Clone Information

BLAST Search Result

Clone Name	FLbaf75k11
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	AK109646:Os01g0110200	35	0.21
2	Os10g0572700:Os10g0572700	35	0.27
3	Os12g0215900:Os12g0215900	33	0.60
4	Os03g0717300:Os03g0717300	33	0.60
5	AK062519:Os02g0612600	32	1.3
6	Os12g0240800:Os12g0240800	32	1.8
7	Os09g0408900:Os09g0408900	32	2.3
8	AK110442:	32	2.3
9	AK111195:Os03g0173700	32	2.3
10	AK101161:Os03g0173700	32	2.3
11	AK069409:Os02g0527700	32	2.3
12	AK110900:Os07g0680400	31	3.0
13	AK066380:Os03g0294800	31	3.0
14	AK061955:Os03g0294800	31	3.0
15	Os10g0511800:Os10g0511800	31	3.9
16	Os06g0101900:Os06g0101900	31	3.9
17	AK120391:Os01g0184200	25	5.5
18	Os07g0108200:Os07g0108200	30	6.7
19	AK108920:Os01g0111700	30	6.7
20	Os01g0899800:Os01g0899800	28	7.9
21	Os08g0223700:Os08g0223700	30	8.7
22	AK105582:Os04g0681500	30	8.7
23	Os06g0574400:Os06g0574400	30	8.7
24	Os05g0561600:Os05g0561600	30	8.7
25	AK071072:Os11g0157300	30	8.7

>AK109646:Os01g0110200 |
          Length = 240
 Score = 35.0 bits (79), Expect = 0.21
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +2

Query: 638 SPAPPASCSTMTPPRSSRQCSPVVPAIRPLSP 733
           +PA PA  +T TPP +  +  PV PA+ P++P
Sbjct: 51  APATPAPTATPTPPVAPAKAPPVAPAVAPVTP 82

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>Os10g0572700:Os10g0572700 |
          Length = 361

 Score = 34.7 bits (78), Expect = 0.27
 Identities = 40/147 (27%), Positives = 52/147 (35%), Gaps = 15/147 (10%)
 Frame = -3

Query: 760 GRSEGKANTRRQRPDGWHDRGALPGTARWRH--RGAASWWSWTERERLLTAVCRRPTVID 587
           GR+  +A  RR R DG  D  A  G+ R RH  RG+    +  +R R             
Sbjct: 50  GRAGLEAARRRARSDGTGDATAGRGSRRRRHARRGSGMATATAQRRR------------R 97

Query: 586 SSHGTGGDGERRCRRAWARL-------------GVVAGLWEGHDQGSSPILCRTASDHRD 446
           ++    G   RRC  AW                G VA   +G   G++  +    SD  D
Sbjct: 98  AARSDDGTRRRRCAVAWGARRRDGRQRRGARGDGTVARRRDGDGDGAAAAVTARGSDGSD 157

Query: 445 SDLGTQTDVIDRPDWWSWSLPWLVNSL 365
            D G       R     W L  L  SL
Sbjct: 158 GDGGAGLGAAGRAQ-QRWRLALLEESL 183

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>Os12g0215900:Os12g0215900 |
          Length = 1617

 Score = 33.5 bits (75), Expect = 0.60
 Identities = 27/77 (35%), Positives = 30/77 (38%), Gaps = 8/77 (10%)
 Frame = -3

Query: 757  RSEGKANTRRQRPDGWHDRGALPG--------TARWRHRGAASWWSWTERERLLTAVCRR 602
            R +G    RR   D  H RGA  G        TA WR  GA  W    +  RL T     
Sbjct: 1522 RRDGATGRRRATRDR-HGRGARGGGHATRGDATAAWRRDGATGWRRDGDGARLATTTA-T 1579

Query: 601  PTVIDSSHGTGGDGERR 551
             T+     G  GDG RR
Sbjct: 1580 ATIGRRGAGLDGDGRRR 1596

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>Os03g0717300:Os03g0717300 |
          Length = 160

 Score = 33.5 bits (75), Expect = 0.60
 Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = +2

Query: 626 PLSFSPAPPASCSTMTPPR--SSRQCSPVVPAIRPLS 730
           P +  PA P+SCS   PPR  SSR+  P  P  RP S
Sbjct: 92  PPTSPPASPSSCSPSAPPRRDSSRRAPPPRPPARPSS 128

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>AK062519:Os02g0612600 |
          Length = 75

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
 Frame = +3

Query: 672 RHRAVPGSAPRSCQPSGRCLRVLAFP----SLRPGLATPTKPRK 791
           R  ++P +  R   P+GR  R+L++P    S RP LA+P  PR+
Sbjct: 30  RATSLPPATVRDSFPAGRRSRLLSYPWLLSSCRPALASPLPPRR 73

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>Os12g0240800:Os12g0240800 |
          Length = 449

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 17/43 (39%), Positives = 20/43 (46%)
 Frame = +3

Query: 96  RSSTCRQCRARGLPPQGRSGAHDPPPPTTCLLYGHAAAQDRSG 224
           R   CR  R R  PP  RS A    PP   + +GHA A   +G
Sbjct: 256 RPRRCRPSRWRSSPPSSRSKAGPWRPPLQLMGFGHATAAVAAG 298

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>Os09g0408900:Os09g0408900 |
          Length = 300

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 8/47 (17%)
 Frame = -3

Query: 583 SHGTGGDGERRCRR---AWAR-----LGVVAGLWEGHDQGSSPILCR 467
           S G+  DGERR RR    WAR     +GV  GL   H+   +PI+ R
Sbjct: 5   SAGSSSDGERRRRREELTWARRHEVVVGVARGLLYLHEDAHTPIIHR 51

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>AK110442: |
          Length = 104

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +3

Query: 543 RRHRLS-PSPPVPCDESMTVGLLHTAVSSRSLS 638
           R HRL+ P PP+PCD++ +  L +  VS+R  S
Sbjct: 30  RSHRLNRPHPPLPCDQNRSQHLCNMRVSNRRAS 62

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>AK111195:Os03g0173700 |
          Length = 704

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
 Frame = +2

Query: 620 QQPLSFSPAPP-------ASCSTMTPPRSSRQCSPVVPAIRPLSPGVGLSFTTP 760
           QQP +F   PP       ++C TM PP SS+   P  P++R L+     +F TP
Sbjct: 604 QQPSAFGTLPPPRPSQQFSACGTMLPPSSSQ---PFCPSVRSLAM---QTFATP 651

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>AK101161:Os03g0173700 |
          Length = 704

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
 Frame = +2

Query: 620 QQPLSFSPAPP-------ASCSTMTPPRSSRQCSPVVPAIRPLSPGVGLSFTTP 760
           QQP +F   PP       ++C TM PP SS+   P  P++R L+     +F TP
Sbjct: 604 QQPSAFGTLPPPRPSQQFSACGTMLPPSSSQ---PFCPSVRSLAM---QTFATP 651

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>AK069409:Os02g0527700 |
          Length = 91

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 15/52 (28%), Positives = 23/52 (44%)
 Frame = -3

Query: 772 VASPGRSEGKANTRRQRPDGWHDRGALPGTARWRHRGAASWWSWTERERLLT 617
           +A+P  S G  +  R+R   +H   +LP   R  H   A W  W+   +  T
Sbjct: 15  LATPASSGGTTSASRRRRSRYHPPPSLPRPRRRHHLQRARWGRWSATNKAAT 66

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>AK110900:Os07g0680400 |
          Length = 333

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
 Frame = +2

Query: 584 RIDDCWSSAHRRQQPLSFSPAPPASCSTMTPPRSSRQCSPVVPAIR---PLSPGVGLSFT 754
           R+D    S HR     +  P P  S +    P  S +C+    A+    PLS  VG + T
Sbjct: 217 RVDPLRQSRHRLMAE-AVDPTPSCSFANCHSPVLSSECASEAAALSSSLPLSAVVGSAVT 275

Query: 755 TPRTS 769
           TP TS
Sbjct: 276 TPSTS 280

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>AK066380:Os03g0294800 |
          Length = 500

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
 Frame = +1

Query: 124 PAVSLPKVAPEPT----ILLHLQLVSSTVTPPPKIAPEPTS*VAEH 249
           P VS PK +P P+    I+ H        TPP  + P+PT+  AEH
Sbjct: 88  PWVSPPKGSPSPSPSSKIIAHRSPHHPFTTPPQLVRPKPTTRRAEH 133

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>AK061955:Os03g0294800 |
          Length = 481

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
 Frame = +1

Query: 124 PAVSLPKVAPEPT----ILLHLQLVSSTVTPPPKIAPEPTS*VAEH 249
           P VS PK +P P+    I+ H        TPP  + P+PT+  AEH
Sbjct: 69  PWVSPPKGSPSPSPSSKIIAHRSPHHPFTTPPQLVRPKPTTRRAEH 114

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>Os10g0511800:Os10g0511800 |
          Length = 705

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +3

Query: 120 RARGLPPQGRSGAHDPPPP 176
           R RG PP+ R GA  PPPP
Sbjct: 121 RKRGRPPKNRDGAAPPPPP 139

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>Os06g0101900:Os06g0101900 |
          Length = 249

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 6/90 (6%)
 Frame = +3

Query: 537 HARRHRL------SPSPPVPCDESMTVGLLHTAVSSRSLSVQLHQLAAPR*RHRAVPGSA 698
           H RRHR       SP PP+PC  +        + SSR+   +  ++A P     A P  +
Sbjct: 111 HCRRHRSVTVAASSPVPPLPCRITAPAAAPRASPSSRAPLRRRRRVARPA---VASPVPS 167

Query: 699 PRSCQPSGRCLRVLAFPSLRPGLATPTKPR 788
           PR+   +    R  A PS R   +    PR
Sbjct: 168 PRAVAVARLEPRAAASPSHRRAPSPSPMPR 197

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>AK120391:Os01g0184200 |
          Length = 189

 Score = 25.0 bits (53), Expect(2) = 5.5
 Identities = 17/37 (45%), Positives = 20/37 (54%)
 Frame = +2

Query: 617 RQQPLSFSPAPPASCSTMTPPRSSRQCSPVVPAIRPL 727
           RQ PLS SP+P  S S+  P R +       PAIR L
Sbjct: 91  RQPPLSPSPSPSPSPSSSFPDRWT-------PAIRRL 120



 Score = 23.9 bits (50), Expect(2) = 5.5
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 537 HARRHRLSPSPPVPCDESMTVG 602
           H RRH L+PS     +E+ T G
Sbjct: 50  HCRRHTLAPSAAYANEEAGTAG 71

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>Os07g0108200:Os07g0108200 |
          Length = 568

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -3

Query: 601 PTVIDSSHGTGGDGERRCRRAWARLGVVAGLWEGHD 494
           P +     G GGDGERR RR W       G W+G +
Sbjct: 66  PLLQQQQDGGGGDGERRRRRWW------WGWWDGEE 95

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>AK108920:Os01g0111700 |
          Length = 175

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -2

Query: 269 RRRSRRWCSATQLVGSGAILGGGVTVEETSCRWRRIVGSG 150
           RR SR+ CS+     +G   GGG+ VEE    WR+ +  G
Sbjct: 98  RRSSRQGCSSDDDDEAG---GGGLAVEEEEALWRKTIMMG 134

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>Os01g0899800:Os01g0899800 |
          Length = 692

 Score = 27.7 bits (60), Expect(2) = 7.9
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -3

Query: 622 LTAVCRRPTVIDSSHGTGGDGERRCRRAWARLGVVAGLWEGHDQGSSP 479
           ++AV    T + SSH  GGDG ++ +  +    V A  + G   G  P
Sbjct: 611 MSAVSATATAVASSHDHGGDGGKQVQMGYDSYLVGADAYGGGGAGRMP 658



 Score = 20.4 bits (41), Expect(2) = 7.9
 Identities = 8/27 (29%), Positives = 11/27 (40%)
 Frame = -1

Query: 402 GGAGRCHGWSTLSSISKGGKQEKGMNG 322
           GGAGR   W+   + +        M G
Sbjct: 652 GGAGRMPSWAMTPASAPAATSSSDMTG 678

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>Os08g0223700:Os08g0223700 |
          Length = 1424

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +2

Query: 1421 EEIDAAR-EEQVVDLYVPSRPCSPWYASATLSFY 1519
            EE++A   E+ V  LY   R CSPW + ++L +Y
Sbjct: 920  EELNAILGEDDVAPLYWLRRTCSPWLSDSSLDWY 953

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>AK105582:Os04g0681500 |
          Length = 364

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = +3

Query: 1485 AHGMPLLLSLFTFTCICLLPKQQPRPPLAAI 1577
            A  M LLLS      +CLLP     PP+AAI
Sbjct: 4    AAAMALLLSTSVLLVLCLLPVDPAAPPVAAI 34

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>Os06g0574400:Os06g0574400 |
          Length = 1609

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = -1

Query: 729 DSGLMAGTTGEHCRELRGGVIVEQLAGGAGLKESG 625
           D+G++A TTG   +E R G I  QL  G G +E G
Sbjct: 249 DTGVVAATTGGTAQEKRSGGIGMQLEVGNGKEELG 283

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>Os05g0561600:Os05g0561600 |
          Length = 681

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 22/79 (27%), Positives = 28/79 (35%)
 Frame = -1

Query: 1875 PSSRSHCPPPFGRPAHQQHPSPSSLQHLHNDLLLFVALRANKIVPFQSQLYLKRRTYYQI 1696
            P+  S  PPP  +PA    P P+          LF+ L      PF    YL R    Q 
Sbjct: 40   PARGSRAPPPHAKPAPDSDPPPALSLSPPRLFFLFLFL---FFFPFPFSPYLFRPRLEQT 96

Query: 1695 QQTKNMSISAKIYPHHFQF 1639
            Q    +  S +  P    F
Sbjct: 97   QLVSTLHFSLRFTPPFLLF 115

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>AK071072:Os11g0157300 |
          Length = 342

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 16/46 (34%), Positives = 17/46 (36%)
 Frame = -1

Query: 1926 TNSKAHVR*NFPSALAAPSSRSHCPPPFGRPAHQQHPSPSSLQHLH 1789
            TN  A     +P     P S SH PPP     H  H  P    H H
Sbjct: 97   TNGTAAFAVAYPYPAPPPHSHSHPPPPPPHAYHHHHYPPPPPPHHH 142


  Database: orf_amino.fa.out
    Posted date:  Jul 26, 2007 11:37 AM
  Number of letters in database: 15,399,855
  Number of sequences in database:  40,041
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 40041
Number of Hits to DB: 60,764,153
Number of extensions: 1484087
Number of successful extensions: 6307
Number of sequences better than 10.0: 25
Number of HSP's gapped: 6274
Number of HSP's successfully gapped: 27
Length of query: 703
Length of database: 15,399,855
Length adjustment: 108
Effective length of query: 595
Effective length of database: 11,075,427
Effective search space: 6589879065
Effective search space used: 6589879065
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result