ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf120b01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DQ175909.1| Hordeum vulgare subsp. vulgare clone 29-16A-LB fl... 92 2e-14
2gb|AC136905.6| Oryza sativa (japonica cultivar-group) chromosome... 52 0.014
3dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.014
4dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.21
5dbj|AP003022.2| Oryza sativa (japonica cultivar-group) genomic D... 48 0.21
6gb|AC113100.12| Mus musculus chromosome 1, clone RP23-317I17, co... 46 0.84
7emb|AL445256.18| Human DNA sequence from clone RP11-167K24 on ch... 46 0.84
8dbj|AP003330.4| Oryza sativa (japonica cultivar-group) genomic D... 46 0.84
9emb|CR925677.1| Ehrlichia ruminantium str. Gardel, complete genome 46 0.84
10gb|AC188455.2| Mus musculus BAC clone RP23-248O14 from chromosom... 44 3.3
11gb|AE014134.5| Drosophila melanogaster chromosome 2L, complete s... 44 3.3
12gb|AY534123.1|SEG_AY534122S2 Aegilops tauschii transposons Caspa... 44 3.3
13gb|AC120889.3| Oryza sativa (japonica cultivar-group) chromosome... 44 3.3
14gb|AC007083.11|AC007083 Drosophila melanogaster, chromosome 2L, ... 44 3.3
15emb|AL732435.17| Mouse DNA sequence from clone RP23-48L13 on chr... 44 3.3
16gb|AC119928.8| Mus musculus chromosome 1, clone RP24-259F2, comp... 44 3.3
17gb|AF166121.1|AF166121 Hordeum vulgare Cf2/Cf5 disease resistanc... 44 3.3
18gb|AC151272.2| Mus musculus BAC clone RP24-208G22 from 17, compl... 44 3.3 
>gb|DQ175909.1| Hordeum vulgare subsp. vulgare clone 29-16A-LB flanking T-DNA
            insertion sequence
          Length = 508
 Score = 91.7 bits (46), Expect = 2e-14
 Identities = 55/58 (94%)
 Strand = Plus / Plus

                                                                      
Query: 3293 atgggtccccttcaataaattccacgcggcctctccccagaggttacaacgctttacc 3350
            |||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||
Sbjct: 1    atgggtccccttcaataaataccacgcggcctctctcgagaggttacaacgctttacc 58
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>gb|AC136905.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0064E13, complete sequence
          Length = 150158

 Score = 52.0 bits (26), Expect = 0.014
 Identities = 41/46 (89%)
 Strand = Plus / Plus

                                                           
Query: 2527  gagtctcttgatctctcaaagaaccagctttctggtgaaattcctt 2572
             ||||| |||||||||||| ||||| ||||||| |||||||| ||||
Sbjct: 74858 gagtcgcttgatctctcagagaacaagctttcaggtgaaatccctt 74903
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11
          Length = 28386948

 Score = 52.0 bits (26), Expect = 0.014
 Identities = 41/46 (89%)
 Strand = Plus / Plus

                                                              
Query: 2527     gagtctcttgatctctcaaagaaccagctttctggtgaaattcctt 2572
                ||||| |||||||||||| ||||| ||||||| |||||||| ||||
Sbjct: 20063725 gagtcgcttgatctctcagagaacaagctttcaggtgaaatccctt 20063770



 Score = 44.1 bits (22), Expect = 3.3
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                              
Query: 495      tggtagagtgcctcctcagctaggcaacct 524
                ||||||||||||||||||||| || |||||
Sbjct: 20177746 tggtagagtgcctcctcagcttggtaacct 20177775
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1
          Length = 43261740

 Score = 48.1 bits (24), Expect = 0.21
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                            
Query: 2527     gagtctcttgatctctcaaagaaccagctttctggtgaaattcc 2570
                |||||||| ||||||||| | || || |||||||||||||||||
Sbjct: 23787989 gagtctctagatctctcacacaatcaactttctggtgaaattcc 23788032



 Score = 46.1 bits (23), Expect = 0.84
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                   
Query: 251      ggacaggccacgtcgtcaagctcgacctccacaac 285
                |||| ||||| ||||||||||||||||||| ||||
Sbjct: 23784309 ggaccggccatgtcgtcaagctcgacctccgcaac 23784343



 Score = 44.1 bits (22), Expect = 3.3
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                              
Query: 1954     aacaatagtctttcaggtggattcccttca 1983
                |||||||||||||| |||| ||||||||||
Sbjct: 23787413 aacaatagtctttccggtgaattcccttca 23787442
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>dbj|AP003022.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0681B11
          Length = 144091

 Score = 48.1 bits (24), Expect = 0.21
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                         
Query: 2527  gagtctcttgatctctcaaagaaccagctttctggtgaaattcc 2570
             |||||||| ||||||||| | || || |||||||||||||||||
Sbjct: 68574 gagtctctagatctctcacacaatcaactttctggtgaaattcc 68617



 Score = 46.1 bits (23), Expect = 0.84
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                
Query: 251   ggacaggccacgtcgtcaagctcgacctccacaac 285
             |||| ||||| ||||||||||||||||||| ||||
Sbjct: 64894 ggaccggccatgtcgtcaagctcgacctccgcaac 64928



 Score = 44.1 bits (22), Expect = 3.3
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 1954  aacaatagtctttcaggtggattcccttca 1983
             |||||||||||||| |||| ||||||||||
Sbjct: 67998 aacaatagtctttccggtgaattcccttca 68027
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>gb|AC113100.12| Mus musculus chromosome 1, clone RP23-317I17, complete sequence
          Length = 199991

 Score = 46.1 bits (23), Expect = 0.84
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 2861   gccttgtgttcatgaagaaatgg 2883
              |||||||||||||||||||||||
Sbjct: 111375 gccttgtgttcatgaagaaatgg 111353
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>emb|AL445256.18| Human DNA sequence from clone RP11-167K24 on chromosome 6 Contains part
             of the RAB3IP2 gene for RAB3 interacting protein 2,
             complete sequence
          Length = 66683

 Score = 46.1 bits (23), Expect = 0.84
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                            
Query: 3211  ttgggtgtttattaagtttagtaaccaactt 3241
             |||||||||||||||||||| ||||| ||||
Sbjct: 11871 ttgggtgtttattaagtttaataacctactt 11901
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>dbj|AP003330.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1085F01
          Length = 163671

 Score = 46.1 bits (23), Expect = 0.84
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                 
Query: 251    ggacaggccacgtcgtcaagctcgacctccacaac 285
              |||| ||||| ||||||||||||||||||| ||||
Sbjct: 162013 ggaccggccatgtcgtcaagctcgacctccgcaac 162047
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>emb|CR925677.1| Ehrlichia ruminantium str. Gardel, complete genome
          Length = 1499920

 Score = 46.1 bits (23), Expect = 0.84
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 3019   acttaatagtatacatattaatt 3041
              |||||||||||||||||||||||
Sbjct: 722243 acttaatagtatacatattaatt 722265
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>gb|AC188455.2| Mus musculus BAC clone RP23-248O14 from chromosome 17, complete
             sequence
          Length = 208662

 Score = 44.1 bits (22), Expect = 3.3
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 2532  tcttgatctctcaaagaaccagcttt 2557
             ||||| ||||||||||||||||||||
Sbjct: 18669 tcttgttctctcaaagaaccagcttt 18694
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>gb|AE014134.5| Drosophila melanogaster chromosome 2L, complete sequence
          Length = 23011544

 Score = 44.1 bits (22), Expect = 3.3
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 1344     catcgtggattcggattgggaa 1365
                ||||||||||||||||||||||
Sbjct: 11415353 catcgtggattcggattgggaa 11415332
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>gb|AY534123.1|SEG_AY534122S2 Aegilops tauschii transposons Caspar, XJ, Angela, and XJ, complete
             sequence; LRR protein WM1.7 (WM1.7) and LRR protein WM1.12
             (WM1.12) genes, complete cds; transposons Ophelia2,
             Angela3s, and XJ3, complete sequence; LRR protein WM1.3
             (WM1.3) gene, complete cds; Stowaway MITE, transposons
             XJ1, Jody, Angela, and XJ and Stowaway MITE, complete
             sequence; LRR protein WM1.2 (WM1.2) and LLR protein WM1.1
             (WM1.1) genes, complete cds; transposons XJ, XA, Angela,
             and Fred and WM1.11 gene, complete sequence; RPM1-like
             sequence and LRR protein WM1.10 (WM1.10) genes, complete
             cds; and transposon XJ, complete sequence
          Length = 198649

 Score = 44.1 bits (22), Expect = 3.3
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                   
Query: 2530  tctcttgatctctcaaagaaccagctttctggtgaaat 2567
             |||||||| |||||  ||||| ||||||||||||||||
Sbjct: 40184 tctcttgacctctctcagaacaagctttctggtgaaat 40221
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>gb|AC120889.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0018K14, complete sequence
          Length = 152725

 Score = 44.1 bits (22), Expect = 3.3
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 495   tggtagagtgcctcctcagctaggcaacct 524
             ||||||||||||||||||||| || |||||
Sbjct: 97105 tggtagagtgcctcctcagcttggtaacct 97134
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>gb|AC007083.11|AC007083 Drosophila melanogaster, chromosome 2L, region 33A-, BAC clone BACR43K24,
              complete sequence
          Length = 188067

 Score = 44.1 bits (22), Expect = 3.3
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 1344   catcgtggattcggattgggaa 1365
              ||||||||||||||||||||||
Sbjct: 153380 catcgtggattcggattgggaa 153359
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>emb|AL732435.17| Mouse DNA sequence from clone RP23-48L13 on chromosome X, complete
            sequence
          Length = 127212

 Score = 44.1 bits (22), Expect = 3.3
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 877  caattagggggaacttttcctc 898
            ||||||||||||||||||||||
Sbjct: 7940 caattagggggaacttttcctc 7961
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>gb|AC119928.8| Mus musculus chromosome 1, clone RP24-259F2, complete sequence
          Length = 174419

 Score = 44.1 bits (22), Expect = 3.3
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 2019   cctatctcaaaataaattgagt 2040
              ||||||||||||||||||||||
Sbjct: 104175 cctatctcaaaataaattgagt 104196
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>gb|AF166121.1|AF166121 Hordeum vulgare Cf2/Cf5 disease resistance protein homolog (Big1)
            gene, complete cds
          Length = 7351

 Score = 44.1 bits (22), Expect = 3.3
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 503  tgcctcctcagctaggcaacct 524
            ||||||||||||||||||||||
Sbjct: 3317 tgcctcctcagctaggcaacct 3338
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>gb|AC151272.2| Mus musculus BAC clone RP24-208G22 from 17, complete sequence
          Length = 148109

 Score = 44.1 bits (22), Expect = 3.3
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 2532  tcttgatctctcaaagaaccagcttt 2557
             ||||| ||||||||||||||||||||
Sbjct: 87200 tcttgttctctcaaagaaccagcttt 87225


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 621,267,724
Number of extensions: 31149625
Number of successful extensions: 171843
Number of sequences better than 10.0: 18
Number of HSP's gapped: 171843
Number of HSP's successfully gapped: 23
Length of query: 3434
Length of database: 18,610,659,111
Length adjustment: 24
Effective length of query: 3410
Effective length of database: 18,499,340,271
Effective search space: 63082750324110
Effective search space used: 63082750324110
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 15 (30.2 bits)
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