ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | FLbaf66h16 |
|---|---|
| Clone Library Name | barley_pub |
>Q9SVG4:RETOL_ARATH Reticuline oxidase-like protein precursor - Arabidopsis thaliana| (Mouse-ear cress) Length = 570 Score = 334 bits (857), Expect = 7e-91 Identities = 194/533 (36%), Positives = 290/533 (54%), Gaps = 16/533 (3%) Frame = +1 Query: 55 LVLTLYILSVSGQNTLSNLGHSAAIHGFLGCLSADIPSGLIQ------TPATPSYSALLL 216 L L+L + S S N++ N FL C S S Q + P++S++L Sbjct: 20 LFLSLPLSSFSQSNSVYN--------SFLKCFSDKTKSPQSQITDNVFSQTNPAFSSVLR 71 Query: 217 STARNLRYILPDSSKPVGIIAAAEHAHVQTTXXXXXXXXXXXXXXXXXHDYEGLSYASVH 396 + RN R+ + KP II +HV HDY+GLSY S Sbjct: 72 AYIRNARFNTSSTLKPTIIITPRSESHVSAAVTCSKTLNFLLKIRSGGHDYDGLSYIS-- 129 Query: 397 LHNEPFAVLDLAALRAIHVDPARAEAWAESGATVGELYYAVGAASRSLGFPAGSCPTMXX 576 ++PF +LD++ +R + VD A AW +GAT+GE+YY + SR GFPAG CPT+ Sbjct: 130 --DKPFFILDMSNIRDVSVDIASNSAWISAGATLGEVYYRIWEKSRVHGFPAGVCPTVGV 187 Query: 577 XXXXXXXXXXSLARKYGXXXXXXXXXXXXXXXGRLMNRSSMGEELFWAICGGGGESFGVV 756 ++ RK+G GR+++R +MGE+LFWAI GGGG S+GVV Sbjct: 188 GGHLSGGGYGNMVRKFGLSVDYVEDAKIVDVNGRVLDRKAMGEDLFWAITGGGGGSYGVV 247 Query: 757 LSWKVRLVPVPETVTVLSITRSRSQGAVELITKWQEVAPVLPQEVYLRVL--------VL 912 L +KV+LVPVP VTV + + GAV+++ KWQ V P +++R+L V Sbjct: 248 LGYKVKLVPVPSVVTVFRVEQYMDSGAVDMVHKWQSVGPKTDPNLFMRMLIQPVTRKKVK 307 Query: 913 NQQANFQAMFLGRCGGLHRLMQYRFPELGMTEQDCEEVSWVQSTVFFG--FSTTSMPPEQ 1086 +A+ A+FLGR + L+ FPELG+ +++C E++W QS +++ + T + P+ Sbjct: 308 TVRASVVALFLGRADEVVALLSKEFPELGLKKENCSEMTWFQSALWWDNRLNATQVDPKV 367 Query: 1087 LLNRSSNPSYYLKAKSDHVQDPIARDVWESIWAGWLDKPEAALLMLDPYGGLMSSISPSE 1266 L+R+ + S + K KSD+V I + ES++ ++ + L+ +PYGG M+ ++ + Sbjct: 368 FLDRNLDTSSFGKRKSDYVATAIPKKGIESLFKKMIELGKIG-LVFNPYGGKMAEVAVNA 426 Query: 1267 TPFPHRRGNLYQIQYYSFWYDNGTAAAEKRMSWVRGLYNEMEPYVSSNPRAVYVNYRDLD 1446 PFPH R L++IQY W +N + ++ + LY+ M +VS NPR+ Y NYRD+D Sbjct: 427 KPFPH-RNKLFKIQYSVNWKENSAEIEKGYLNQAKVLYSFMTGFVSKNPRSSYFNYRDVD 485 Query: 1447 LGTNELDGNVTSYHKATVWGHKYFKGNFKRLAAVKTMVDPHDFFRNEQSIPPL 1605 +G N D SY + V+G KYF NF RL +KT VDP +FFRNEQSIP L Sbjct: 486 IGVN--DHGANSYKEGEVYGRKYFGENFDRLVKIKTAVDPGNFFRNEQSIPTL 536
>P93479:RETO_PAPSO Reticuline oxidase precursor - Papaver somniferum (Opium poppy)| Length = 535 Score = 269 bits (687), Expect = 3e-71 Identities = 162/513 (31%), Positives = 250/513 (48%), Gaps = 9/513 (1%) Frame = +1 Query: 94 NTLSNLGHSAAIHGFLGCLSADIPSGLIQTPATPSYSALLLSTARNLRYILPDSSKPVGI 273 N LS+ +S +H F + T Y LL ++ +N + P SKP I Sbjct: 29 NLLSSCLNSHGVHNFT----------TLSTDTNSDYFKLLHASMQNPLFAKPTVSKPSFI 78 Query: 274 IAAAEHAHVQTTXXXXXXXXXXXXXXXXXHDYEGLSYASVHLHNEPFAVLDLAALRAIHV 453 + + +T H YEGLSY + + PF ++D+ L I + Sbjct: 79 VMPGSKEELSSTVHCCTRESWTIRLRSGGHSYEGLSYTA----DTPFVIVDMMNLNRISI 134 Query: 454 DPARAEAWAESGATVGELYYAVGAASRSLGFPAGSCPTMXXXXXXXXXXXXSLARKYGXX 633 D AW ESGAT+GELYYA+ ++ +LGF AG CPT+ ++RKYG Sbjct: 135 DVLSETAWVESGATLGELYYAIAQSTDTLGFTAGWCPTVGSGGHISGGGFGMMSRKYGLA 194 Query: 634 XXXXXXXXXXXXXGRLMNRSSMGEELFWAICGGGGESFGVVLSWKVRLVPVPETVTVLSI 813 G +++R MG+++FWAI GGGG +G + +WK++L+PVPE +TV + Sbjct: 195 ADNVVDAILIDSNGAILDREKMGDDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKLTVFRV 254 Query: 814 TRSRS-QGAVELITKWQEVAPVLPQEVYLRVL--VLNQQA--NFQAMFLGRCGGLHRLMQ 978 T++ + A L+ KWQ VA L ++ + VL V A F + LGR ++ Sbjct: 255 TKNVGIEDASSLLHKWQYVADELDEDFTVSVLGGVNGNDAWLMFLGLHLGRKDAAKTIID 314 Query: 979 YRFPELGMTEQDCEEVSWVQSTVFF-GFSTTSMPPEQLLNRSSNPSYYLKAKSDHVQDPI 1155 +FPELG+ +++ +E+SW +S F G T S + L K K D + + Sbjct: 315 EKFPELGLVDKEFQEMSWGESMAFLSGLDTISELNNRFLKFDERA---FKTKVDFTKVSV 371 Query: 1156 ARDVWESIWAGWLDKPEAALLMLDPYGGLMSSISPSETPFPHRRGNLYQIQYYSFWYDNG 1335 +V+ ++P + L+ +GG MS IS TPFPHR+G +Y W + Sbjct: 372 PLNVFRHALEMLSEQP-GGFIALNGFGGKMSEISTDFTPFPHRKGTKLMFEYIIAWNQDE 430 Query: 1336 TAAAEKRMSWVRGLYNEMEPYVSSNPRAVYVNYRDLDLG---TNELDGNVTSYHKATVWG 1506 + + W+ Y+ +EP+VS PR YVN+ DLD+G + A WG Sbjct: 431 ESKIGEFSEWLAKFYDYLEPFVSKEPRVGYVNHIDLDIGGIDWRNKSSTTNAVEIARNWG 490 Query: 1507 HKYFKGNFKRLAAVKTMVDPHDFFRNEQSIPPL 1605 +YF N++RL KT++DP++ F + QSIPP+ Sbjct: 491 ERYFSSNYERLVKAKTLIDPNNVFNHPQSIPPM 523
>P30986:RETO_ESCCA Reticuline oxidase precursor - Eschscholzia californica (California| poppy) Length = 538 Score = 263 bits (672), Expect = 2e-69 Identities = 160/460 (34%), Positives = 228/460 (49%), Gaps = 10/460 (2%) Frame = +1 Query: 256 SKPVGIIAAAEHAHVQTTXXXXXXXXXXXXXXXXXHDYEGLSYASVHLHNEPFAVLDLAA 435 SKP II + T H YEGLSY S + PF ++DL Sbjct: 69 SKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGHSYEGLSYTS----DTPFILIDLMN 124 Query: 436 LRAIHVDPARAEAWAESGATVGELYYAVGAASRSLGFPAGSCPTMXXXXXXXXXXXXSLA 615 L + +D AW ESG+T+GELYYA+ +S LGF AG CPT+ ++ Sbjct: 125 LNRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGHISGGGFGMMS 184 Query: 616 RKYGXXXXXXXXXXXXXXXGRLMNRSSMGEELFWAICGGGGESFGVVLSWKVRLVPVPET 795 RKYG G +++R +MGE++FWAI GGGG +G + +WK++L+PVPE Sbjct: 185 RKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEK 244 Query: 796 VTVLSITRSRS-QGAVELITKWQEVAPVLPQEVYLRVLVLNQQANFQAMFLGRCGGLHRL 972 VTV +T++ + A L+ KWQ VA L ++ L VL + LG GL + Sbjct: 245 VTVFRVTKNVAIDEATSLLHKWQFVAEELEEDFTLSVLGGADEKQVWLTMLGFHFGLKTV 304 Query: 973 ----MQYRFPELGMTEQDCEEVSWVQSTVFF-GFSTTSMPPEQLLNRSSNPSYYLKAKSD 1137 FPELG+ E+D E+SW +S + G T S + L K K D Sbjct: 305 AKSTFDLLFPELGLVEEDYLEMSWGESFAYLAGLETVSQLNNRFLKFDERA---FKTKVD 361 Query: 1138 HVQDPIARDVWESIWAGWLDKPEAALLMLDPYGGLMSSISPSETPFPHRRGNLYQIQYYS 1317 ++P+ + + L K + L+ +GG MS IS TPFPHR G ++Y Sbjct: 362 LTKEPLPSKAFYGLLER-LSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIV 420 Query: 1318 FWYDNGTAAAEKRMSWVRGLYNEMEPYVSSNPRAVYVNYRDLDLGTNELDGNVTSYHKA- 1494 W + + + W+ +Y M+P+VS NPR YVN+ DLDLG + GN T + A Sbjct: 421 AWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDW-GNKTVVNNAI 479 Query: 1495 ---TVWGHKYFKGNFKRLAAVKTMVDPHDFFRNEQSIPPL 1605 WG YF N++RL KT++DP++ F + QSIPP+ Sbjct: 480 EISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIPPM 519
>P08159:HDNO_ARTOX 6-hydroxy-D-nicotine oxidase - Arthrobacter oxidans| Length = 458 Score = 45.1 bits (105), Expect = 0.001 Identities = 51/191 (26%), Positives = 75/191 (39%), Gaps = 4/191 (2%) Frame = +1 Query: 403 NEPFAVLDLAALRAIHVDPARAEAWAESGATVGELYYAVGAASRSLGFPAGSCPTMXXXX 582 N+ VLDL + +IH+D A + A G G+L AA L G P + Sbjct: 79 NDGGIVLDLRLMNSIHIDTAGSRARIGGGVISGDL--VKEAAKFGLAAVTGMHPKVGFCG 136 Query: 583 XXXXXXXXSLARKYGXXXXXXXXXXXXXXXGRLMNRS-SMGEELFWAICGGGGESFGVVL 759 L KYG G ++ S ELFWA+ G G +FGVV Sbjct: 137 LALNGGVGFLTPKYGLASDNILGATLVTATGDVIYCSDDERPELFWAV-RGAGPNFGVVT 195 Query: 760 SWKVRLVPVPETVTVLSITRSRSQGAVE-LITKWQEVAPVLPQEVYLRVL--VLNQQANF 930 +V+L +P + IT + S + L+T + + +Y V V +A Sbjct: 196 EVEVQLYELPRKMLAGFITWAPSVSELAGLLTSLLDALNEMADHIYPSVFVGVDENRAPS 255 Query: 931 QAMFLGRCGGL 963 + +G GGL Sbjct: 256 VTVCVGHLGGL 266
>P43485:MCRA_STRLA Mitomycin radical oxidase - Streptomyces lavendulae| Length = 448 Score = 43.9 bits (102), Expect = 0.002 Identities = 34/118 (28%), Positives = 51/118 (43%), Gaps = 1/118 (0%) Frame = +1 Query: 436 LRAIHVDPARAEAWAESGATVGELYYAVGAASRSLGFPAGSCPTMXXXXXXXXXXXXSLA 615 + + VD ARA AW E+GA ++ A L GS P + L Sbjct: 81 MEGVSVDAARATAWIEAGARWRKV--LEHTAPHGLAPLNGSSPNVGAVGYLVGGGAGLLG 138 Query: 616 RKYGXXXXXXXXXXXXXXXGRLMN-RSSMGEELFWAICGGGGESFGVVLSWKVRLVPV 786 R++G GRL + + +LFWA+ GG ++FG+V+ +V L PV Sbjct: 139 RRFGYAADHVRRLRLVTADGRLRDVTAGTDPDLFWAV-RGGKDNFGLVVGMEVDLFPV 195
>Q03173:ENAH_MOUSE Protein enabled homolog - Mus musculus (Mouse)| Length = 802 Score = 37.0 bits (84), Expect = 0.28 Identities = 25/67 (37%), Positives = 28/67 (41%) Frame = +3 Query: 54 PCPNPLHPLGLGPKHAL*FRSFRCNPWIPWLPLRGHPVWPHPDPGNPVLLRPPAVHRPEP 233 P P P PL GP +A P P LP G P P P P P PP P P Sbjct: 543 PAPPPPPPLPSGPAYASALPPPPGPPPPPPLPSTGPPPPPPPPPPLPNQAPPPPPPPPAP 602 Query: 234 PLHPAGL 254 PL +G+ Sbjct: 603 PLPASGI 609
>Q9QXA5:LSM4_MOUSE U6 snRNA-associated Sm-like protein LSm4 - Mus musculus (Mouse)| Length = 137 Score = 33.5 bits (75), Expect = 3.1 Identities = 14/23 (60%), Positives = 17/23 (73%) Frame = -3 Query: 235 GGSGRWTAGGRSRTGLPGSG*GQ 167 GG+GR GGR R G+PG+G GQ Sbjct: 103 GGAGRGVFGGRGRGGIPGAGRGQ 125
>Q9Y4Z0:LSM4_HUMAN U6 snRNA-associated Sm-like protein LSm4 - Homo sapiens (Human)| Length = 139 Score = 33.5 bits (75), Expect = 3.1 Identities = 14/23 (60%), Positives = 17/23 (73%) Frame = -3 Query: 235 GGSGRWTAGGRSRTGLPGSG*GQ 167 GG+GR GGR R G+PG+G GQ Sbjct: 105 GGAGRGVFGGRGRGGIPGTGRGQ 127
>Q3ZBK6:LSM4_BOVIN U6 snRNA-associated Sm-like protein LSm4 - Bos taurus (Bovine)| Length = 139 Score = 33.5 bits (75), Expect = 3.1 Identities = 14/23 (60%), Positives = 17/23 (73%) Frame = -3 Query: 235 GGSGRWTAGGRSRTGLPGSG*GQ 167 GG+GR GGR R G+PG+G GQ Sbjct: 105 GGAGRGVFGGRGRGGIPGTGRGQ 127
>P33485:VNUA_PRVKA Probable nuclear antigen - Pseudorabies virus (strain Kaplan) (PRV)| Length = 1733 Score = 32.7 bits (73), Expect = 5.3 Identities = 28/72 (38%), Positives = 31/72 (43%), Gaps = 11/72 (15%) Frame = -3 Query: 238 SGGSGRWTAGGRSRTGLPGS-G*GQTGCPRRGSQ--------GIHGLQRNDLN*RAC--F 92 SGG G AG R R G G G G C R G + G +R L R Sbjct: 1585 SGGGGAAAAGRRDRPGGGGGWGSGPPPCRRCGHRCWLCWWRRGPRPRRRPGLTDRVPPRG 1644 Query: 91 GPRPRGCRGLGQ 56 GP PRGCRG G+ Sbjct: 1645 GPSPRGCRGAGR 1656
>P30382:1B04_GORGO Class I histocompatibility antigen, GOGO-B0201 alpha chain| precursor - Gorilla gorilla gorilla (Lowland gorilla) Length = 363 Score = 32.0 bits (71), Expect = 9.1 Identities = 27/92 (29%), Positives = 36/92 (39%), Gaps = 1/92 (1%) Frame = -2 Query: 299 TWACS-AAAMIPTGFEESGRM*RRFRAVDSRRAE*DGVAGVWMRPDGMSAERQPRNPWIA 123 TWA S + T GR RF V D VW D S ++PR PWI Sbjct: 22 TWAGSHSMRYFHTAMSRPGRGEPRFITVGYV----DDTQFVWFDSDAASPRKEPRTPWIE 77 Query: 122 AE*PKLESVFWPETERM*RVRTRCNIVVLRVL 27 E P+ +W ++ + T+ V L L Sbjct: 78 QEGPE----YWDRETQISKTNTQTYRVGLGTL 105
>P15095:RDRP_NMV RNA replication protein - Narcissus mosaic virus (NMV)| Length = 1643 Score = 32.0 bits (71), Expect = 9.1 Identities = 20/57 (35%), Positives = 27/57 (47%) Frame = +1 Query: 724 CGGGGESFGVVLSWKVRLVPVPETVTVLSITRSRSQGAVELITKWQEVAPVLPQEVY 894 CGG G+SF + W L VTV++ T V L WQ P+LP +V+ Sbjct: 869 CGGSGKSFAIQ-EWMRSLKEDQSVVTVVTPT-------VLLRNDWQTKLPILPADVF 917
>Q6DE87:CHK1_XENLA Serine/threonine-protein kinase Chk1 - Xenopus laevis (African clawed| frog) Length = 474 Score = 32.0 bits (71), Expect = 9.1 Identities = 28/106 (26%), Positives = 46/106 (43%), Gaps = 5/106 (4%) Frame = +1 Query: 790 ETVTVLSITRSRSQGAVELITKWQEVAPVLPQEVYLRVLVLNQQANFQAMFLGRCGGLHR 969 E V V + +R+ E I K + +L +R ++ N Q +FL C G Sbjct: 33 EAVAVKIVDMTRAADCPENIKKEICINRMLSHTNIVRFYGHRREGNIQYLFLEYCRG-GE 91 Query: 970 LMQYRFPELGMTEQDCEE-----VSWVQSTVFFGFSTTSMPPEQLL 1092 L P++GM EQD ++ ++ V+ G + + PE LL Sbjct: 92 LFDRIEPDVGMPEQDAQKFFQQLIAGVEYLHSIGITHRDIKPENLL 137 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 301,365,878 Number of extensions: 6800626 Number of successful extensions: 21097 Number of sequences better than 10.0: 13 Number of HSP's gapped: 20958 Number of HSP's successfully gapped: 13 Length of query: 620 Length of database: 100,686,439 Length adjustment: 119 Effective length of query: 501 Effective length of database: 68,045,334 Effective search space: 34090712334 Effective search space used: 34090712334 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
