ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf63m21 |
|---|---|
| Clone Library Name | barley_pub |
>LOC_Os02g40040:12002.t03640:unspliced-genomic expressed protein| Length = 2469 Score = 78.0 bits (164), Expect(4) = 4e-38 Identities = 33/41 (80%), Positives = 37/41 (90%) Frame = -1 / -1 Query: 256 SMGKSRGERRVIFSSSGATHTTSESHLRRVLAGTAARAAKT 134 +MGKSRG+RRVIFSSSGA HTTS SHLRR+L GTAARA +T Sbjct: 351 TMGKSRGDRRVIFSSSGAAHTTSASHLRRLLEGTAARARET 229 Score = 75.3 bits (158), Expect(4) = 4e-38 Identities = 25/30 (83%), Positives = 26/30 (86%) Frame = -3 / -2 Query: 344 SW*WMGQWCFHRAELWEDVRSPPRLRFLPF 255 SW WMGQWCFHRAE WED+R PPRL FLPF Sbjct: 2123 SWQWMGQWCFHRAEFWEDIRPPPRLWFLPF 2034 Score = 46.4 bits (95), Expect(4) = 4e-38 Identities = 20/28 (71%), Positives = 20/28 (71%) Frame = -2 / -1 Query: 501 FYLPQATSSKITQLACLGHLPQDPPCQD 418 FYL TSSKIT LAC GH PQ PCQD Sbjct: 2280 FYLT*PTSSKITPLACPGHPPQVLPCQD 2197 Score = 21.7 bits (41), Expect(4) = 4e-38 Identities = 9/13 (69%), Positives = 10/13 (76%) Frame = -1 / -2 Query: 577 CLEPI*ADTTNIS 539 CL+PI*A TN S Sbjct: 2378 CLQPI*AGRTNRS 2340 Score = 73.5 bits (154), Expect(4) = 6e-32 Identities = 26/26 (100%), Positives = 26/26 (100%) Frame = +3 / +3 Query: 255 EWEKPKPGRRPDIFPKFSPMKTPLPH 332 EWEKPKPGRRPDIFPKFSPMKTPLPH Sbjct: 2034 EWEKPKPGRRPDIFPKFSPMKTPLPH 2111 Score = 62.0 bits (129), Expect(4) = 6e-32 Identities = 25/33 (75%), Positives = 29/33 (87%) Frame = +2 / +1 Query: 158 PGEDAAQVGLARGVRGP*RGEDYAALAPRFPHR 256 P E+AA++G ARGVRGP RGEDYAA+APRF HR Sbjct: 253 PLEEAAKMGRARGVRGPRRGEDYAAVAPRFSHR 351 Score = 41.8 bits (85), Expect(4) = 6e-32 Identities = 20/28 (71%), Positives = 24/28 (85%) Frame = +1 / +1 Query: 418 ILTRRILRKMTQTSQLSNFG*GGLW*IE 501 ILTR+ LR+MT+TSQ SNFG* GL *I+ Sbjct: 2197 ILTRKNLRRMTRTSQRSNFG*CGLC*IK 2280 Score = 23.1 bits (44), Expect(4) = 6e-32 Identities = 9/11 (81%), Positives = 10/11 (90%) Frame = +1 / +2 Query: 544 C*LCRLI*ALD 576 C* CRLI*A+D Sbjct: 2345 C*FCRLI*AVD 2377 Score = 71.6 bits (150), Expect(3) = 1e-26 Identities = 29/34 (85%), Positives = 30/34 (88%) Frame = +1 / +1 Query: 256 NGRNLSLGGDLTSSQSSAL*KHHCPIHYQLMILW 357 NGRN SLGG L SSQ+SAL*KHHCPIH QLMILW Sbjct: 2035 NGRNQSLGGGLISSQNSAL*KHHCPIHCQLMILW 2136 Score = 61.6 bits (128), Expect(3) = 1e-26 Identities = 23/25 (92%), Positives = 24/25 (96%) Frame = +3 / +2 Query: 180 WDSLVVCVAPDEEKITRRSPLDFPI 254 WD+LVVC APDEEKITRRSPLDFPI Sbjct: 275 WDALVVCAAPDEEKITRRSPLDFPI 349 Score = 29.9 bits (59), Expect(3) = 1e-26 Identities = 11/23 (47%), Positives = 16/23 (69%) Frame = +3 / +3 Query: 462 TE*FWMRWPVVDRNILPENMWSL 530 TE*FWM W ++D+N + + SL Sbjct: 2241 TE*FWMMWVMLDKNTMFRSAISL 2309 Score = 57.9 bits (120), Expect(3) = 2e-17 Identities = 27/32 (84%), Positives = 27/32 (84%) Frame = -2 / -1 Query: 351 DHQLVMDGAMVFS*G*TLGRCQVSSQA*VSPI 256 DHQL MDGAMVFS*G* LGR Q SSQA VSPI Sbjct: 2130 DHQLAMDGAMVFS*G*ILGRYQASSQALVSPI 2035 Score = 50.1 bits (103), Expect(3) = 2e-17 Identities = 19/23 (82%), Positives = 22/23 (95%) Frame = -2 / -2 Query: 258 IRWGNRGASAA*SSPRQGPRTPR 190 +RW NRGA+AA*SSPR+GPRTPR Sbjct: 353 LRWENRGATAA*SSPRRGPRTPR 285 Score = 24.0 bits (46), Expect(3) = 2e-17 Identities = 8/13 (61%), Positives = 10/13 (76%) Frame = -1 / -3 Query: 505 IFLSTTGHLIQNY 467 +FLS H+IQNY Sbjct: 2284 VFLSNITHIIQNY 2246 Score = 58.8 bits (122), Expect(3) = 6e-17 Identities = 23/27 (85%), Positives = 25/27 (92%) Frame = +2 / +2 Query: 257 MGET*AWEET*HLPKVQPYENTIAPSI 337 MGET AWEE *+LPK+QPYENTIAPSI Sbjct: 2036 MGETKAWEEA*YLPKIQPYENTIAPSI 2116 Score = 43.7 bits (89), Expect(3) = 6e-17 Identities = 17/21 (80%), Positives = 17/21 (80%) Frame = +1 / +3 Query: 193 WCAWPLTRRRLRGARPSISPS 255 WCA P TRRRLRG RPSI PS Sbjct: 288 WCARPPTRRRLRGGRPSIFPS 350 Score = 27.6 bits (54), Expect(3) = 6e-17 Identities = 15/23 (65%), Positives = 17/23 (73%) Frame = +2 / +2 Query: 437 *GR*PRQAN*VILDEVACGR*KY 505 *G *P QAN VILD+V R*K+ Sbjct: 2216 *GG*PGQANGVILDDVGYVR*KH 2284 Score = 50.1 bits (103), Expect(3) = 5e-14 Identities = 19/21 (90%), Positives = 20/21 (95%) Frame = -1 / -3 Query: 316 FIGLNFGKMSGLLPGLGFSHS 254 FIGLNFGK+SGLLPG GFSHS Sbjct: 2095 FIGLNFGKISGLLPGFGFSHS 2033 Score = 47.8 bits (98), Expect(3) = 5e-14 Identities = 18/23 (78%), Positives = 20/23 (86%) Frame = -3 / -3 Query: 257 FDGEIEGRAPRNLLLVRGHAHHE 189 +DG+IEGR PRNLLLV G AHHE Sbjct: 352 YDGKIEGRPPRNLLLVGGRAHHE 284 Score = 22.1 bits (42), Expect(3) = 5e-14 Identities = 8/13 (61%), Positives = 9/13 (69%) Frame = -3 / -2 Query: 503 ISIYHRPPHPKLL 465 + I H P HPKLL Sbjct: 2282 VFI*HNPHHPKLL 2244
>LOC_Os07g17180:12007.t01578:unspliced-genomic no apical meristem protein, expressed| Length = 2141 Score = 28.1 bits (55), Expect(2) = 0.17 Identities = 12/17 (70%), Positives = 13/17 (76%) Frame = -2 / +2 Query: 240 GASAA*SSPRQGPRTPR 190 GA+ A SSPR GPRT R Sbjct: 188 GATRASSSPRLGPRTAR 238 Score = 25.8 bits (50), Expect(2) = 0.17 Identities = 10/16 (62%), Positives = 11/16 (68%) Frame = -3 / +1 Query: 281 PPRLRFLPFDGEIEGR 234 PP LRF P DGE+ R Sbjct: 34 PPGLRFDPTDGELVSR 81
>LOC_Os05g43640:12005.t03854:unspliced-genomic retrotransposon, putative, centromere-specific, expressed| Length = 3135 Score = 33.1 bits (66), Expect = 1.7 Identities = 13/29 (44%), Positives = 19/29 (65%) Frame = +1 / +2 Query: 214 RRRLRGARPSISPSNGRNLSLGGDLTSSQ 300 RRR RGARP P+ G + +GGD+ + + Sbjct: 2588 RRRRRGARPRAVPAAGGVVGVGGDVRAGE 2674
>LOC_Os10g41550:12010.t03390:unspliced-genomic beta-amylase, putative, expressed| Length = 3420 Score = 32.7 bits (65), Expect = 2.4 Identities = 12/21 (57%), Positives = 12/21 (57%) Frame = +1 / -1 Query: 202 WPLTRRRLRGARPSISPSNGR 264 WP RRR RG RP P GR Sbjct: 2565 WPRARRRCRGRRPRRRPGRGR 2503
>LOC_Os03g29410:12003.t02564:unspliced-genomic protein kinase APK1B, chloroplast precursor, putative, expressed| Length = 4926 Score = 32.7 bits (65), Expect = 2.4 Identities = 12/18 (66%), Positives = 12/18 (66%) Frame = +1 / -2 Query: 196 CAWPLTRRRLRGARPSIS 249 C WP TRRR GARP S Sbjct: 974 CPWPCTRRRAGGARPRSS 921
>LOC_Os02g28570:12002.t02551:unspliced-genomic hypothetical protein| Length = 4899 Score = 32.2 bits (64), Expect = 3.3 Identities = 13/30 (43%), Positives = 20/30 (66%) Frame = -2 / -1 Query: 603 FFFFAEQTYV*SLYKPTQLTFLNSSNSTYS 514 FFFFAE + SL + L F+++ N+TY+ Sbjct: 3258 FFFFAE*VHFISLNLSSSLNFISNQNTTYN 3169
>LOC_Os12g21570:12012.t01899:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass, expressed| Length = 3453 Score = 31.8 bits (63), Expect = 4.5 Identities = 16/36 (44%), Positives = 19/36 (52%) Frame = -2 / +2 Query: 300 LGRCQVSSQA*VSPIRWGNRGASAA*SSPRQGPRTP 193 L R + A*V P+R R ASA S+ R GP P Sbjct: 635 LPRATAAGSA*VMPVRARPRAASAVRSTGRSGPSNP 742
>LOC_Os09g19260:12009.t01661:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 2515 Score = 31.8 bits (63), Expect = 4.5 Identities = 14/22 (63%), Positives = 16/22 (72%) Frame = +1 / +1 Query: 211 TRRRLRGARPSISPSNGRNLSL 276 TRRR R AR S+ S GRN+SL Sbjct: 778 TRRRRRTARQSLCSSEGRNVSL 843
>LOC_Os02g06480:12002.t00546:unspliced-genomic protein SCO1, mitochondrial precursor, putative, expressed| Length = 6427 Score = 31.8 bits (63), Expect = 4.5 Identities = 16/35 (45%), Positives = 20/35 (57%) Frame = -1 / +2 Query: 250 GKSRGERRVIFSSSGATHTTSESHLRRVLAGTAAR 146 G+ G RR + +GAT S + RR AGTAAR Sbjct: 5858 GRRAGTRRRRGAGTGATRRRSRASRRRRAAGTAAR 5962
>LOC_Os02g06470:12002.t00545:unspliced-genomic F-box domain containing protein, expressed| Length = 1863 Score = 31.8 bits (63), Expect = 4.5 Identities = 16/35 (45%), Positives = 20/35 (57%) Frame = -1 / -1 Query: 250 GKSRGERRVIFSSSGATHTTSESHLRRVLAGTAAR 146 G+ G RR + +GAT S + RR AGTAAR Sbjct: 570 GRRAGTRRRRGAGTGATRRRSRASRRRRAAGTAAR 466
>LOC_Os12g12540:12012.t01122:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 2536 Score = 31.3 bits (62), Expect = 6.1 Identities = 14/30 (46%), Positives = 17/30 (56%) Frame = +3 / -1 Query: 231 RSPLDFPIEWEKPKPGRRPDIFPKFSPMKT 320 R PL FP + P RPD FPK SP ++ Sbjct: 322 RFPLPFPPFFSLSLPRIRPDSFPKSSPAQS 233
>LOC_Os10g03970:12010.t00286:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 2734 Score = 31.3 bits (62), Expect = 6.2 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = -2 / -2 Query: 564 YKPTQLTFLNSSNSTYSLEGYFY 496 Y P TF+NSSN +S++ Y Y Sbjct: 1485 Y*PRNSTFINSSNQKFSIQQYIY 1417
>LOC_Os05g18740:12005.t01641:unspliced-genomic retrotransposon protein, putative, unclassified, expressed| Length = 2744 Score = 31.3 bits (62), Expect = 6.2 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = -2 / -2 Query: 564 YKPTQLTFLNSSNSTYSLEGYFY 496 Y P TF+NSSN +S++ Y Y Sbjct: 1495 Y*PRNSTFINSSNQKFSIQQYIY 1427
>LOC_Os05g11700:12005.t01002:unspliced-genomic rf1 protein, mitochondrial precursor, putative, expressed| Length = 1188 Score = 31.3 bits (62), Expect = 6.2 Identities = 14/21 (66%), Positives = 15/21 (71%) Frame = +2 / -1 Query: 161 GEDAAQVGLARGVRGP*RGED 223 G+DAAQ GLAR RG GED Sbjct: 72 GDDAAQEGLARAERGGEPGED 10
>LOC_Os01g49420:12001.t04381:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 2144 Score = 31.3 bits (62), Expect = 6.2 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = -2 / -3 Query: 564 YKPTQLTFLNSSNSTYSLEGYFY 496 Y P TF+NSSN +S++ Y Y Sbjct: 843 Y*PKNSTFINSSNQKFSIQQYIY 775
>LOC_Os07g32710:12007.t02953:unspliced-genomic expressed protein| Length = 1402 Score = 30.9 bits (61), Expect = 8.4 Identities = 12/34 (35%), Positives = 16/34 (47%) Frame = -3 / +3 Query: 335 WMGQWCFHRAELWEDVRSPPRLRFLPFDGEIEGR 234 W+G WC+ R W R R R P+ G + R Sbjct: 894 WLGWWCWRRPWPWRWTRWRTRARRRPWWGRLRRR 995
>LOC_Os12g04700:12012.t00358:unspliced-genomic phosphatidylinositol-4-phosphate 5-kinase 4, putative, expressed| Length = 4687 Score = 30.9 bits (61), Expect = 8.5 Identities = 13/22 (59%), Positives = 13/22 (59%) Frame = +1 / -1 Query: 199 AWPLTRRRLRGARPSISPSNGR 264 AW RR G RP ISPS GR Sbjct: 1033 AWRPPTRRRTGRRPPISPSRGR 968
>LOC_Os12g03870:12012.t00278:unspliced-genomic major facilitator superfamily antiporter, putative| Length = 6230 Score = 30.9 bits (61), Expect = 8.5 Identities = 15/38 (39%), Positives = 17/38 (44%) Frame = +1 / +2 Query: 196 CAWPLTRRRLRGARPSISPSNGRNLSLGGDLTSSQSSA 309 C W RRR R S GR + GG T S SS+ Sbjct: 38 CRWRRRRRRRRRGARGACRSGGRRAAEGGSPTRSSSSS 151
>LOC_Os11g04900:12011.t00383:unspliced-genomic glycoprotein X precursor, putative, expressed| Length = 1637 Score = 30.9 bits (61), Expect = 8.5 Identities = 13/22 (59%), Positives = 13/22 (59%) Frame = +1 / -2 Query: 199 AWPLTRRRLRGARPSISPSNGR 264 AW RR G RP ISPS GR Sbjct: 928 AWRPPTRRRTGRRPPISPSRGR 863
>LOC_Os11g04840:12011.t00377:unspliced-genomic phosphatidylinositol-4-phosphate 5-kinase 4, putative, expressed| Length = 3997 Score = 30.9 bits (61), Expect = 8.5 Identities = 13/22 (59%), Positives = 13/22 (59%) Frame = +1 / -1 Query: 199 AWPLTRRRLRGARPSISPSNGR 264 AW RR G RP ISPS GR Sbjct: 877 AWRPPTRRRTGRRPPISPSRGR 812
>LOC_Os09g10930:12009.t00883:unspliced-genomic gamma response I protein, putative, expressed| Length = 4009 Score = 30.9 bits (61), Expect = 8.5 Identities = 12/21 (57%), Positives = 12/21 (57%) Frame = +1 / -3 Query: 193 WCAWPLTRRRLRGARPSISPS 255 W WP RR R RPS SPS Sbjct: 533 WWPWPRRRRTTRRRRPSPSPS 471
>LOC_Os08g36540:12008.t03394:unspliced-genomic aspartic proteinase nepenthesin-1 precursor, putative, expressed| Length = 1301 Score = 30.9 bits (61), Expect = 8.5 Identities = 13/36 (36%), Positives = 18/36 (50%) Frame = +1 / +1 Query: 196 CAWPLTRRRLRGARPSISPSNGRNLSLGGDLTSSQS 303 CAWP RRR A PS + S+ R + ++ S Sbjct: 985 CAWPWARRRTAPACPSSATSSSRTCTYSSMCNTTSS 1092
>LOC_Os07g06470:12007.t00527:unspliced-genomic nuclear transcription factor Y subunit A-10, putative, expressed| Length = 2467 Score = 30.9 bits (61), Expect = 8.5 Identities = 13/27 (48%), Positives = 16/27 (59%) Frame = +1 / -3 Query: 205 PLTRRRLRGARPSISPSNGRNLSLGGD 285 P + RR R RPS P+ GR + GGD Sbjct: 2213 PTSPRRRRRRRPSSRPATGRTPASGGD 2133 Database: tigr.seq.out Posted date: Jul 20, 2007 8:58 AM Number of letters in database: 166,841,660 Number of sequences in database: 56,278 Lambda K H 0.318 0.134 0.401 Matrix: BLOSUM62 Number of Sequences: 56278 Number of Hits to DB: 162,576,936 Number of extensions: 1941975 Number of successful extensions: 10571 Number of sequences better than 10.0: 23 Length of query: 203 Length of database: 55,613,886 Length adjustment: 48 Effective length of query: 155 Effective length of database: 52,912,542 Effective search space: 8201444010 Effective search space used: 8201444010 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.3 bits)
