Query: 627 gtcgtgcgtgtcggagtgctcgctggacgacgtggacctggaggccgggccggcggccga 686 ||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||| Sbjct: 18210 gtcgtgcgtgtcggagtgctcgctggacgacgtcgacctggaggccgggctggc---cga 18266 Query: 687 gatcaccaaggccagccccgacaaggacgagatgaactgccgcatctgccacctgggcct 746 | ||| ||||| ||||||||| |||| |||| | ||||||||| |||||||| ||||| Sbjct: 18267 ggtcatcaagggcagccccgagaaggcggagaggtgctgccgcatttgccaccttggcct 18326 Query: 747 cgagagcgccgcggccgagtccggcgccggcatcgtgctcggctgctcctgcaaggacga 806 ||||| ||| ||||| |||||||||||||||||| |||||||||||||||||||| ||| Sbjct: 18327 cgagaccgcggcggcggagtccggcgccggcatcacgctcggctgctcctgcaagggcga 18386 Query: 807 cctctcctgcgcccacaagcagtgcgccgagacctggttcaagatcaggggcaacaag 864 |||||||| | |||||||||||||||||||||| ||||||||||| || ||||||||| Sbjct: 18387 cctctcctactcccacaagcagtgcgccgagacatggttcaagattagaggcaacaag 18444 Score = 60.0 bits (30), Expect = 2e-05 Identities = 72/86 (83%) Strand = Plus / Plus Query: 994 tggcaaggccaccggttcctcaacttcctcctggcctgcatggtgttcgccttcgtcata 1053 |||||||| || |||||||| ||||| || || || |||||||| |||||||| || || Sbjct: 20455 tggcaagggcatcggttcctgaactttcttcttgcttgcatggttttcgcctttgttatc 20514 Query: 1054 tcctggctcttccacttcaacgtccc 1079 || |||||||| || ||||||||||| Sbjct: 20515 tcatggctctttcatttcaacgtccc 20540
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5 Length = 29737217 Score = 254 bits (128), Expect = 8e-64 Identities = 211/238 (88%), Gaps = 3/238 (1%) Strand = Plus / Plus Query: 627 gtcgtgcgtgtcggagtgctcgctggacgacgtggacctggaggccgggccggcggccga 686 ||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||| Sbjct: 22064229 gtcgtgcgtgtcggagtgctcgctggacgacgtcgacctggaggccgggctggc---cga 22064285 Query: 687 gatcaccaaggccagccccgacaaggacgagatgaactgccgcatctgccacctgggcct 746 | ||| ||||| ||||||||| |||| |||| | ||||||||| |||||||| ||||| Sbjct: 22064286 ggtcatcaagggcagccccgagaaggcggagaggtgctgccgcatttgccaccttggcct 22064345 Query: 747 cgagagcgccgcggccgagtccggcgccggcatcgtgctcggctgctcctgcaaggacga 806 ||||| ||| ||||| |||||||||||||||||| |||||||||||||||||||| ||| Sbjct: 22064346 cgagaccgcggcggcggagtccggcgccggcatcacgctcggctgctcctgcaagggcga 22064405 Query: 807 cctctcctgcgcccacaagcagtgcgccgagacctggttcaagatcaggggcaacaag 864 |||||||| | |||||||||||||||||||||| ||||||||||| || ||||||||| Sbjct: 22064406 cctctcctactcccacaagcagtgcgccgagacatggttcaagattagaggcaacaag 22064463 Score = 60.0 bits (30), Expect = 2e-05 Identities = 72/86 (83%) Strand = Plus / Plus Query: 994 tggcaaggccaccggttcctcaacttcctcctggcctgcatggtgttcgccttcgtcata 1053 |||||||| || |||||||| ||||| || || || |||||||| |||||||| || || Sbjct: 22066474 tggcaagggcatcggttcctgaactttcttcttgcttgcatggttttcgcctttgttatc 22066533 Query: 1054 tcctggctcttccacttcaacgtccc 1079 || |||||||| || ||||||||||| Sbjct: 22066534 tcatggctctttcatttcaacgtccc 22066559 Score = 46.1 bits (23), Expect = 0.35 Identities = 23/23 (100%) Strand = Plus / Minus Query: 524 ccgccgcggccgaggaccgcgcc 546 ||||||||||||||||||||||| Sbjct: 24391422 ccgccgcggccgaggaccgcgcc 24391400
>gb|AY106350.1| Zea mays PCO123421 mRNA sequence Length = 959 Score = 198 bits (100), Expect = 4e-47 Identities = 204/238 (85%), Gaps = 3/238 (1%) Strand = Plus / Plus Query: 627 gtcgtgcgtgtcggagtgctcgctggacgacgtggacctggaggccgggccggcggccga 686 |||||||||||| ||| |||||||||||||||| |||||||||||||| | | ||| Sbjct: 562 gtcgtgcgtgtcagagggctcgctggacgacgttgacctggaggccggactgag---cga 618 Query: 687 gatcaccaaggccagccccgacaaggacgagatgaactgccgcatctgccacctgggcct 746 ||||| |||||||||||| || ||| ||| |||||| ||||| |||||||| ||||| Sbjct: 619 gatcatcaaggccagccctgagaagaccgaacagaactgtcgcatttgccaccttggcct 678 Query: 747 cgagagcgccgcggccgagtccggcgccggcatcgtgctcggctgctcctgcaaggacga 806 |||||||| |||| ||||||||| ||||||||| |||||||||||||||||||| || Sbjct: 679 ggagagcgcggcggtcgagtccggtgccggcatcacgctcggctgctcctgcaaggggga 738 Query: 807 cctctcctgcgcccacaagcagtgcgccgagacctggttcaagatcaggggcaacaag 864 | | |||| ||||||||||||||||||||| ||||||||||||||||| ||||||||| Sbjct: 739 cttatcctacgcccacaagcagtgcgccgacacctggttcaagatcagaggcaacaag 796 Score = 42.1 bits (21), Expect = 5.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 484 tcggacgccgaggaccggtcgtggc 508 |||||||| |||||||||||||||| Sbjct: 407 tcggacgcggaggaccggtcgtggc 431
>emb|CT834317.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA113I16, full insert sequence Length = 1403 Score = 190 bits (96), Expect = 1e-44 Identities = 156/176 (88%) Strand = Plus / Plus Query: 687 gatcaccaaggccagccccgacaaggacgagatgaactgccgcatctgccacctgggcct 746 |||| ||||||||||||| |||| || ||||| ||| ||||||||||||||||| ||||| Sbjct: 84 gatcgccaaggccagcccggacacggccgagaggaattgccgcatctgccacctcggcct 143 Query: 747 cgagagcgccgcggccgagtccggcgccggcatcgtgctcggctgctcctgcaaggacga 806 ||| ||||||| |||||||||||| || |||| | ||||||||||||||||||||||| Sbjct: 144 cgacagcgccgtcgccgagtccggctccagcatgttcctcggctgctcctgcaaggacga 203 Query: 807 cctctcctgcgcccacaagcagtgcgccgagacctggttcaagatcaggggcaaca 862 ||||||||||||||| ||||| ||||| |||||||||||||| |||||||||||| Sbjct: 204 cctctcctgcgcccataagcaatgcgctgagacctggttcaaattcaggggcaaca 259
>emb|CR855233.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0303A11-B0406H05, complete sequence Length = 86842 Score = 190 bits (96), Expect = 1e-44 Identities = 156/176 (88%) Strand = Plus / Minus Query: 687 gatcaccaaggccagccccgacaaggacgagatgaactgccgcatctgccacctgggcct 746 |||| ||||||||||||| |||| || ||||| ||| ||||||||||||||||| ||||| Sbjct: 63973 gatcgccaaggccagcccggacacggccgagaggaattgccgcatctgccacctcggcct 63914 Query: 747 cgagagcgccgcggccgagtccggcgccggcatcgtgctcggctgctcctgcaaggacga 806 ||| ||||||| |||||||||||| || |||| | ||||||||||||||||||||||| Sbjct: 63913 cgacagcgccgtcgccgagtccggctccagcatgttcctcggctgctcctgcaaggacga 63854 Query: 807 cctctcctgcgcccacaagcagtgcgccgagacctggttcaagatcaggggcaaca 862 ||||||||||||||| ||||| ||||| |||||||||||||| |||||||||||| Sbjct: 63853 cctctcctgcgcccataagcaatgcgctgagacctggttcaaattcaggggcaaca 63798
>ref|NM_001060189.1| Oryza sativa (japonica cultivar-group) Os04g0581600 (Os04g0581600) mRNA, partial cds Length = 1600 Score = 190 bits (96), Expect = 1e-44 Identities = 156/176 (88%) Strand = Plus / Minus Query: 687 gatcaccaaggccagccccgacaaggacgagatgaactgccgcatctgccacctgggcct 746 |||| ||||||||||||| |||| || ||||| ||| ||||||||||||||||| ||||| Sbjct: 1149 gatcgccaaggccagcccggacacggccgagaggaattgccgcatctgccacctcggcct 1090 Query: 747 cgagagcgccgcggccgagtccggcgccggcatcgtgctcggctgctcctgcaaggacga 806 ||| ||||||| |||||||||||| || |||| | ||||||||||||||||||||||| Sbjct: 1089 cgacagcgccgtcgccgagtccggctccagcatgttcctcggctgctcctgcaaggacga 1030 Query: 807 cctctcctgcgcccacaagcagtgcgccgagacctggttcaagatcaggggcaaca 862 ||||||||||||||| ||||| ||||| |||||||||||||| |||||||||||| Sbjct: 1029 cctctcctgcgcccataagcaatgcgctgagacctggttcaaattcaggggcaaca 974
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 190 bits (96), Expect = 1e-44 Identities = 156/176 (88%) Strand = Plus / Minus Query: 687 gatcaccaaggccagccccgacaaggacgagatgaactgccgcatctgccacctgggcct 746 |||| ||||||||||||| |||| || ||||| ||| ||||||||||||||||| ||||| Sbjct: 29365461 gatcgccaaggccagcccggacacggccgagaggaattgccgcatctgccacctcggcct 29365402 Query: 747 cgagagcgccgcggccgagtccggcgccggcatcgtgctcggctgctcctgcaaggacga 806 ||| ||||||| |||||||||||| || |||| | ||||||||||||||||||||||| Sbjct: 29365401 cgacagcgccgtcgccgagtccggctccagcatgttcctcggctgctcctgcaaggacga 29365342 Query: 807 cctctcctgcgcccacaagcagtgcgccgagacctggttcaagatcaggggcaaca 862 ||||||||||||||| ||||| ||||| |||||||||||||| |||||||||||| Sbjct: 29365341 cctctcctgcgcccataagcaatgcgctgagacctggttcaaattcaggggcaaca 29365286
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 190 bits (96), Expect = 1e-44 Identities = 156/176 (88%) Strand = Plus / Plus Query: 687 gatcaccaaggccagccccgacaaggacgagatgaactgccgcatctgccacctgggcct 746 |||| ||||||||||||| |||| | ||||| ||| |||||||||||| |||| ||||| Sbjct: 2609101 gatcgccaaggccagcccggacacgtccgagaggaattgccgcatctgctacctcggcct 2609160 Query: 747 cgagagcgccgcggccgagtccggcgccggcatcgtgctcggctgctcctgcaaggacga 806 ||| |||||||| |||||||||||| ||||||| | |||| |||||||||||||||||| Sbjct: 2609161 cgacagcgccgccgccgagtccggctccggcatgttcctcgactgctcctgcaaggacga 2609220 Query: 807 cctctcctgcgcccacaagcagtgcgccgagacctggttcaagatcaggggcaaca 862 ||||||||||||||| ||||| |||||||||||||||||||| |||||||||||| Sbjct: 2609221 cctctcctgcgcccataagcaatgcgccgagacctggttcaaattcaggggcaaca 2609276
>gb|AC090485.3|AC090485 Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0067N01, from chromosome 3, complete sequence Length = 159636 Score = 190 bits (96), Expect = 1e-44 Identities = 156/176 (88%) Strand = Plus / Minus Query: 687 gatcaccaaggccagccccgacaaggacgagatgaactgccgcatctgccacctgggcct 746 |||| ||||||||||||| |||| | ||||| ||| |||||||||||| |||| ||||| Sbjct: 61103 gatcgccaaggccagcccggacacgtccgagaggaattgccgcatctgctacctcggcct 61044 Query: 747 cgagagcgccgcggccgagtccggcgccggcatcgtgctcggctgctcctgcaaggacga 806 ||| |||||||| |||||||||||| ||||||| | |||| |||||||||||||||||| Sbjct: 61043 cgacagcgccgccgccgagtccggctccggcatgttcctcgactgctcctgcaaggacga 60984 Query: 807 cctctcctgcgcccacaagcagtgcgccgagacctggttcaagatcaggggcaaca 862 ||||||||||||||| ||||| |||||||||||||||||||| |||||||||||| Sbjct: 60983 cctctcctgcgcccataagcaatgcgccgagacctggttcaaattcaggggcaaca 60928
>emb|AL662987.3|OSJN00188 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0088A01, complete sequence Length = 186325 Score = 190 bits (96), Expect = 1e-44 Identities = 156/176 (88%) Strand = Plus / Minus Query: 687 gatcaccaaggccagccccgacaaggacgagatgaactgccgcatctgccacctgggcct 746 |||| ||||||||||||| |||| || ||||| ||| ||||||||||||||||| ||||| Sbjct: 38477 gatcgccaaggccagcccggacacggccgagaggaattgccgcatctgccacctcggcct 38418 Query: 747 cgagagcgccgcggccgagtccggcgccggcatcgtgctcggctgctcctgcaaggacga 806 ||| ||||||| |||||||||||| || |||| | ||||||||||||||||||||||| Sbjct: 38417 cgacagcgccgtcgccgagtccggctccagcatgttcctcggctgctcctgcaaggacga 38358 Query: 807 cctctcctgcgcccacaagcagtgcgccgagacctggttcaagatcaggggcaaca 862 ||||||||||||||| ||||| ||||| |||||||||||||| |||||||||||| Sbjct: 38357 cctctcctgcgcccataagcaatgcgctgagacctggttcaaattcaggggcaaca 38302
>dbj|AK101692.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033059L02, full insert sequence Length = 1603 Score = 190 bits (96), Expect = 1e-44 Identities = 156/176 (88%) Strand = Plus / Minus Query: 687 gatcaccaaggccagccccgacaaggacgagatgaactgccgcatctgccacctgggcct 746 |||| ||||||||||||| |||| || ||||| ||| ||||||||||||||||| ||||| Sbjct: 1150 gatcgccaaggccagcccggacacggccgagaggaattgccgcatctgccacctcggcct 1091 Query: 747 cgagagcgccgcggccgagtccggcgccggcatcgtgctcggctgctcctgcaaggacga 806 ||| ||||||| |||||||||||| || |||| | ||||||||||||||||||||||| Sbjct: 1090 cgacagcgccgtcgccgagtccggctccagcatgttcctcggctgctcctgcaaggacga 1031 Query: 807 cctctcctgcgcccacaagcagtgcgccgagacctggttcaagatcaggggcaaca 862 ||||||||||||||| ||||| ||||| |||||||||||||| |||||||||||| Sbjct: 1030 cctctcctgcgcccataagcaatgcgctgagacctggttcaaattcaggggcaaca 975
>ref|NM_001051348.1| Oryza sativa (japonica cultivar-group) Os01g0850200 (Os01g0850200) mRNA, complete cds Length = 441 Score = 69.9 bits (35), Expect = 2e-08 Identities = 71/83 (85%) Strand = Plus / Plus Query: 863 agatctgcgaagtctgcggctcgacggcgtgcaacgtggttggtttcggcgatgcggagt 922 ||||||||||| |||| ||||| || || ||||| ||||| ||| |||| ||||| |||| Sbjct: 29 agatctgcgaaatctgtggctcaactgcatgcaatgtggtaggtatcggtgatgccgagt 88 Query: 923 tcatggagcagtggaacgaatca 945 |||| ||||||||||| |||||| Sbjct: 89 tcatcgagcagtggaatgaatca 111
>gb|AC189201.1| Brassica rapa subsp. pekinensis clone KBrB005N03, complete sequence Length = 166828 Score = 54.0 bits (27), Expect = 0.001 Identities = 69/83 (83%) Strand = Plus / Plus Query: 991 ttctggcaaggccaccggttcctcaacttcctcctggcctgcatggtgttcgccttcgtc 1050 ||||||||||| ||||||||| | || ||||| | || || ||||| |||||||| || Sbjct: 95351 ttctggcaaggtcaccggttcttgaatttccttttagcttgtatggtcttcgcctttgtg 95410 Query: 1051 atatcctggctcttccacttcaa 1073 || || ||||||||||||||||| Sbjct: 95411 atttcatggctcttccacttcaa 95433
>emb|CT982981.1| partial cDNA sequence from a Lambda ZAP II normalized full-length cDNA library of differentiating xylem from Eucalyptus gunnii Length = 636 Score = 54.0 bits (27), Expect = 0.001 Identities = 39/43 (90%) Strand = Plus / Plus Query: 1030 tgcatggtgttcgccttcgtcatatcctggctcttccacttca 1072 |||||||| || || ||||||||||| |||||||||||||||| Sbjct: 196 tgcatggtatttgcattcgtcatatcatggctcttccacttca 238
>emb|CT982749.1| partial cDNA sequence from a Lambda ZAP II normalized full-length cDNA library of differentiating xylem from Eucalyptus gunnii Length = 792 Score = 48.1 bits (24), Expect = 0.088 Identities = 69/84 (82%) Strand = Plus / Plus Query: 991 ttctggcaaggccaccggttcctcaacttcctcctggcctgcatggtgttcgccttcgtc 1050 |||||||| |||||||| || || ||||| ||||| || |||||||| || || || || Sbjct: 530 ttctggcagggccaccgctttctgaactttctccttgcttgcatggtctttgcttttgtt 589 Query: 1051 atatcctggctcttccacttcaac 1074 || || ||||| |||||||||||| Sbjct: 590 atctcttggctattccacttcaac 613
>gb|AC149371.2| Phakopsora pachyrhizi clone JGIAFNA-53G19, complete sequence Length = 40450 Score = 48.1 bits (24), Expect = 0.088 Identities = 30/32 (93%) Strand = Plus / Plus Query: 994 tggcaaggccaccggttcctcaacttcctcct 1025 ||||||| ||||| |||||||||||||||||| Sbjct: 1227 tggcaagcccaccagttcctcaacttcctcct 1258
>gb|EF056546.1| Brassica rapa clone 543 zinc finger protein mRNA, complete cds Length = 600 Score = 46.1 bits (23), Expect = 0.35 Identities = 68/83 (81%) Strand = Plus / Plus Query: 991 ttctggcaaggccaccggttcctcaacttcctcctggcctgcatggtgttcgccttcgtc 1050 ||||||||||| ||||||||| | || || || | || || ||||| |||||||| || Sbjct: 502 ttctggcaaggtcaccggttcttgaattttcttttagcttgtatggtcttcgcctttgtg 561 Query: 1051 atatcctggctcttccacttcaa 1073 || || ||||||||||||||||| Sbjct: 562 atttcatggctcttccacttcaa 584
>gb|AC130605.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0010D04, complete sequence Length = 122599 Score = 46.1 bits (23), Expect = 0.35 Identities = 23/23 (100%) Strand = Plus / Minus Query: 524 ccgccgcggccgaggaccgcgcc 546 ||||||||||||||||||||||| Sbjct: 77212 ccgccgcggccgaggaccgcgcc 77190
>dbj|AP003197.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1015E06 Length = 164583 Score = 46.1 bits (23), Expect = 0.35 Identities = 23/23 (100%) Strand = Plus / Minus Query: 524 ccgccgcggccgaggaccgcgcc 546 ||||||||||||||||||||||| Sbjct: 126361 ccgccgcggccgaggaccgcgcc 126339
>gb|CP000463.1| Rhodopseudomonas palustris BisA53, complete genome Length = 5505494 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Minus Query: 401 gcgttgccgccggcggcggcgg 422 |||||||||||||||||||||| Sbjct: 4830242 gcgttgccgccggcggcggcgg 4830221
>gb|CP000386.1| Rubrobacter xylanophilus DSM 9941, complete genome Length = 3225748 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Plus Query: 655 gacgtggacctggaggccgggc 676 |||||||||||||||||||||| Sbjct: 361532 gacgtggacctggaggccgggc 361553
>gb|DQ385603.1| Schoenus pauciflorus voucher AK284668 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence Length = 770 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Minus Query: 666 ggaggccgggccggcggccgag 687 |||||||||||||||||||||| Sbjct: 203 ggaggccgggccggcggccgag 182
>gb|DQ385602.1| Schoenus aff. pauciflorus AK284496 voucher AK284496 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence Length = 770 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Minus Query: 666 ggaggccgggccggcggccgag 687 |||||||||||||||||||||| Sbjct: 203 ggaggccgggccggcggccgag 182
>gb|AC011495.8| Homo sapiens chromosome 19 clone CTB-33G10, complete sequence Length = 209844 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Minus Query: 579 tggcgcaggggacggggaaggc 600 |||||||||||||||||||||| Sbjct: 202222 tggcgcaggggacggggaaggc 202201
>gb|AF289221.1| Homo sapiens alpha-adaptin A related protein (AP2A1) gene, complete cds, alternatively spliced Length = 41863 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Minus Query: 579 tggcgcaggggacggggaaggc 600 |||||||||||||||||||||| Sbjct: 10895 tggcgcaggggacggggaaggc 10874
>emb|AL358781.19| Human DNA sequence from clone RP11-334J6 on chromosome 9 Contains the 3' end of the gene for a novel protein (KIAA0515), the RNU62 gene for U62 small nucleolar RNA, a novel gene identical to the RNU62 gene, the POMT1 gene for protein-O-mannosyltransferase 1, a novel gene, the gene for uridine-cytidine kinase 1 (UCK1) and three CpG islands, complete sequence Length = 147492 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1018 ttcctcctggcctgcatggtgt 1039 |||||||||||||||||||||| Sbjct: 31965 ttcctcctggcctgcatggtgt 31986
>dbj|AP002872.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0416D03 Length = 157112 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Plus Query: 401 gcgttgccgccggcggcggcgg 422 |||||||||||||||||||||| Sbjct: 41823 gcgttgccgccggcggcggcgg 41844
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Plus Query: 768 cggcgccggcatcgtgctcggc 789 |||||||||||||||||||||| Sbjct: 3829053 cggcgccggcatcgtgctcggc 3829074
>gb|CP000438.1| Pseudomonas aeruginosa UCBPP-PA14, complete genome Length = 6537648 Score = 42.1 bits (21), Expect = 5.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 406 gccgccggcggcggcggaagg 426 ||||||||||||||||||||| Sbjct: 214036 gccgccggcggcggcggaagg 214016
>ref|NM_001049455.1| Oryza sativa (japonica cultivar-group) Os01g0329000 (Os01g0329000) mRNA, complete cds Length = 1920 Score = 42.1 bits (21), Expect = 5.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 402 cgttgccgccggcggcggcgg 422 ||||||||||||||||||||| Sbjct: 1043 cgttgccgccggcggcggcgg 1063
>gb|DQ680161.1| Oryctolagus cuniculus IL-6 mRNA, complete cds Length = 726 Score = 42.1 bits (21), Expect = 5.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 690 caccaaggccagccccgacaa 710 ||||||||||||||||||||| Sbjct: 114 caccaaggccagccccgacaa 134
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 42.1 bits (21), Expect = 5.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 753 cgccgcggccgagtccggcgccggc 777 ||||||||||| ||||||||||||| Sbjct: 2555914 cgccgcggccgggtccggcgccggc 2555938
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 42.1 bits (21), Expect = 5.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 765 gtccggcgccggcatcgtgct 785 ||||||||||||||||||||| Sbjct: 2167867 gtccggcgccggcatcgtgct 2167887
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 42.1 bits (21), Expect = 5.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 759 ggccgagtccggcgccggcatcgtgctcg 787 ||||||| |||||||||||||||||||| Sbjct: 1672347 ggccgagcgcggcgccggcatcgtgctcg 1672375
>gb|DQ203855.1| Burkholderia cepacia phage Bcep176, complete genome Length = 44856 Score = 42.1 bits (21), Expect = 5.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 400 cgcgttgccgccggcggcggc 420 ||||||||||||||||||||| Sbjct: 32516 cgcgttgccgccggcggcggc 32536
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 42.1 bits (21), Expect = 5.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 375 agccgagcctgacctggagcg 395 ||||||||||||||||||||| Sbjct: 574472 agccgagcctgacctggagcg 574452
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 42.1 bits (21), Expect = 5.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 604 gccgcggccgggcgcgagcgg 624 ||||||||||||||||||||| Sbjct: 1531109 gccgcggccgggcgcgagcgg 1531129
>gb|AC153020.5| Mus musculus BAC clone RP23-88P1 from chromosome 13, complete sequence Length = 200635 Score = 42.1 bits (21), Expect = 5.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1125 gaagccattgctgctggcaga 1145 ||||||||||||||||||||| Sbjct: 90805 gaagccattgctgctggcaga 90825
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 5.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 953 cggcaggccctcaagcgccgg 973 ||||||||||||||||||||| Sbjct: 7396227 cggcaggccctcaagcgccgg 7396247
>emb|AL929087.4| Zebrafish DNA sequence from clone CH211-226M16 in linkage group 23 Contains three novel genes and a CpG island, complete sequence Length = 205160 Score = 42.1 bits (21), Expect = 5.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1371 tggcttaaattaaatattgtt 1391 ||||||||||||||||||||| Sbjct: 98043 tggcttaaattaaatattgtt 98023
>dbj|AP002869.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0554D10 Length = 158723 Score = 42.1 bits (21), Expect = 5.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 402 cgttgccgccggcggcggcgg 422 ||||||||||||||||||||| Sbjct: 27906 cgttgccgccggcggcggcgg 27886
>gb|AF169176.1|AF169176 Oryctolagus cuniculus interleukin 6 (IL-6) mRNA, complete cds Length = 1135 Score = 42.1 bits (21), Expect = 5.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 690 caccaaggccagccccgacaa 710 ||||||||||||||||||||| Sbjct: 168 caccaaggccagccccgacaa 188
>dbj|AK071961.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013077G18, full insert sequence Length = 1921 Score = 42.1 bits (21), Expect = 5.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 402 cgttgccgccggcggcggcgg 422 ||||||||||||||||||||| Sbjct: 1044 cgttgccgccggcggcggcgg 1064
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 42.1 bits (21), Expect = 5.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 375 agccgagcctgacctggagcg 395 ||||||||||||||||||||| Sbjct: 586595 agccgagcctgacctggagcg 586575
>emb|AL663041.6| Mouse DNA sequence from clone RP23-342H16 on chromosome 11, complete sequence Length = 167123 Score = 42.1 bits (21), Expect = 5.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1223 tgaagtggaggtgaaatattt 1243 ||||||||||||||||||||| Sbjct: 104785 tgaagtggaggtgaaatattt 104805 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 205,680,321 Number of extensions: 12651407 Number of successful extensions: 250473 Number of sequences better than 10.0: 51 Number of HSP's gapped: 250463 Number of HSP's successfully gapped: 71 Length of query: 1427 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1404 Effective length of database: 18,503,978,556 Effective search space: 25979585892624 Effective search space used: 25979585892624 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
