ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf60n23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LOC_Os07g45260:12007.t04165:unspliced-genomic transferase, t... 39 0.067
2LOC_Os08g38810:12008.t03615:unspliced-genomic RAFTIN1a prote... 31 0.21
3LOC_Os08g01350:12008.t00035:unspliced-genomic transmembrane ... 34 1.6
4LOC_Os06g35590:12006.t03256:unspliced-genomic reticuline oxi... 34 1.6
5LOC_Os10g26180:12010.t02031:unspliced-genomic hypothetical p... 33 3.0
6LOC_Os04g40380:12004.t03602:unspliced-genomic expressed protein 33 3.0
7LOC_Os01g25250:12001.t02243:unspliced-genomic hypothetical p... 33 3.0
8LOC_Os02g48170:12002.t04401:unspliced-genomic groundhog prot... 25 3.2
9LOC_Os02g30620:12002.t02755:unspliced-genomic dnaJ domain co... 26 3.9
10LOC_Os01g52320:12001.t04659:unspliced-genomic NB-ARC domain ... 29 4.4
11LOC_Os06g18000:12006.t01672:unspliced-genomic protein kinase... 24 5.0
12LOC_Os07g10120:12007.t00886:unspliced-genomic expressed protein 32 5.7
13LOC_Os07g10030:12007.t00877:unspliced-genomic expressed protein 32 5.7
14LOC_Os07g04530:12007.t00341:unspliced-genomic GYF domain con... 32 5.7
15LOC_Os02g40900:12002.t03725:unspliced-genomic mgc10433l prot... 25 7.1
16LOC_Os10g42100:12010.t03439:unspliced-genomic pyruvate kinas... 32 7.9
17LOC_Os10g28860:12010.t02235:unspliced-genomic snRNP protein,... 32 7.9
18LOC_Os10g05780:12010.t00452:unspliced-genomic peptide transp... 32 7.9
19LOC_Os03g46760:12003.t04041:unspliced-genomic hypothetical p... 32 7.9
20LOC_Os03g22940:12003.t02041:unspliced-genomic expressed protein 32 7.9
21LOC_Os03g18970:12003.t01664:unspliced-genomic protein phosph... 32 7.9
22LOC_Os03g19330:12003.t01699:unspliced-genomic glycosyltransf... 27 8.3
23LOC_Os10g37050:12010.t02978:unspliced-genomic transposon pro... 27 8.3
24LOC_Os11g31670:12011.t02764:unspliced-genomic retrotransposo... 28 8.5
25LOC_Os02g53830:12002.t04962:unspliced-genomic MTD1, putative... 27 9.8
26LOC_Os03g05290:12003.t00402:unspliced-genomic aquaporin TIP1... 24 10.0

>LOC_Os07g45260:12007.t04165:unspliced-genomic transferase, transferring glycosyl groups, putative, expressed|
          Length = 1919
 Score = 38.6 bits (78), Expect = 0.067
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3 / +2

                                          
Query: 471 PSSTSVLHCRCGGRTPSPATWWLQSNGASPT 563
           P+S+S   C   GR  SP TWW + + A+PT
Sbjct: 734 PTSSSSTTCGSSGRWTSPGTWWRRRSTATPT 826



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>LOC_Os08g38810:12008.t03615:unspliced-genomic RAFTIN1a protein, putative, expressed|
          Length = 1699

 Score = 30.9 bits (61), Expect(2) = 0.21
 Identities = 17/45 (37%), Positives = 18/45 (40%)
 Frame = +1 / +3

                                                         
Query: 424  RSCRPRGSLLHFRG*SPRLRPCCTVAVEDEPQAQQHGGCRVTEHR 558
            R  R  G   H R   PR R      V   P   +HGG R T HR
Sbjct: 990  RGGRHEGDAAHVRVADPRRRVQVLRHVAGGPGGGRHGGARDTRHR 1124



 Score = 23.5 bits (45), Expect(2) = 0.21
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3 / +1

                                    
Query: 615  LRSTVPAAGAPLLPSSFVAVLNKE 686
            L ST+P  GAPL   +  AVL  E
Sbjct: 1129 LASTLPRGGAPLQAYAVRAVLPVE 1200



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>LOC_Os08g01350:12008.t00035:unspliced-genomic transmembrane protein 18, putative, expressed|
          Length = 2904

 Score = 34.1 bits (68), Expect = 1.6
 Identities = 14/24 (58%), Positives = 14/24 (58%)
 Frame = +3 / +2

                                   
Query: 498 RCGGRTPSPATWWLQSNGASPTYS 569
           RCG R  S  TWW  S GASP  S
Sbjct: 233 RCGRR*TSTPTWWRSSLGASPPTS 304



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>LOC_Os06g35590:12006.t03256:unspliced-genomic reticuline oxidase precursor, putative, expressed|
          Length = 2171

 Score = 34.1 bits (68), Expect = 1.6
 Identities = 12/28 (42%), Positives = 21/28 (75%)
 Frame = -2 / +2

                                       
Query: 652 SRGAPAAGTVLRSTLHHVAMLSSRCCAP 569
           ++G+P+ G+VL ST+ ++  LSS+ C P
Sbjct: 182 AKGSPSYGSVLTSTIRNLRYLSSKTCNP 265



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>LOC_Os10g26180:12010.t02031:unspliced-genomic hypothetical protein|
          Length = 802

 Score = 33.1 bits (66), Expect = 3.0
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1 / -3

                                      
Query: 181 HVADTWLSSHTRPASLAAGDHALLLPP 261
           HVA TW SS  R   ++ G H + +PP
Sbjct: 578 HVAPTWQSSQQRK*KISLGPHVIHIPP 498



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>LOC_Os04g40380:12004.t03602:unspliced-genomic expressed protein|
          Length = 923

 Score = 33.1 bits (66), Expect = 3.0
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +3 / +2

                                
Query: 468 KPSSTSVLHCRCGGRTPSPAT 530
           + SS+S   CRC GRTPS  T
Sbjct: 212 RSSSSSTFWCRCSGRTPSTTT 274



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>LOC_Os01g25250:12001.t02243:unspliced-genomic hypothetical protein|
          Length = 1572

 Score = 33.1 bits (66), Expect = 3.0
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1 / -2

                                        
Query: 496  VAVEDEPQAQQHGGCRVTEHRPLTQVHS 579
            + VE+  +  +HGGC  T H  + QVHS
Sbjct: 1004 MGVEEVGELMKHGGCGATMHGRVAQVHS 921



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>LOC_Os02g48170:12002.t04401:unspliced-genomic groundhog protein 7, putative, expressed|
          Length = 1135

 Score = 25.4 bits (49), Expect(2) = 3.2
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = +2 / -2

                           
Query: 626 CTCCRGASASF*LCCC 673
           C+CC G       CCC
Sbjct: 867 CSCCCGGCCCCCCCCC 820



 Score = 24.9 bits (48), Expect(2) = 3.2
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +3 / -3

                                
Query: 471 PSSTSVLHCRCGGRTPSPATW 533
           P  TS     C G TP+  TW
Sbjct: 983 PPPTSAAATACTGSTPAAPTW 921



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>LOC_Os02g30620:12002.t02755:unspliced-genomic dnaJ domain containing protein, expressed|
          Length = 4069

 Score = 25.8 bits (50), Expect(2) = 3.9
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3 / -1

                           
Query: 810  WMCCCRLPVRSDEEL 854
            W CCC L  + +EEL
Sbjct: 1171 WFCCCCLVDQENEEL 1127



 Score = 24.0 bits (46), Expect(2) = 3.9
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +3 / -3

                          
Query: 732  SVTISICGNMVVCL 773
            S T+SIC + ++CL
Sbjct: 1337 STTVSICTSRIICL 1296



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>LOC_Os01g52320:12001.t04659:unspliced-genomic NB-ARC domain containing protein, expressed|
          Length = 1527

 Score = 29.5 bits (58), Expect(2) = 4.4
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +2 / -2

                           
Query: 626 CTCCRGASASF*LCCC 673
           C CCR  S+S   CCC
Sbjct: 122 CNCCRRLSSSTLCCCC 75



 Score = 24.0 bits (46), Expect(2) = 4.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1 / -1

                            
Query: 175 QRHVADTWLSSHTRPAS 225
           Q+ VA  WL+ HTR A+
Sbjct: 504 QQQVAAIWLAFHTRVAA 454



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>LOC_Os06g18000:12006.t01672:unspliced-genomic protein kinase domain containing protein, expressed|
          Length = 1930

 Score = 24.4 bits (47), Expect(3) = 5.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3 / -1

                             
Query: 474 SSTSVLHCRCGGRTPSPA 527
           SS++   C CGG +P PA
Sbjct: 391 SSSAPGACGCGGASPPPA 338



 Score = 24.4 bits (47), Expect(3) = 5.0
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3 / -3

                                 
Query: 729 FSVTISICGNMVVCLVTRYRTY 794
           FS ++ +CG      V R+RTY
Sbjct: 260 FSASMYLCGTSTAPPVRRWRTY 195



 Score = 23.1 bits (44), Expect(3) = 5.0
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +1 / -2

                       
Query: 16  PTHRPDHFTPHP 51
           P H PD   PHP
Sbjct: 411 PDHEPDDPVPHP 376



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>LOC_Os07g10120:12007.t00886:unspliced-genomic expressed protein|
          Length = 4623

 Score = 32.2 bits (64), Expect = 5.7
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -1 / -1

                                  
Query: 563 SGRCSVTLQPPCCWAWGSSSTAT 495
           SGRCS   +P CCW  G+   AT
Sbjct: 327 SGRCSRWRRPTCCW**GAPGAAT 259



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>LOC_Os07g10030:12007.t00877:unspliced-genomic expressed protein|
          Length = 4718

 Score = 32.2 bits (64), Expect = 5.7
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -1 / -2

                                  
Query: 563 SGRCSVTLQPPCCWAWGSSSTAT 495
           SGRCS   +P CCW  G+   AT
Sbjct: 418 SGRCSRWRRPTCCW**GAPGAAT 350



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>LOC_Os07g04530:12007.t00341:unspliced-genomic GYF domain containing protein, expressed|
          Length = 9254

 Score = 32.2 bits (64), Expect = 5.7
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +2 / +1

                                                
Query: 569  RCTASRAEHSNMMESTTQYCTCCRGASASF*LCCCS 676
            RC ++   ++    + +  C CC  +S+S   CCCS
Sbjct: 5224 RCNSNNKCNNKCNNNRSNDCNCCNLSSSSSSSCCCS 5331



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>LOC_Os02g40900:12002.t03725:unspliced-genomic mgc10433l protein, putative, expressed|
          Length = 3370

 Score = 24.9 bits (48), Expect(2) = 7.1
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = -1 / -3

                            
Query: 533 PCCWAWGSSSTATVQHG 483
           P CW WG   TA    G
Sbjct: 479 PTCWTWGMG*TALYAAG 429



 Score = 24.0 bits (46), Expect(2) = 7.1
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = -1 / -1

                                                
Query: 443 PRGRQDRTTLDIHTCIKRNRWFPSTSPEAEETEDTRK 333
           P  RQ  T+       +R RW  STSP  + T   R+
Sbjct: 358 PPPRQPGTSTARTRPPRRARWTASTSPARQPTRVRRR 248



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>LOC_Os10g42100:12010.t03439:unspliced-genomic pyruvate kinase isozyme G, chloroplast precursor, putative,|
           expressed
          Length = 5870

 Score = 31.8 bits (63), Expect = 7.9
 Identities = 17/29 (58%), Positives = 19/29 (65%)
 Frame = -3 / -3

                                        
Query: 600 LLCSARDAVHLSKWAMLRYSAATMLLGLG 514
           LL SAR A  LS+  +LR  AAT LLG G
Sbjct: 273 LLPSARSAATLSEVEVLRERAATALLGCG 187



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>LOC_Os10g28860:12010.t02235:unspliced-genomic snRNP protein, putative|
          Length = 1107

 Score = 31.8 bits (63), Expect = 7.9
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +1 / +3

                               
Query: 430 CRPRGSLLHFRG*SPRLRPC 489
           CR RG++   +G*+PR RPC
Sbjct: 648 CRARGAVAGLQG*APRRRPC 707



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>LOC_Os10g05780:12010.t00452:unspliced-genomic peptide transporter PTR2-B, putative, expressed|
          Length = 1960

 Score = 31.8 bits (63), Expect = 7.9
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +3 / +3

                                              
Query: 531  WWLQSNGASPTYSGAQHLELSIAT*WRVLRSTVP 632
            WW +S GASP  + A     + A  WR   S  P
Sbjct: 1272 WWCRSRGASPAAAAASQCSSASAPAWRRAASPWP 1373



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>LOC_Os03g46760:12003.t04041:unspliced-genomic hypothetical protein|
          Length = 1533

 Score = 31.8 bits (63), Expect = 7.9
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1 / +3

                             
Query: 533  PCCWAWGSSSTATVQHG 483
            PCCW+W  +  A   HG
Sbjct: 1467 PCCWSWQGNGPAVATHG 1517



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>LOC_Os03g22940:12003.t02041:unspliced-genomic expressed protein|
          Length = 852

 Score = 31.8 bits (63), Expect = 7.9
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2 / +1

                                      
Query: 550 PLLCSHHVAGLGVRPPQRQCSTDVDEG 470
           P   +HH+     RPP  QCST+   G
Sbjct: 505 PRHANHHMTAAAARPPYYQCSTEAVSG 585



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>LOC_Os03g18970:12003.t01664:unspliced-genomic protein phosphatase 2C-like, putative, expressed|
          Length = 3710

 Score = 31.8 bits (63), Expect = 7.9
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = -3 / +3

                                          
Query: 501 SDSAART*TRASPTKMKKRATRPTRSNNSGY 409
           S SAART + +SPT    RAT P  S +S Y
Sbjct: 414 SPSAARTTSSSSPTASASRATLPPPSPSSPY 506



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>LOC_Os03g19330:12003.t01699:unspliced-genomic glycosyltransferase 3, putative, expressed|
          Length = 1581

 Score = 26.7 bits (52), Expect(2) = 8.3
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = +3 / -2

                                       
Query: 495 CRCGGRTPSPATWWLQSNGASPTYSGAQ 578
           CRC  R    A W   SNG  P  S A+
Sbjct: 968 CRCVTRR*MSADWSSASNGGRPESSSAK 885



 Score = 25.8 bits (50), Expect(2) = 8.3
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = +3 / -2

                                            
Query: 759 MVVCLVTRYRTYRPNEAWMCCCRLPVRSDEELP 857
           M +   TR       + W CC R   RSD  LP
Sbjct: 113 MRITTTTRGAASLAEQRWPCCRRPARRSDVTLP 15



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>LOC_Os10g37050:12010.t02978:unspliced-genomic transposon protein, putative, unclassified, expressed|
          Length = 1589

 Score = 27.2 bits (53), Expect(2) = 8.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1 / -1

                                     
Query: 175  QRHVADTWLSSHTRPASLAAGDHAL 249
            +RH AD   + H  P ++AAG+  L
Sbjct: 1394 ERHHADPLAARHVHPLAVAAGEEPL 1320



 Score = 25.4 bits (49), Expect(2) = 8.3
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2 / -2

                                      
Query: 575 TASRAEHSNMMESTTQYCTCCRGASAS 655
           TA+ + HS    ST +    CR ASAS
Sbjct: 637 TAASSSHSPKHMSTRRQNMACRNASAS 557



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>LOC_Os11g31670:12011.t02764:unspliced-genomic retrotransposon protein, putative, unclassified|
          Length = 1641

 Score = 28.1 bits (55), Expect(2) = 8.5
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -2 / +1

                                  
Query: 487  TDVDEGFTHENEEESHAADKIE 422
            TDVDEG T    +ESH A   E
Sbjct: 1543 TDVDEGDTAAQSDESHLAGDTE 1608



 Score = 24.4 bits (47), Expect(2) = 8.5
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2 / +2

                          
Query: 601 VAMLSSRCCAPE*VG 557
           V +L++RCC P  VG
Sbjct: 893 VCILTTRCCTPSFVG 937



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>LOC_Os02g53830:12002.t04962:unspliced-genomic MTD1, putative, expressed|
          Length = 2714

 Score = 27.2 bits (53), Expect(2) = 9.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3 / +3

                                 
Query: 498 RCGGRTPSPATWWLQSNGASPT 563
           RC  RT  P+T W +S   SP+
Sbjct: 375 RCRARTRGPSTPWTRSRRPSPS 440



 Score = 25.8 bits (50), Expect(2) = 9.8
 Identities = 7/33 (21%), Positives = 18/33 (54%)
 Frame = +3 / +3

                                             
Query: 735  VTISICGNMVVCLVTRYRTYRPNEAWMCCCRLP 833
            ++ S+C  +++C +  +R+   +  W  C  +P
Sbjct: 2031 LSCSMCNYLLICNIKIFRSLSLSLIWQTCLSVP 2129



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>LOC_Os03g05290:12003.t00402:unspliced-genomic aquaporin TIP1.1, putative, expressed|
          Length = 1917

 Score = 24.4 bits (47), Expect(2) = 10.0
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3 / +3

                               
Query: 606  WRVLRSTVPAAGAPLLPSS 662
            WR   S  P AG+P  PS+
Sbjct: 1191 WRASSSASPPAGSPPAPSA 1247



 Score = 24.0 bits (46), Expect(2) = 10.0
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +3 / +3

                                 
Query: 471  PSSTSVLHCRCGGRTPSPATW 533
            PSS +   C     T SP++W
Sbjct: 1119 PSSAATSPCSAASSTGSPSSW 1181


  Database: tigr.seq.out
    Posted date:  Jul 20, 2007  8:58 AM
  Number of letters in database: 166,841,660
  Number of sequences in database:  56,278
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Sequences: 56278
Number of Hits to DB: 321,312,612
Number of extensions: 4617526
Number of successful extensions: 22850
Number of sequences better than 10.0: 26
Length of query: 323
Length of database: 55,613,886
Length adjustment: 50
Effective length of query: 273
Effective length of database: 52,799,986
Effective search space: 14414396178
Effective search space used: 14414396178
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
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