ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | FLbaf127a16 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001073959.1| Oryza sativa (japonica cultivar-group) Os11g0195800 (Os11g0195800) mRNA, complete cds Length = 1186 Score = 115 bits (58), Expect = 3e-22 Identities = 115/134 (85%) Strand = Plus / Plus Query: 668 gagtacctgccgtcgttcagccacgcgctaagcctcggcgaaatcgacgacgacctacta 727 ||||||||||||||||||||||||||| | ||||||||||| | ||||||| | || Sbjct: 756 gagtacctgccgtcgttcagccacgcgttgagcctcggcgaggtggacgacggcgagctg 815 Query: 728 ggcggcaggagaaggaaggcgcagaaggtgaagcccatcgtgccactcatcagagacatc 787 | ||| ||||| ||||||||| ||||||||||||||||||||| |||||| | |||||| Sbjct: 816 gtcgggaggaggaggaaggcgaggaaggtgaagcccatcgtgcctctcatcggcgacatc 875 Query: 788 ctcttctccaagag 801 ||||||||||||| Sbjct: 876 atcttctccaagag 889 Score = 103 bits (52), Expect = 1e-18 Identities = 121/144 (84%) Strand = Plus / Plus Query: 414 tcaaaaagctggaagcggaggtggccgatacgagacgggaggtgctgcagctcaggaaga 473 |||| |||||||| ||||||||||| || ||||| | ||||||| |||||| | |||| Sbjct: 478 tcaagaagctggaggcggaggtggcggagacgaggcaggaggtggcgcagctgaagaagc 537 Query: 474 ggggcaccgagatggagatagccgtggccagcctcaacgcgcagctccaccgaggcctgt 533 |||| | |||||||||||| |||||||| |||||||||||||||||||| ||||| | Sbjct: 538 gggggagcgagatggagatggccgtggcgtcgctcaacgcgcagctccaccgcggcctct 597 Query: 534 cgaggctggccgagattgaggccg 557 ||| |||||| ||||| ||||||| Sbjct: 598 cgaagctggcggagatggaggccg 621 Score = 87.7 bits (44), Expect = 7e-14 Identities = 80/92 (86%) Strand = Plus / Plus Query: 30 ccatggcctctgatcgtgtcgaggttgacaccgcccgccctttccggtccgtgaaggagg 89 |||||||| | || ||||||||||| ||||| || ||||||||||||||||| | ||||| Sbjct: 82 ccatggccaccgaccgtgtcgaggtcgacacggcacgccctttccggtccgtcagggagg 141 Query: 90 ctgtcgcggtgttcggggagcgcatcctcgtc 121 | ||||| || ||||| ||||||||||||||| Sbjct: 142 ccgtcgccgtcttcggcgagcgcatcctcgtc 173 Score = 48.1 bits (24), Expect = 0.065 Identities = 27/28 (96%) Strand = Plus / Plus Query: 803 ttctccaagaggaagagcagcaaggaca 830 ||||||||||||||||||| |||||||| Sbjct: 879 ttctccaagaggaagagcaccaaggaca 906
>gb|AC145322.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0096N19, complete sequence Length = 178671 Score = 115 bits (58), Expect = 3e-22 Identities = 115/134 (85%) Strand = Plus / Plus Query: 668 gagtacctgccgtcgttcagccacgcgctaagcctcggcgaaatcgacgacgacctacta 727 ||||||||||||||||||||||||||| | ||||||||||| | ||||||| | || Sbjct: 53504 gagtacctgccgtcgttcagccacgcgttgagcctcggcgaggtggacgacggcgagctg 53563 Query: 728 ggcggcaggagaaggaaggcgcagaaggtgaagcccatcgtgccactcatcagagacatc 787 | ||| ||||| ||||||||| ||||||||||||||||||||| |||||| | |||||| Sbjct: 53564 gtcgggaggaggaggaaggcgaggaaggtgaagcccatcgtgcctctcatcggcgacatc 53623 Query: 788 ctcttctccaagag 801 ||||||||||||| Sbjct: 53624 atcttctccaagag 53637 Score = 103 bits (52), Expect = 1e-18 Identities = 121/144 (84%) Strand = Plus / Plus Query: 414 tcaaaaagctggaagcggaggtggccgatacgagacgggaggtgctgcagctcaggaaga 473 |||| |||||||| ||||||||||| || ||||| | ||||||| |||||| | |||| Sbjct: 53226 tcaagaagctggaggcggaggtggcggagacgaggcaggaggtggcgcagctgaagaagc 53285 Query: 474 ggggcaccgagatggagatagccgtggccagcctcaacgcgcagctccaccgaggcctgt 533 |||| | |||||||||||| |||||||| |||||||||||||||||||| ||||| | Sbjct: 53286 gggggagcgagatggagatggccgtggcgtcgctcaacgcgcagctccaccgcggcctct 53345 Query: 534 cgaggctggccgagattgaggccg 557 ||| |||||| ||||| ||||||| Sbjct: 53346 cgaagctggcggagatggaggccg 53369 Score = 87.7 bits (44), Expect = 7e-14 Identities = 80/92 (86%) Strand = Plus / Plus Query: 30 ccatggcctctgatcgtgtcgaggttgacaccgcccgccctttccggtccgtgaaggagg 89 |||||||| | || ||||||||||| ||||| || ||||||||||||||||| | ||||| Sbjct: 52830 ccatggccaccgaccgtgtcgaggtcgacacggcacgccctttccggtccgtcagggagg 52889 Query: 90 ctgtcgcggtgttcggggagcgcatcctcgtc 121 | ||||| || ||||| ||||||||||||||| Sbjct: 52890 ccgtcgccgtcttcggcgagcgcatcctcgtc 52921 Score = 48.1 bits (24), Expect = 0.065 Identities = 27/28 (96%) Strand = Plus / Plus Query: 803 ttctccaagaggaagagcagcaaggaca 830 ||||||||||||||||||| |||||||| Sbjct: 53627 ttctccaagaggaagagcaccaaggaca 53654
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11 Length = 28386948 Score = 115 bits (58), Expect = 3e-22 Identities = 115/134 (85%) Strand = Plus / Minus Query: 668 gagtacctgccgtcgttcagccacgcgctaagcctcggcgaaatcgacgacgacctacta 727 ||||||||||||||||||||||||||| | ||||||||||| | ||||||| | || Sbjct: 4778170 gagtacctgccgtcgttcagccacgcgttgagcctcggcgaggtggacgacggcgagctg 4778111 Query: 728 ggcggcaggagaaggaaggcgcagaaggtgaagcccatcgtgccactcatcagagacatc 787 | ||| ||||| ||||||||| ||||||||||||||||||||| |||||| | |||||| Sbjct: 4778110 gtcgggaggaggaggaaggcgaggaaggtgaagcccatcgtgcctctcatcggcgacatc 4778051 Query: 788 ctcttctccaagag 801 ||||||||||||| Sbjct: 4778050 atcttctccaagag 4778037 Score = 103 bits (52), Expect = 1e-18 Identities = 121/144 (84%) Strand = Plus / Minus Query: 414 tcaaaaagctggaagcggaggtggccgatacgagacgggaggtgctgcagctcaggaaga 473 |||| |||||||| ||||||||||| || ||||| | ||||||| |||||| | |||| Sbjct: 4778448 tcaagaagctggaggcggaggtggcggagacgaggcaggaggtggcgcagctgaagaagc 4778389 Query: 474 ggggcaccgagatggagatagccgtggccagcctcaacgcgcagctccaccgaggcctgt 533 |||| | |||||||||||| |||||||| |||||||||||||||||||| ||||| | Sbjct: 4778388 gggggagcgagatggagatggccgtggcgtcgctcaacgcgcagctccaccgcggcctct 4778329 Query: 534 cgaggctggccgagattgaggccg 557 ||| |||||| ||||| ||||||| Sbjct: 4778328 cgaagctggcggagatggaggccg 4778305 Score = 87.7 bits (44), Expect = 7e-14 Identities = 80/92 (86%) Strand = Plus / Minus Query: 30 ccatggcctctgatcgtgtcgaggttgacaccgcccgccctttccggtccgtgaaggagg 89 |||||||| | || ||||||||||| ||||| || ||||||||||||||||| | ||||| Sbjct: 4778844 ccatggccaccgaccgtgtcgaggtcgacacggcacgccctttccggtccgtcagggagg 4778785 Query: 90 ctgtcgcggtgttcggggagcgcatcctcgtc 121 | ||||| || ||||| ||||||||||||||| Sbjct: 4778784 ccgtcgccgtcttcggcgagcgcatcctcgtc 4778753 Score = 48.1 bits (24), Expect = 0.065 Identities = 27/28 (96%) Strand = Plus / Minus Query: 803 ttctccaagaggaagagcagcaaggaca 830 ||||||||||||||||||| |||||||| Sbjct: 4778047 ttctccaagaggaagagcaccaaggaca 4778020
>dbj|AK061281.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-F07, full insert sequence Length = 1186 Score = 115 bits (58), Expect = 3e-22 Identities = 115/134 (85%) Strand = Plus / Plus Query: 668 gagtacctgccgtcgttcagccacgcgctaagcctcggcgaaatcgacgacgacctacta 727 ||||||||||||||||||||||||||| | ||||||||||| | ||||||| | || Sbjct: 756 gagtacctgccgtcgttcagccacgcgttgagcctcggcgaggtggacgacggcgagctg 815 Query: 728 ggcggcaggagaaggaaggcgcagaaggtgaagcccatcgtgccactcatcagagacatc 787 | ||| ||||| ||||||||| ||||||||||||||||||||| |||||| | |||||| Sbjct: 816 gtcgggaggaggaggaaggcgaggaaggtgaagcccatcgtgcctctcatcggcgacatc 875 Query: 788 ctcttctccaagag 801 ||||||||||||| Sbjct: 876 atcttctccaagag 889 Score = 103 bits (52), Expect = 1e-18 Identities = 121/144 (84%) Strand = Plus / Plus Query: 414 tcaaaaagctggaagcggaggtggccgatacgagacgggaggtgctgcagctcaggaaga 473 |||| |||||||| ||||||||||| || ||||| | ||||||| |||||| | |||| Sbjct: 478 tcaagaagctggaggcggaggtggcggagacgaggcaggaggtggcgcagctgaagaagc 537 Query: 474 ggggcaccgagatggagatagccgtggccagcctcaacgcgcagctccaccgaggcctgt 533 |||| | |||||||||||| |||||||| |||||||||||||||||||| ||||| | Sbjct: 538 gggggagcgagatggagatggccgtggcgtcgctcaacgcgcagctccaccgcggcctct 597 Query: 534 cgaggctggccgagattgaggccg 557 ||| |||||| ||||| ||||||| Sbjct: 598 cgaagctggcggagatggaggccg 621 Score = 87.7 bits (44), Expect = 7e-14 Identities = 80/92 (86%) Strand = Plus / Plus Query: 30 ccatggcctctgatcgtgtcgaggttgacaccgcccgccctttccggtccgtgaaggagg 89 |||||||| | || ||||||||||| ||||| || ||||||||||||||||| | ||||| Sbjct: 82 ccatggccaccgaccgtgtcgaggtcgacacggcacgccctttccggtccgtcagggagg 141 Query: 90 ctgtcgcggtgttcggggagcgcatcctcgtc 121 | ||||| || ||||| ||||||||||||||| Sbjct: 142 ccgtcgccgtcttcggcgagcgcatcctcgtc 173 Score = 48.1 bits (24), Expect = 0.065 Identities = 27/28 (96%) Strand = Plus / Plus Query: 803 ttctccaagaggaagagcagcaaggaca 830 ||||||||||||||||||| |||||||| Sbjct: 879 ttctccaagaggaagagcaccaaggaca 906
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12 Length = 27566993 Score = 71.9 bits (36), Expect = 4e-09 Identities = 63/72 (87%) Strand = Plus / Minus Query: 50 gaggttgacaccgcccgccctttccggtccgtgaaggaggctgtcgcggtgttcggggag 109 ||||| |||||| || || | |||||||| ||||||||||| ||||| |||||||| ||| Sbjct: 4170378 gaggtcgacacctccagcgcgttccggtcggtgaaggaggcggtcgccgtgttcggcgag 4170319 Query: 110 cgcatcctcgtc 121 |||||||||||| Sbjct: 4170318 cgcatcctcgtc 4170307 Score = 46.1 bits (23), Expect = 0.25 Identities = 32/35 (91%) Strand = Plus / Minus Query: 740 aggaaggcgcagaaggtgaagcccatcgtgccact 774 ||||||| |||||||| |||||| ||||||||||| Sbjct: 4169566 aggaaggtgcagaaggagaagccgatcgtgccact 4169532
>emb|AL928748.4|CNS08CBL Oryza sativa chromosome 12, . BAC OSJNBb0092O07 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 123469 Score = 71.9 bits (36), Expect = 4e-09 Identities = 63/72 (87%) Strand = Plus / Minus Query: 50 gaggttgacaccgcccgccctttccggtccgtgaaggaggctgtcgcggtgttcggggag 109 ||||| |||||| || || | |||||||| ||||||||||| ||||| |||||||| ||| Sbjct: 112774 gaggtcgacacctccagcgcgttccggtcggtgaaggaggcggtcgccgtgttcggcgag 112715 Query: 110 cgcatcctcgtc 121 |||||||||||| Sbjct: 112714 cgcatcctcgtc 112703 Score = 46.1 bits (23), Expect = 0.25 Identities = 32/35 (91%) Strand = Plus / Minus Query: 740 aggaaggcgcagaaggtgaagcccatcgtgccact 774 ||||||| |||||||| |||||| ||||||||||| Sbjct: 111962 aggaaggtgcagaaggagaagccgatcgtgccact 111928
>ref|XM_001060895.1| PREDICTED: Rattus norvegicus zinc and ring finger 1 (predicted) (Znrf1_predicted), mRNA Length = 1211 Score = 48.1 bits (24), Expect = 0.065 Identities = 24/24 (100%) Strand = Plus / Plus Query: 563 gctgcggcggcggcacggcacagc 586 |||||||||||||||||||||||| Sbjct: 184 gctgcggcggcggcacggcacagc 207
>gb|AY071431.1| Drosophila melanogaster RE52028 full length cDNA Length = 1438 Score = 44.1 bits (22), Expect = 1.0 Identities = 28/30 (93%) Strand = Plus / Plus Query: 439 cgatacgagacgggaggtgctgcagctcag 468 ||||||||| ||||||||||||| |||||| Sbjct: 997 cgatacgaggcgggaggtgctgctgctcag 1026
>gb|AF079236.1|AF079236 Arundinella hirta granule-bound starch synthase (waxy) gene, partial cds Length = 1185 Score = 44.1 bits (22), Expect = 1.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 600 ccgacgtgatggcggcggccat 621 |||||||||||||||||||||| Sbjct: 341 ccgacgtgatggcggcggccat 362
>gb|AC167980.3| Mus musculus BAC clone RP23-28M3 from chromosome 9, complete sequence Length = 221078 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 769 gccactcatcagagacatcct 789 ||||||||||||||||||||| Sbjct: 178038 gccactcatcagagacatcct 178058
>gb|CP000362.1| Roseobacter denitrificans OCh 114, complete genome Length = 4133097 Score = 42.1 bits (21), Expect = 4.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 540 tggccgagattgaggccgacaaggc 564 |||||||||||||| |||||||||| Sbjct: 2887946 tggccgagattgagaccgacaaggc 2887970
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 610 ggcggcggccatggtgcggag 630 ||||||||||||||||||||| Sbjct: 2322945 ggcggcggccatggtgcggag 2322925
>gb|CP000097.1| Synechococcus sp. CC9902, complete genome Length = 2234828 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 404 gtgagctccatcaaaaagctg 424 ||||||||||||||||||||| Sbjct: 2193040 gtgagctccatcaaaaagctg 2193060
>gb|AC117630.11| Mus musculus chromosome 9, clone RP23-181A16, complete sequence Length = 245165 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 769 gccactcatcagagacatcct 789 ||||||||||||||||||||| Sbjct: 153609 gccactcatcagagacatcct 153589
>ref|NM_172922.1| Mus musculus ankyrin repeat and kinase domain containing 1 (Ankk1), mRNA dbj|AK036872.1| Mus musculus adult female vagina cDNA, RIKEN full-length enriched library, clone:9930020N01 product:hypothetical Tyrosine protein kinase/Ankyrin repeat profile/Serine/Threonine protein kinase/Eukaryotic protein kinase/Ankyrin-repeat/Ankyrin repeat region circular profile/Yeast DNA-binding domain containing protein, full insert sequence Length = 2687 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 769 gccactcatcagagacatcct 789 ||||||||||||||||||||| Sbjct: 827 gccactcatcagagacatcct 807
>gb|AC135977.5| Homo sapiens chromosome 11, clone RP11-61N20, complete sequence Length = 152868 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 7 aaatccttgaagaagtggaat 27 ||||||||||||||||||||| Sbjct: 112923 aaatccttgaagaagtggaat 112903
>gb|AC118942.4| Homo sapiens chromosome 11, clone RP11-15P23, complete sequence Length = 161527 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 7 aaatccttgaagaagtggaat 27 ||||||||||||||||||||| Sbjct: 24515 aaatccttgaagaagtggaat 24495 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 148,863,027 Number of extensions: 8501522 Number of successful extensions: 192479 Number of sequences better than 10.0: 17 Number of HSP's gapped: 192471 Number of HSP's successfully gapped: 31 Length of query: 1053 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1030 Effective length of database: 18,503,978,556 Effective search space: 19059097912680 Effective search space used: 19059097912680 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
