ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf77i16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1P37370:VRP1_YEAST Verprolin - Saccharomyces cerevisiae (Baker's ... 36 1.0
2O46392:CO1A2_CANFA Collagen alpha-2(I) chain precursor - Canis f... 34 3.0
3P08123:CO1A2_HUMAN Collagen alpha-2(I) chain precursor - Homo sa... 33 6.7
4Q5TM26:BAT2_MACMU Large proline-rich protein BAT2 - Macaca mulat... 33 6.7
5Q05859:FMN1B_MOUSE Formin-1, isoform IV - Mus musculus (Mouse) 33 8.7
6Q05860:FMN1A_MOUSE Formin-1, isoforms I/II/III - Mus musculus (M... 33 8.7
7Q86T65:DAAM2_HUMAN Disheveled-associated activator of morphogene... 33 8.7
8P37697:CCPA_ACEXY Cellulose-complementing protein - Acetobacter ... 33 8.7

>P37370:VRP1_YEAST Verprolin - Saccharomyces cerevisiae (Baker's yeast)|
          Length = 817
 Score = 35.8 bits (81), Expect = 1.0
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
 Frame = -3

Query: 1489 APTSPSMGSNYAACYMGVPLPLGPR----PETPMPPDRMTGFSSAPQIPSSRPH 1340
            AP  PS+ S+ A     +P    P     P +P PP  ++G +SAP++P +RPH
Sbjct: 143  APAVPSIPSSSAPPIPDIPSSAAPPIPIVPSSPAPPLPLSG-ASAPKVPQNRPH 195



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>O46392:CO1A2_CANFA Collagen alpha-2(I) chain precursor - Canis familiaris (Dog)|
          Length = 1366

 Score = 34.3 bits (77), Expect = 3.0
 Identities = 20/49 (40%), Positives = 23/49 (46%)
 Frame = -3

Query: 1510 GKP*DGEAPTSPSMGSNYAACYMGVPLPLGPRPETPMPPDRMTGFSSAP 1364
            G P     P  P +G N+AA Y G  + LGP P   M P    G S AP
Sbjct: 60   GPPGPPGPPGPPGLGGNFAAQYDGKGVGLGPGPMGLMGPRGPPGASGAP 108



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>P08123:CO1A2_HUMAN Collagen alpha-2(I) chain precursor - Homo sapiens (Human)|
          Length = 1366

 Score = 33.1 bits (74), Expect = 6.7
 Identities = 19/49 (38%), Positives = 23/49 (46%)
 Frame = -3

Query: 1510 GKP*DGEAPTSPSMGSNYAACYMGVPLPLGPRPETPMPPDRMTGFSSAP 1364
            G P     P  P +G N+AA Y G  + LGP P   M P    G + AP
Sbjct: 60   GPPGPPGPPGPPGLGGNFAAQYDGKGVGLGPGPMGLMGPRGPPGAAGAP 108



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>Q5TM26:BAT2_MACMU Large proline-rich protein BAT2 - Macaca mulatta (Rhesus macaque)|
          Length = 2160

 Score = 33.1 bits (74), Expect = 6.7
 Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 12/84 (14%)
 Frame = +1

Query: 256 APPATSVSPTPVETTRRIVKAPWIHSRASA-------HESCSQSPARST-----GAAPWV 399
           APPA   +P P     + + AP   S ASA        ES    PA+ T      AAP +
Sbjct: 510 APPAAPSTPAPPPAVPKELPAPLAPSPASAPTPEKEPEESAQAPPAQCTPTPGVAAAPTL 569

Query: 400 FRGGLRTNPTGGPNLSVSHPSPRV 471
             GG  T+ T   +   S   P++
Sbjct: 570 VSGGGSTSSTSSGSFEASPVEPQL 593



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>Q05859:FMN1B_MOUSE Formin-1, isoform IV - Mus musculus (Mouse)|
          Length = 1206

 Score = 32.7 bits (73), Expect = 8.7
 Identities = 24/75 (32%), Positives = 31/75 (41%)
 Frame = -3

Query: 1558 PFLPP*IPVSPGLCCQGKP*DGEAPTSPSMGSNYAACYMGVPLPLGPRPETPMPPDRMTG 1379
            P +PP  P+ PGL        G  P +P +      C +  P P  P P TP+PP    G
Sbjct: 656  PLIPPPPPLPPGL--------GPLPPAPPIPP---VCPVSPPPPPPPPPPTPVPPS--DG 702

Query: 1378 FSSAPQIPSSRPHYL 1334
                P  P   P+ L
Sbjct: 703  PPPPPPPPPPLPNVL 717



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>Q05860:FMN1A_MOUSE Formin-1, isoforms I/II/III - Mus musculus (Mouse)|
          Length = 1468

 Score = 32.7 bits (73), Expect = 8.7
 Identities = 24/75 (32%), Positives = 31/75 (41%)
 Frame = -3

Query: 1558 PFLPP*IPVSPGLCCQGKP*DGEAPTSPSMGSNYAACYMGVPLPLGPRPETPMPPDRMTG 1379
            P +PP  P+ PGL        G  P +P +      C +  P P  P P TP+PP    G
Sbjct: 882  PLIPPPPPLPPGL--------GPLPPAPPIPP---VCPVSPPPPPPPPPPTPVPPS--DG 928

Query: 1378 FSSAPQIPSSRPHYL 1334
                P  P   P+ L
Sbjct: 929  PPPPPPPPPPLPNVL 943



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>Q86T65:DAAM2_HUMAN Disheveled-associated activator of morphogenesis 2 - Homo sapiens|
            (Human)
          Length = 1068

 Score = 32.7 bits (73), Expect = 8.7
 Identities = 19/53 (35%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
 Frame = -3

Query: 1552 LPP*IPVSPGLCCQGKP*DGEAPTSPSMGSNYAACY-MGVPLPLGPRPETPMP 1397
            LPP  P  P  CC   P     P  P        C  MG+PLP  P P + +P
Sbjct: 540  LPPPPPPLPFACCPPPPPPPLPPGGPPTPPGAPPCLGMGLPLPQDPYPSSDVP 592



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>P37697:CCPA_ACEXY Cellulose-complementing protein - Acetobacter xylinus|
            (Gluconacetobacter xylinus)
          Length = 353

 Score = 32.7 bits (73), Expect = 8.7
 Identities = 18/48 (37%), Positives = 23/48 (47%)
 Frame = -3

Query: 1486 PTSPSMGSNYAACYMGVPLPLGPRPETPMPPDRMTGFSSAPQIPSSRP 1343
            P +P   S   A     P+P  P P TP P  R+TG ++    P SRP
Sbjct: 148  PAAPDPASVPYANVAAAPVPPDPAPVTPAPQARVTGPNTRMVEPFSRP 195


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 550,408,856
Number of extensions: 13397394
Number of successful extensions: 36657
Number of sequences better than 10.0: 8
Number of HSP's gapped: 36519
Number of HSP's successfully gapped: 8
Length of query: 956
Length of database: 100,686,439
Length adjustment: 123
Effective length of query: 833
Effective length of database: 66,948,154
Effective search space: 55767812282
Effective search space used: 55767812282
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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