ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf77i16
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY368673.1| Triticum turgidum HMW-glutenin locus, complete se... 113 4e-21
2gb|AF521177.1| Hordeum vulgare contig 211252, complete sequence 78 2e-10
3gb|AY204215.1| Hordeum vulgare subsp. spontaneum clone Ghs-L-4 T... 68 2e-07
4gb|AY661558.1| Hordeum vulgare subsp. vulgare eIF4E gene locus, ... 56 7e-04
5gb|AC016522.10| Mus musculus chromosome 7, clone RP23-352D23, co... 52 0.011
6gb|AC151986.4| Mus musculus BAC clone RP23-365E22 from chromosom... 52 0.011
7ref|NM_001070870.1| Oryza sativa (japonica cultivar-group) Os10g... 50 0.045
8gb|DQ365822.1| Oryza australiensis transposon Ty3/gypsy LTR retr... 50 0.045
9gb|DQ128056.1| Triticum aestivum clone p3-5, genomic sequence 50 0.045
10gb|DQ128055.1| Triticum aestivum clone p3-3, genomic sequence 50 0.045
11gb|DQ128054.1| Triticum aestivum clone p3-2, genomic sequence 50 0.045
12gb|DQ145754.1| Triticum aestivum clone A3-3, genomic sequence 50 0.045
13gb|DQ128047.1| Triticum aestivum clone P8-1 Ty3/gypsy-like retro... 50 0.045
14gb|DQ128046.1| Triticum aestivum clone P4-6 Ty3/gypsy-like retro... 50 0.045
15gb|DQ128042.1| Triticum aestivum clone A6-6 Ty3/gypsy-like retro... 50 0.045
16gb|DQ128041.1| Triticum aestivum clone A4-5 Ty3/gypsy-like retro... 50 0.045
17gb|DQ128040.1| Triticum aestivum clone A4-4 Ty3/gypsy-like retro... 50 0.045
18gb|DQ128038.1| Triticum aestivum clone A4-1 Ty3/gypsy-like retro... 50 0.045
19gb|DQ128035.1| Triticum aestivum clone A3-4 Ty3/gypsy-like retro... 50 0.045
20gb|DQ128034.1| Triticum aestivum clone A3-3 Ty3/gypsy-like retro... 50 0.045
21gb|DQ128033.1| Triticum aestivum clone A2-6 Ty3/gypsy-like retro... 50 0.045
22gb|AC140235.3| Mus musculus BAC clone RP24-272D15 from chromosom... 50 0.045
23gb|AC119149.2| Oryza sativa (japonica cultivar-group) chromosome... 50 0.045
24gb|AC120497.1| Genomic sequence for Oryza sativa, Nipponbare str... 50 0.045
25gb|AY919050.1| Lolium perenne clone LpSSR026 SSR marker sequence 50 0.045
26gb|AC113339.1| Genomic sequence for Oryza sativa (japonica culti... 50 0.045
27dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.045
28dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.045
29gb|AC098565.3| Oryza sativa chromosome 10 clone OSJNBa0028C16, c... 50 0.045
30dbj|AP004811.2| Oryza sativa (japonica cultivar-group) genomic D... 50 0.045
31gb|U58023.1|PSU58023 Pseudoroegneria stipifolia RAPD fragment fr... 50 0.045
32dbj|AK105548.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.045
33gb|DQ128043.1| Triticum aestivum clone A8-1 Ty3/gypsy-like retro... 48 0.18
34gb|AC134925.4| Oryza sativa (japonica cultivar-group) chromosome... 46 0.70
35gb|AC136481.6| Oryza sativa (japonica cultivar-group) chromosome... 46 0.70
36gb|AC007490.7| Homo sapiens chromosome 16 clone RP11-132F7, comp... 46 0.70
37dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.70
38emb|AL009179.1|HS97D16 Human DNA sequence from clone RP1-97D16 o... 46 0.70
39gb|AC007501.2|AC007501 Homo sapiens chromosome 16 clone RPCI-11_... 46 0.70
40emb|BX571856.1| Staphylococcus aureus subsp. aureus strain MRSA2... 46 0.70
41emb|CT573213.2| Frankia alni str. ACN14A chromosome, complete se... 44 2.8
42gb|AC189656.1| Brassica rapa subsp. pekinensis clone KBrS015K01,... 44 2.8
43gb|DQ537337.1| Triticum aestivum clone BAC 897M20, complete sequ... 44 2.8
44gb|CP000141.1| Carboxydothermus hydrogenoformans Z-2901, complet... 44 2.8
45gb|AC145324.3| Oryza sativa (japonica cultivar-group) chromosome... 44 2.8
46gb|AF497474.1| Aegilops tauschii leucine-rich-like protein gene,... 44 2.8
47gb|DQ249273.1| Hordeum vulgare subsp. vulgare cultivar Morex BAC... 44 2.8
48dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 44 2.8
49dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 44 2.8
50gb|AC092366.3| Homo sapiens chromosome 5 clone RP11-461C13, comp... 44 2.8
51emb|CR339046.11| Zebrafish DNA sequence from clone CH211-112C15 ... 44 2.8
52ref|XM_647992.1| Entamoeba histolytica HM-1:IMSS hypothetical pr... 44 2.8
53dbj|AP006757.2| Oryza sativa (japonica cultivar-group) genomic D... 44 2.8
54dbj|AP003791.4| Oryza sativa (japonica cultivar-group) genomic D... 44 2.8
55gb|AC037459.16| Homo sapiens chromosome 8, clone RP11-582J16, co... 44 2.8
56emb|AL731602.3|OSJN00251 Oryza sativa genomic DNA, chromosome 4,... 44 2.8
57emb|AL731612.3|OSJN00254 Oryza sativa genomic DNA, chromosome 4,... 44 2.8
58gb|AC087854.11| Homo sapiens chromosome 8, clone RP11-382J24, co... 44 2.8 
>gb|AY368673.1| Triticum turgidum HMW-glutenin locus, complete sequence
          Length = 285506
 Score =  113 bits (57), Expect = 4e-21
 Identities = 66/69 (95%)
 Strand = Plus / Plus

                                                                          
Query: 2384   tcttgatgtttgcgagtacattcaaagtactcactcgcttgtcactggctattgtcttgg 2443
              |||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 265764 tctttatgtttgcgagtacattcaaagtactcactggcttgtccctggctattgtcttgg 265823

                       
Query: 2444   ccagatttc 2452
              |||||||||
Sbjct: 265824 ccagatttc 265832



 Score = 56.0 bits (28), Expect = 7e-04
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                                  
Query: 2034   tatgtggtgttgctcagacgcccaactgtggcatgc 2069
              |||||||||| |||||||||||| ||||||||||||
Sbjct: 265580 tatgtggtgtcgctcagacgcccgactgtggcatgc 265615



 Score = 52.0 bits (26), Expect = 0.011
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                    
Query: 1459   aatttgatcccatgctaggcgaggttggagcctcccca 1496
              ||||||||||||||||| ||| ||||| ||||||||||
Sbjct: 264675 aatttgatcccatgctacgcggggttgtagcctcccca 264712



 Score = 52.0 bits (26), Expect = 0.011
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                                
Query: 2034   tatgtggtgttgctcagacgcccaactgtggcat 2067
              |||||||||| |||||||||||| ||||||||||
Sbjct: 265230 tatgtggtgtcgctcagacgcccgactgtggcat 265263



 Score = 52.0 bits (26), Expect = 0.011
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                                
Query: 2034   tatgtggtgttgctcagacgcccaactgtggcat 2067
              |||||||||| |||||||||||| ||||||||||
Sbjct: 265280 tatgtggtgtcgctcagacgcccgactgtggcat 265313



 Score = 52.0 bits (26), Expect = 0.011
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                                
Query: 2034   tatgtggtgttgctcagacgcccaactgtggcat 2067
              |||||||||| |||||||||||| ||||||||||
Sbjct: 265380 tatgtggtgtcgctcagacgcccgactgtggcat 265413



 Score = 52.0 bits (26), Expect = 0.011
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                                
Query: 2034   tatgtggtgttgctcagacgcccaactgtggcat 2067
              |||||||||| |||||||||||| ||||||||||
Sbjct: 265480 tatgtggtgtcgctcagacgcccgactgtggcat 265513



 Score = 52.0 bits (26), Expect = 0.011
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                                
Query: 2034   tatgtggtgttgctcagacgcccaactgtggcat 2067
              |||||||||| |||||||||||| ||||||||||
Sbjct: 265530 tatgtggtgtcgctcagacgcccgactgtggcat 265563



 Score = 46.1 bits (23), Expect = 0.70
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                     
Query: 1968   gccctctatgtggtgtctcctagatgcccgactgtggca 2006
              ||||| ||||||||||| | |||| ||||||||||||||
Sbjct: 265124 gccctttatgtggtgtcgcttagacgcccgactgtggca 265162



 Score = 46.1 bits (23), Expect = 0.70
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                     
Query: 1968   gccctctatgtggtgtctcctagatgcccgactgtggca 2006
              ||||| |||||||||||||  ||| ||||||||||||||
Sbjct: 265324 gccctttatgtggtgtctctcagacgcccgactgtggca 265362



 Score = 44.1 bits (22), Expect = 2.8
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 1390   ggtcagggggcatgggtgtttccggt 1415
              |||| |||||||||||||||||||||
Sbjct: 264607 ggtccgggggcatgggtgtttccggt 264632



 Score = 44.1 bits (22), Expect = 2.8
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                                
Query: 2034   tatgtggtgttgctcagacgcccaactgtggcat 2067
              |||||||||| |||||||||||| ||| ||||||
Sbjct: 265180 tatgtggtgtcgctcagacgcccgactatggcat 265213



 Score = 44.1 bits (22), Expect = 2.8
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                                
Query: 2034   tatgtggtgttgctcagacgcccaactgtggcat 2067
              ||||||||||  ||||||||||| ||||||||||
Sbjct: 265330 tatgtggtgtctctcagacgcccgactgtggcat 265363



 Score = 44.1 bits (22), Expect = 2.8
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                                
Query: 2034   tatgtggtgttgctcagacgcccaactgtggcat 2067
              |||||||||| |||||||||||| || |||||||
Sbjct: 265430 tatgtggtgtcgctcagacgcccgacagtggcat 265463
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>gb|AF521177.1| Hordeum vulgare contig 211252, complete sequence
          Length = 211664

 Score = 77.8 bits (39), Expect = 2e-10
 Identities = 97/115 (84%), Gaps = 1/115 (0%)
 Strand = Plus / Minus

                                                                         
Query: 1617  gactattgaaacccgtgggatgtgggtaaagagtacaccccctataaagtcaaaactatt 1676
             |||||| ||||||||| || |||||||||||||||| ||| ||| | |||||||||||||
Sbjct: 71616 gactatcgaaacccgttggttgtgggtaaagagtac-ccctctacagagtcaaaactatt 71558

                                                                    
Query: 1677  cgagtagccgtgtccacggtagaggacagctcgttgactagtcaagtgtcggtct 1731
             ||| |||||| ||||| |||  |||||   | ||||||  |||||||||||||||
Sbjct: 71557 cgattagccgcgtccatggtcaaggacgattggttgacatgtcaagtgtcggtct 71503



 Score = 61.9 bits (31), Expect = 1e-05
 Identities = 108/131 (82%), Gaps = 2/131 (1%)
 Strand = Plus / Minus

                                                                         
Query: 1229  tagatcgattcttgttagtatgtcaccttaccttt-cgtgctgccacaagtcttcccgaa 1287
             |||||||| ||||||  || | ||||||||| ||| ||| |||||||| |  ||||||||
Sbjct: 71999 tagatcgagtcttgtctgtgtatcaccttactttttcgtactgccacatgctttcccgaa 71940

                                                                         
Query: 1288  agggaatacggtttagtaggtcataaacatattaccaggtacacatcaagtagtggggcc 1347
             |||||||||| ||||||||||   || | |||| ||| ||||||| ||||||| ||| ||
Sbjct: 71939 agggaatacgatttagtaggttgcaaccctatttccatgtacacaccaagtagagggtcc 71880

                        
Query: 1348  gggatgaaggt 1358
              ||||||||||
Sbjct: 71879 -ggatgaaggt 71870



 Score = 48.1 bits (24), Expect = 0.18
 Identities = 34/36 (94%), Gaps = 1/36 (2%)
 Strand = Plus / Minus

                                                 
Query: 1380  ccagtcatccggtcagggggc-atgggtgtttccgg 1414
             ||||||||||||||||||||| |||| |||||||||
Sbjct: 71849 ccagtcatccggtcagggggcaatggatgtttccgg 71814
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>gb|AY204215.1| Hordeum vulgare subsp. spontaneum clone Ghs-L-4 Ty3-gypsy
            retrotransposon RT gene, partial sequence
          Length = 477

 Score = 67.9 bits (34), Expect = 2e-07
 Identities = 40/42 (95%)
 Strand = Plus / Minus

                                                      
Query: 2390 tgtttgcgagtacattcaaagtactcactcgcttgtcactgg 2431
            ||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 413  tgtttgcgagtacattcaaagtactcactggcttgccactgg 372
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>gb|AY661558.1| Hordeum vulgare subsp. vulgare eIF4E gene locus, complete sequence
          Length = 439641

 Score = 56.0 bits (28), Expect = 7e-04
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                      
Query: 1376   aaatccagtcatccggtcagggggcatgggtgtttccggt 1415
              |||||| ||||||  |||||||||||||||||||||||||
Sbjct: 226373 aaatcctgtcatcgtgtcagggggcatgggtgtttccggt 226412



 Score = 56.0 bits (28), Expect = 7e-04
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                      
Query: 1376   aaatccagtcatccggtcagggggcatgggtgtttccggt 1415
              |||||| ||||||| |||||| ||||||||||||||||||
Sbjct: 246715 aaatcctgtcatcctgtcaggtggcatgggtgtttccggt 246754



 Score = 56.0 bits (28), Expect = 7e-04
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                      
Query: 1376   aaatccagtcatccggtcagggggcatgggtgtttccggt 1415
              |||||| ||||||  |||||||||||||||||||||||||
Sbjct: 336229 aaatcctgtcatcgtgtcagggggcatgggtgtttccggt 336268



 Score = 50.1 bits (25), Expect = 0.045
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                               
Query: 2525   ttatctaggtcagttgttcctgtgggaatggag 2557
              ||||| |||||||| ||||||||||||||||||
Sbjct: 285198 ttatccaggtcagtcgttcctgtgggaatggag 285230



 Score = 50.1 bits (25), Expect = 0.045
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                               
Query: 2525   ttatctaggtcagttgttcctgtgggaatggag 2557
              ||||| |||||||| ||||||||||||||||||
Sbjct: 399426 ttatccaggtcagtcgttcctgtgggaatggag 399458



 Score = 46.1 bits (23), Expect = 0.70
 Identities = 39/43 (90%), Gaps = 1/43 (2%)
 Strand = Plus / Plus

                                                         
Query: 1373   actaaatccagtcatccggtcagggggcatgggtgtttccggt 1415
              |||| |||| |||||| ||||||||| ||||||||||||||||
Sbjct: 283991 actagatcctgtcatcgggtcagggg-catgggtgtttccggt 284032



 Score = 46.1 bits (23), Expect = 0.70
 Identities = 39/43 (90%), Gaps = 1/43 (2%)
 Strand = Plus / Plus

                                                         
Query: 1373   actaaatccagtcatccggtcagggggcatgggtgtttccggt 1415
              |||| |||| |||||| ||||||||| ||||||||||||||||
Sbjct: 398220 actagatcctgtcatcgggtcagggg-catgggtgtttccggt 398261
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>gb|AC016522.10| Mus musculus chromosome 7, clone RP23-352D23, complete sequence
          Length = 191935

 Score = 52.0 bits (26), Expect = 0.011
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                            
Query: 1830   catgtgtggtatatggatttgttagagtgt 1859
              ||||||||||||||| ||||||||||||||
Sbjct: 185351 catgtgtggtatatgtatttgttagagtgt 185322
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>gb|AC151986.4| Mus musculus BAC clone RP23-365E22 from chromosome 7, complete sequence
          Length = 199337

 Score = 52.0 bits (26), Expect = 0.011
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                            
Query: 1830   catgtgtggtatatggatttgttagagtgt 1859
              ||||||||||||||| ||||||||||||||
Sbjct: 197088 catgtgtggtatatgtatttgttagagtgt 197117
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>ref|NM_001070870.1| Oryza sativa (japonica cultivar-group) Os10g0318200 (Os10g0318200)
            mRNA, complete cds
          Length = 1759

 Score = 50.1 bits (25), Expect = 0.045
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                         
Query: 1668 aaaactattcgagtagccgtgtccacggt 1696
            |||||||||||| ||||||||||||||||
Sbjct: 1110 aaaactattcgaatagccgtgtccacggt 1138
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>gb|DQ365822.1| Oryza australiensis transposon Ty3/gypsy LTR retrotransposon dingo
            gag/pol pseudogene, complete sequence
          Length = 11375

 Score = 50.1 bits (25), Expect = 0.045
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                         
Query: 1668 aaaactattcgagtagccgtgtccacggt 1696
            ||||||||||||||||||||| |||||||
Sbjct: 2344 aaaactattcgagtagccgtgcccacggt 2372
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>gb|DQ128056.1| Triticum aestivum clone p3-5, genomic sequence
          Length = 374

 Score = 50.1 bits (25), Expect = 0.045
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                             
Query: 2393 ttgcgagtacattcaaagtactcactcgcttgt 2425
            |||||||||| ||||||||||||||| ||||||
Sbjct: 237  ttgcgagtactttcaaagtactcactggcttgt 269
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>gb|DQ128055.1| Triticum aestivum clone p3-3, genomic sequence
          Length = 484

 Score = 50.1 bits (25), Expect = 0.045
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                             
Query: 2393 ttgcgagtacattcaaagtactcactcgcttgt 2425
            |||||||||| ||||||||||||||| ||||||
Sbjct: 233  ttgcgagtactttcaaagtactcactggcttgt 265
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>gb|DQ128054.1| Triticum aestivum clone p3-2, genomic sequence
          Length = 310

 Score = 50.1 bits (25), Expect = 0.045
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                             
Query: 2393 ttgcgagtacattcaaagtactcactcgcttgt 2425
            |||||||||| ||||||||||||||| ||||||
Sbjct: 239  ttgcgagtactttcaaagtactcactggcttgt 271
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>gb|DQ145754.1| Triticum aestivum clone A3-3, genomic sequence
          Length = 493

 Score = 50.1 bits (25), Expect = 0.045
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                             
Query: 2393 ttgcgagtacattcaaagtactcactcgcttgt 2425
            |||||||||| ||||||||||||||| ||||||
Sbjct: 237  ttgcgagtactttcaaagtactcactggcttgt 269
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>gb|DQ128047.1| Triticum aestivum clone P8-1 Ty3/gypsy-like retrotransposon, partial
            sequence
          Length = 473

 Score = 50.1 bits (25), Expect = 0.045
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                             
Query: 2393 ttgcgagtacattcaaagtactcactcgcttgt 2425
            |||||||||| ||||||||||||||| ||||||
Sbjct: 237  ttgcgagtactttcaaagtactcactggcttgt 269
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>gb|DQ128046.1| Triticum aestivum clone P4-6 Ty3/gypsy-like retrotransposon, partial
            sequence
          Length = 494

 Score = 50.1 bits (25), Expect = 0.045
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                             
Query: 2393 ttgcgagtacattcaaagtactcactcgcttgt 2425
            |||||||||| ||||||||||||||| ||||||
Sbjct: 238  ttgcgagtactttcaaagtactcactggcttgt 270
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>gb|DQ128042.1| Triticum aestivum clone A6-6 Ty3/gypsy-like retrotransposon, partial
            sequence
          Length = 336

 Score = 50.1 bits (25), Expect = 0.045
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                             
Query: 2393 ttgcgagtacattcaaagtactcactcgcttgt 2425
            |||||||||| ||||||||||||||| ||||||
Sbjct: 80   ttgcgagtactttcaaagtactcactggcttgt 112
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>gb|DQ128041.1| Triticum aestivum clone A4-5 Ty3/gypsy-like retrotransposon, partial
            sequence
          Length = 487

 Score = 50.1 bits (25), Expect = 0.045
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                             
Query: 2393 ttgcgagtacattcaaagtactcactcgcttgt 2425
            |||||||||| ||||||||||||||| ||||||
Sbjct: 231  ttgcgagtactttcaaagtactcactggcttgt 263
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>gb|DQ128040.1| Triticum aestivum clone A4-4 Ty3/gypsy-like retrotransposon, partial
            sequence
          Length = 470

 Score = 50.1 bits (25), Expect = 0.045
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                             
Query: 2393 ttgcgagtacattcaaagtactcactcgcttgt 2425
            |||||||||| ||||||||||||||| ||||||
Sbjct: 232  ttgcgagtactttcaaagtactcactggcttgt 264
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>gb|DQ128038.1| Triticum aestivum clone A4-1 Ty3/gypsy-like retrotransposon, partial
            sequence
          Length = 410

 Score = 50.1 bits (25), Expect = 0.045
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                             
Query: 2393 ttgcgagtacattcaaagtactcactcgcttgt 2425
            |||||||||| ||||||||||||||| ||||||
Sbjct: 155  ttgcgagtactttcaaagtactcactggcttgt 187
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>gb|DQ128035.1| Triticum aestivum clone A3-4 Ty3/gypsy-like retrotransposon, partial
            sequence
          Length = 486

 Score = 50.1 bits (25), Expect = 0.045
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                             
Query: 2393 ttgcgagtacattcaaagtactcactcgcttgt 2425
            |||||||||| ||||||||||||||| ||||||
Sbjct: 230  ttgcgagtactttcaaagtactcactggcttgt 262
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>gb|DQ128034.1| Triticum aestivum clone A3-3 Ty3/gypsy-like retrotransposon, partial
            sequence
          Length = 342

 Score = 50.1 bits (25), Expect = 0.045
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                             
Query: 2393 ttgcgagtacattcaaagtactcactcgcttgt 2425
            |||||||||| ||||||||||||||| ||||||
Sbjct: 86   ttgcgagtactttcaaagtactcactggcttgt 118
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>gb|DQ128033.1| Triticum aestivum clone A2-6 Ty3/gypsy-like retrotransposon, partial
            sequence
          Length = 258

 Score = 50.1 bits (25), Expect = 0.045
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                             
Query: 2393 ttgcgagtacattcaaagtactcactcgcttgt 2425
            |||||||||| ||||||||||||||| ||||||
Sbjct: 2    ttgcgagtactttcaaagtactcactggcttgt 34
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>gb|AC140235.3| Mus musculus BAC clone RP24-272D15 from chromosome 7, complete sequence
          Length = 185617

 Score = 50.1 bits (25), Expect = 0.045
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                           
Query: 679    tttactttattttatttacgaatttgttt 707
              |||||||||||||||||| ||||||||||
Sbjct: 113265 tttactttattttatttatgaatttgttt 113293
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>gb|AC119149.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNBb0079E01, complete sequence
          Length = 132870

 Score = 50.1 bits (25), Expect = 0.045
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                          
Query: 1668  aaaactattcgagtagccgtgtccacggt 1696
             |||||||||||| ||||||||||||||||
Sbjct: 52213 aaaactattcgaatagccgtgtccacggt 52241
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>gb|AC120497.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNAa0082N11, from chromosome 10, complete sequence
          Length = 127525

 Score = 50.1 bits (25), Expect = 0.045
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                          
Query: 1668  aaaactattcgagtagccgtgtccacggt 1696
             |||||||||||| ||||||||||||||||
Sbjct: 73557 aaaactattcgaatagccgtgtccacggt 73529
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>gb|AY919050.1| Lolium perenne clone LpSSR026 SSR marker sequence
          Length = 529

 Score = 50.1 bits (25), Expect = 0.045
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                         
Query: 1668 aaaactattcgagtagccgtgtccacggt 1696
            |||||||||||| ||||||||||||||||
Sbjct: 125  aaaactattcgaatagccgtgtccacggt 153
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>gb|AC113339.1| Genomic sequence for Oryza sativa (japonica cultivar-group) cultivar
            Nipponbare clone OSJNBb0047B19, from chromosome 10,
            complete sequence
          Length = 137015

 Score = 50.1 bits (25), Expect = 0.045
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 1668 aaaactattcgagtagccgtgtccacggt 1696
            |||||||||||| ||||||||||||||||
Sbjct: 6032 aaaactattcgaatagccgtgtccacggt 6004
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10
          Length = 22685906

 Score = 50.1 bits (25), Expect = 0.045
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                            
Query: 1668    aaaactattcgagtagccgtgtccacggt 1696
               |||||||||||| ||||||||||||||||
Sbjct: 3080178 aaaactattcgaatagccgtgtccacggt 3080206



 Score = 50.1 bits (25), Expect = 0.045
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                            
Query: 1668    aaaactattcgagtagccgtgtccacggt 1696
               |||||||||||| ||||||||||||||||
Sbjct: 7563038 aaaactattcgaatagccgtgtccacggt 7563010



 Score = 50.1 bits (25), Expect = 0.045
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                            
Query: 1668    aaaactattcgagtagccgtgtccacggt 1696
               |||||||||||| ||||||||||||||||
Sbjct: 8040490 aaaactattcgaatagccgtgtccacggt 8040462
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6
          Length = 30731886

 Score = 50.1 bits (25), Expect = 0.045
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                             
Query: 1668     aaaactattcgagtagccgtgtccacggt 1696
                |||||||||||| ||||||||||||||||
Sbjct: 12796491 aaaactattcgaatagccgtgtccacggt 12796463
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>gb|AC098565.3| Oryza sativa chromosome 10 clone OSJNBa0028C16, complete sequence
          Length = 166757

 Score = 50.1 bits (25), Expect = 0.045
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                          
Query: 1668  aaaactattcgagtagccgtgtccacggt 1696
             |||||||||||| ||||||||||||||||
Sbjct: 49810 aaaactattcgaatagccgtgtccacggt 49838
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>dbj|AP004811.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0019A05
          Length = 144255

 Score = 50.1 bits (25), Expect = 0.045
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                          
Query: 1668  aaaactattcgagtagccgtgtccacggt 1696
             |||||||||||| ||||||||||||||||
Sbjct: 97268 aaaactattcgaatagccgtgtccacggt 97240
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>gb|U58023.1|PSU58023 Pseudoroegneria stipifolia RAPD fragment from primer OPN01
          Length = 817

 Score = 50.1 bits (25), Expect = 0.045
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                     
Query: 2393 ttgcgagtacattcaaagtactcac 2417
            |||||||||||||||||||||||||
Sbjct: 642  ttgcgagtacattcaaagtactcac 618
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>dbj|AK105548.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-128-A08, full
            insert sequence
          Length = 1759

 Score = 50.1 bits (25), Expect = 0.045
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                         
Query: 1668 aaaactattcgagtagccgtgtccacggt 1696
            |||||||||||| ||||||||||||||||
Sbjct: 1110 aaaactattcgaatagccgtgtccacggt 1138
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>gb|DQ128043.1| Triticum aestivum clone A8-1 Ty3/gypsy-like retrotransposon, partial
            sequence
          Length = 239

 Score = 48.1 bits (24), Expect = 0.18
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                            
Query: 2394 tgcgagtacattcaaagtactcactcgcttgt 2425
            ||||||||| ||||||||||||||| ||||||
Sbjct: 1    tgcgagtactttcaaagtactcactggcttgt 32
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>gb|AC134925.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0041J17,
              complete sequence
          Length = 148829

 Score = 46.1 bits (23), Expect = 0.70
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 1666   tcaaaactattcgagtagccgtg 1688
              |||||||||||||||||||||||
Sbjct: 119375 tcaaaactattcgagtagccgtg 119353
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>gb|AC136481.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0007D07, complete sequence
          Length = 133930

 Score = 46.1 bits (23), Expect = 0.70
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 1666  tcaaaactattcgagtagccgtg 1688
             |||||||||||||||||||||||
Sbjct: 18994 tcaaaactattcgagtagccgtg 18972
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>gb|AC007490.7| Homo sapiens chromosome 16 clone RP11-132F7, complete sequence
          Length = 169207

 Score = 46.1 bits (23), Expect = 0.70
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 2135   actgtggcatgtgtagtaatttttcct 2161
              ||||||| |||||||||||||||||||
Sbjct: 100734 actgtggaatgtgtagtaatttttcct 100708
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11
          Length = 28386948

 Score = 46.1 bits (23), Expect = 0.70
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                       
Query: 1666     tcaaaactattcgagtagccgtg 1688
                |||||||||||||||||||||||
Sbjct: 19016177 tcaaaactattcgagtagccgtg 19016155



 Score = 44.1 bits (22), Expect = 2.8
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 1668    aaaactattcgagtagccgtgtccac 1693
               |||||||||||| |||||||||||||
Sbjct: 8311470 aaaactattcgaatagccgtgtccac 8311445
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>emb|AL009179.1|HS97D16 Human DNA sequence from clone RP1-97D16 on chromosome 6p21.3-22.2
             Contains a novel pseudogene, a 60S Ribosomal protein L30
             (RPL30) pseudogene, H4 histone family member F pseudogene
             H4FFP and histone genes H2BFC, H2AFC, H3FK. Contains ESTs,
             STSs, GSSs and two CpG islands, complete sequence
          Length = 139904

 Score = 46.1 bits (23), Expect = 0.70
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 674   taaactttactttattttattta 696
             |||||||||||||||||||||||
Sbjct: 11355 taaactttactttattttattta 11333
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>gb|AC007501.2|AC007501 Homo sapiens chromosome 16 clone RPCI-11_67I13, complete sequence
          Length = 162617

 Score = 46.1 bits (23), Expect = 0.70
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 2135   actgtggcatgtgtagtaatttttcct 2161
              ||||||| |||||||||||||||||||
Sbjct: 152037 actgtggaatgtgtagtaatttttcct 152011
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>emb|BX571856.1| Staphylococcus aureus subsp. aureus strain MRSA252, complete genome
          Length = 2902619

 Score = 46.1 bits (23), Expect = 0.70
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 706     ttcaaaaatatggaaacaaaatt 728
               |||||||||||||||||||||||
Sbjct: 1616041 ttcaaaaatatggaaacaaaatt 1616063
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>emb|CT573213.2| Frankia alni str. ACN14A chromosome, complete sequence
          Length = 7497934

 Score = 44.1 bits (22), Expect = 2.8
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 363     gtcgccggcgaggagcaccgga 384
               ||||||||||||||||||||||
Sbjct: 1241591 gtcgccggcgaggagcaccgga 1241612
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>gb|AC189656.1| Brassica rapa subsp. pekinensis clone KBrS015K01, complete sequence
          Length = 106028

 Score = 44.1 bits (22), Expect = 2.8
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 945   catccttgcataaatccatgtg 966
             ||||||||||||||||||||||
Sbjct: 66573 catccttgcataaatccatgtg 66552
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>gb|DQ537337.1| Triticum aestivum clone BAC 897M20, complete sequence
          Length = 152010

 Score = 44.1 bits (22), Expect = 2.8
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 1672   ctattcgagtagccgtgtccacggta 1697
              |||||||| |||||||||||||||||
Sbjct: 105448 ctattcgaatagccgtgtccacggta 105473
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>gb|CP000141.1| Carboxydothermus hydrogenoformans Z-2901, complete genome
          Length = 2401520

 Score = 44.1 bits (22), Expect = 2.8
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 743     gaattgcggttggaatggtattattt 768
               ||||||||||||||| ||||||||||
Sbjct: 2056535 gaattgcggttggaagggtattattt 2056560
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>gb|AC145324.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0026D03 map near S2137, complete sequence
          Length = 115141

 Score = 44.1 bits (22), Expect = 2.8
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 1668  aaaactattcgagtagccgtgtccac 1693
             |||||||||||| |||||||||||||
Sbjct: 20930 aaaactattcgaatagccgtgtccac 20955
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>gb|AF497474.1| Aegilops tauschii leucine-rich-like protein gene, partial cds; seed
             globulin (Glo-2) gene, complete cds; HMW-glutenin
             (Glu-Dty) gene, Glu-Dty-T2 allele, complete cds; and
             HMW-glutenin (HMW) gene, HMW-Dtx2 allele, complete cds
          Length = 102842

 Score = 44.1 bits (22), Expect = 2.8
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 1672  ctattcgagtagccgtgtccacggta 1697
             |||||||| |||||||||||||||||
Sbjct: 92484 ctattcgaatagccgtgtccacggta 92509
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>gb|DQ249273.1| Hordeum vulgare subsp. vulgare cultivar Morex BAC 631P8, complete
             sequence
          Length = 101158

 Score = 44.1 bits (22), Expect = 2.8
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                       
Query: 2390  tgtttgcgagtacattcaaagtactcactcgcttgtcactgg 2431
             ||||||||||| ||||||||||||| | | ||||| ||||||
Sbjct: 27901 tgtttgcgagttcattcaaagtacttattggcttgccactgg 27860
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4
          Length = 35498469

 Score = 44.1 bits (22), Expect = 2.8
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                             
Query: 1667    caaaactattcgagtagccgtgtccacggt 1696
               ||||||||||||| |||||||| |||||||
Sbjct: 2151103 caaaactattcgaatagccgtgcccacggt 2151074



 Score = 44.1 bits (22), Expect = 2.8
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                             
Query: 1667    caaaactattcgagtagccgtgtccacggt 1696
               ||||||||||||| |||||||| |||||||
Sbjct: 2185546 caaaactattcgaatagccgtgcccacggt 2185517
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1
          Length = 43261740

 Score = 44.1 bits (22), Expect = 2.8
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 704      gtttcaaaaatatggaaacaaa 725
                ||||||||||||||||||||||
Sbjct: 39336241 gtttcaaaaatatggaaacaaa 39336220
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>gb|AC092366.3| Homo sapiens chromosome 5 clone RP11-461C13, complete sequence
          Length = 158230

 Score = 44.1 bits (22), Expect = 2.8
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 1569   attctgagtgtttatctctaaa 1590
              ||||||||||||||||||||||
Sbjct: 121951 attctgagtgtttatctctaaa 121972
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>emb|CR339046.11| Zebrafish DNA sequence from clone CH211-112C15 in linkage group 23,
             complete sequence
          Length = 170974

 Score = 44.1 bits (22), Expect = 2.8
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 1891  atatgtttattgttttgttatg 1912
             ||||||||||||||||||||||
Sbjct: 28649 atatgtttattgttttgttatg 28628
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>ref|XM_647992.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (94.t00013)
            partial mRNA
          Length = 423

 Score = 44.1 bits (22), Expect = 2.8
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 1891 atatgtttattgttttgttatg 1912
            ||||||||||||||||||||||
Sbjct: 16   atatgtttattgttttgttatg 37
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>dbj|AP006757.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0551C06
          Length = 149829

 Score = 44.1 bits (22), Expect = 2.8
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 704    gtttcaaaaatatggaaacaaa 725
              ||||||||||||||||||||||
Sbjct: 117487 gtttcaaaaatatggaaacaaa 117466
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>dbj|AP003791.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1065G12
          Length = 165006

 Score = 44.1 bits (22), Expect = 2.8
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 704    gtttcaaaaatatggaaacaaa 725
              ||||||||||||||||||||||
Sbjct: 137947 gtttcaaaaatatggaaacaaa 137926
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>gb|AC037459.16| Homo sapiens chromosome 8, clone RP11-582J16, complete sequence
          Length = 174888

 Score = 44.1 bits (22), Expect = 2.8
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 2651  tttgtatttttcttggaatttc 2672
             ||||||||||||||||||||||
Sbjct: 17227 tttgtatttttcttggaatttc 17248
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>emb|AL731602.3|OSJN00251 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0059H15,
             complete sequence
          Length = 149181

 Score = 44.1 bits (22), Expect = 2.8
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 1667  caaaactattcgagtagccgtgtccacggt 1696
             ||||||||||||| |||||||| |||||||
Sbjct: 65731 caaaactattcgaatagccgtgcccacggt 65702



 Score = 44.1 bits (22), Expect = 2.8
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                            
Query: 1667   caaaactattcgagtagccgtgtccacggt 1696
              ||||||||||||| |||||||| |||||||
Sbjct: 100174 caaaactattcgaatagccgtgcccacggt 100145
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>emb|AL731612.3|OSJN00254 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0070D17,
             complete sequence
          Length = 163376

 Score = 44.1 bits (22), Expect = 2.8
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 1667  caaaactattcgagtagccgtgtccacggt 1696
             ||||||||||||| |||||||| |||||||
Sbjct: 10553 caaaactattcgaatagccgtgcccacggt 10524
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>gb|AC087854.11| Homo sapiens chromosome 8, clone RP11-382J24, complete sequence
          Length = 157419

 Score = 44.1 bits (22), Expect = 2.8
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 2651  tttgtatttttcttggaatttc 2672
             ||||||||||||||||||||||
Sbjct: 28517 tttgtatttttcttggaatttc 28496


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 521,152,802
Number of extensions: 29254099
Number of successful extensions: 230924
Number of sequences better than 10.0: 58
Number of HSP's gapped: 230922
Number of HSP's successfully gapped: 84
Length of query: 2868
Length of database: 18,610,659,111
Length adjustment: 23
Effective length of query: 2845
Effective length of database: 18,503,978,556
Effective search space: 52643818991820
Effective search space used: 52643818991820
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 15 (30.2 bits)
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