ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf83k11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1P53091:MCM6_YEAST DNA replication licensing factor MCM6 - Saccha... 32 2.2
2P56095:AP1_KLULA AP-1-like transcription factor - Kluyveromyces ... 32 2.2
3Q8K572:HUS1B_MOUSE Checkpoint protein HUS1B - Mus musculus (Mouse) 30 8.2

>P53091:MCM6_YEAST DNA replication licensing factor MCM6 - Saccharomyces cerevisiae|
            (Baker's yeast)
          Length = 1017
 Score = 32.3 bits (72), Expect = 2.2
 Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
 Frame = +2

Query: 434  ISSLNLL-RVISEQEGVAIEELNAGRVCDWFLKDKLKQEQNLGTAVLQWDD 583
            +S +N++ R I+E +    EEL A  + DW+L   L++E +LG+    W++
Sbjct: 910  VSMMNMIVRKIAEVDREGAEELTAVDIVDWYL---LQKENDLGSLAEYWEE 957



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>P56095:AP1_KLULA AP-1-like transcription factor - Kluyveromyces lactis (Yeast)|
           (Candida sphaerica)
          Length = 583

 Score = 32.3 bits (72), Expect = 2.2
 Identities = 18/62 (29%), Positives = 36/62 (58%)
 Frame = -3

Query: 564 AVPRFCSCLSLSLRNQSHTRPALSSSIATPSCSDITRSRFSDDMVRRQRKRSWVLSPDIS 385
           +V  FCS LS++   +S+  P  +S ++TPS SD+ + + + ++       + + S D+S
Sbjct: 260 SVSSFCSKLSMACGTKSNPIPK-ASPVSTPSSSDLLKPKSNSNVNITNHNNNKINSKDLS 318

Query: 384 TS 379
           +S
Sbjct: 319 SS 320



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>Q8K572:HUS1B_MOUSE Checkpoint protein HUS1B - Mus musculus (Mouse)|
          Length = 276

 Score = 30.4 bits (67), Expect = 8.2
 Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 8/85 (9%)
 Frame = -3

Query: 582 SSHCRTAVPRFCSCLSLSLRNQSHTRPALSSSIATPSCSDITRSRFSDDMVRRQRKRSW- 406
           S H   AV    +  SL L+  +  RP L+  +   SC   TR+   D  VR   +R W 
Sbjct: 82  SEHLARAVKNAGNASSLKLQLTNKQRPCLTLVVELASCPGHTRAVVHDLPVRVLPRRRWK 141

Query: 405 ------VLSPDIST-SPASSRLRNV 352
                 V   D+S   PA   L+N+
Sbjct: 142 DCTEPHVRGSDVSVYLPALKTLKNM 166


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 103,999,343
Number of extensions: 1848375
Number of successful extensions: 4550
Number of sequences better than 10.0: 3
Number of HSP's gapped: 4546
Number of HSP's successfully gapped: 3
Length of query: 262
Length of database: 100,686,439
Length adjustment: 111
Effective length of query: 151
Effective length of database: 70,239,694
Effective search space: 10606193794
Effective search space used: 10606193794
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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