ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | FLbaf51g04 |
|---|---|
| Clone Library Name | barley_pub |
>Q96RK0:CIC_HUMAN Protein capicua homolog - Homo sapiens (Human)| Length = 1608 Score = 39.7 bits (91), Expect = 0.075 Identities = 32/100 (32%), Positives = 48/100 (48%), Gaps = 8/100 (8%) Frame = +1 Query: 292 DAAPPGPPRWSIR-----GCSGSWASGSPATRTRSAATS---SPATCRSGAAARASTAPP 447 D PPGPP + G + S ++ SPA+ + SAATS T ++ + + STA P Sbjct: 511 DPEPPGPPDPPVAFGKGYGSAPSSSASSPASSSASAATSFSLGSGTFKAQESGQGSTAGP 570 Query: 448 LRSRRGRPWRSGAGGVLEGSSSARRIRRLQINLKRRQKKS 567 L RP GAGG S + R + +R++ +S Sbjct: 571 L-----RPPPPGAGGPATPSKATRFLPMDPATFRRKRPES 605
>Q6AYK1:RNPS1_RAT RNA-binding protein with serine-rich domain 1 - Rattus norvegicus| (Rat) Length = 305 Score = 38.9 bits (89), Expect = 0.13 Identities = 25/76 (32%), Positives = 39/76 (51%) Frame = +1 Query: 343 SWASGSPATRTRSAATSSPATCRSGAAARASTAPPLRSRRGRPWRSGAGGVLEGSSSARR 522 S +SGS +TR+RS++TSS + S ++ S++ SR G S + S S Sbjct: 67 SASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSP 126 Query: 523 IRRLQINLKRRQKKSQ 570 RR N +R + KS+ Sbjct: 127 SRRRHDNRRRSRSKSK 142
>Q5NVM8:RNPS1_PONPY RNA-binding protein with serine-rich domain 1 - Pongo pygmaeus| (Orangutan) Length = 305 Score = 38.9 bits (89), Expect = 0.13 Identities = 25/76 (32%), Positives = 39/76 (51%) Frame = +1 Query: 343 SWASGSPATRTRSAATSSPATCRSGAAARASTAPPLRSRRGRPWRSGAGGVLEGSSSARR 522 S +SGS +TR+RS++TSS + S ++ S++ SR G S + S S Sbjct: 67 SASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSP 126 Query: 523 IRRLQINLKRRQKKSQ 570 RR N +R + KS+ Sbjct: 127 SRRRHDNRRRSRSKSK 142
>Q99M28:RNPS1_MOUSE RNA-binding protein with serine-rich domain 1 - Mus musculus| (Mouse) Length = 305 Score = 38.9 bits (89), Expect = 0.13 Identities = 25/76 (32%), Positives = 39/76 (51%) Frame = +1 Query: 343 SWASGSPATRTRSAATSSPATCRSGAAARASTAPPLRSRRGRPWRSGAGGVLEGSSSARR 522 S +SGS +TR+RS++TSS + S ++ S++ SR G S + S S Sbjct: 67 SASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSP 126 Query: 523 IRRLQINLKRRQKKSQ 570 RR N +R + KS+ Sbjct: 127 SRRRHDNRRRSRSKSK 142
>Q4R5N1:RNPS1_MACFA RNA-binding protein with serine-rich domain 1 - Macaca fascicularis| (Crab eating macaque) (Cynomolgus monkey) Length = 305 Score = 38.9 bits (89), Expect = 0.13 Identities = 25/76 (32%), Positives = 39/76 (51%) Frame = +1 Query: 343 SWASGSPATRTRSAATSSPATCRSGAAARASTAPPLRSRRGRPWRSGAGGVLEGSSSARR 522 S +SGS +TR+RS++TSS + S ++ S++ SR G S + S S Sbjct: 67 SASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSP 126 Query: 523 IRRLQINLKRRQKKSQ 570 RR N +R + KS+ Sbjct: 127 SRRRHDNRRRSRSKSK 142
>Q15287:RNPS1_HUMAN RNA-binding protein with serine-rich domain 1 - Homo sapiens| (Human) Length = 305 Score = 38.9 bits (89), Expect = 0.13 Identities = 25/76 (32%), Positives = 39/76 (51%) Frame = +1 Query: 343 SWASGSPATRTRSAATSSPATCRSGAAARASTAPPLRSRRGRPWRSGAGGVLEGSSSARR 522 S +SGS +TR+RS++TSS + S ++ S++ SR G S + S S Sbjct: 67 SASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSP 126 Query: 523 IRRLQINLKRRQKKSQ 570 RR N +R + KS+ Sbjct: 127 SRRRHDNRRRSRSKSK 142
>Q5SXM2:SNPC4_HUMAN snRNA-activating protein complex subunit 4 - Homo sapiens (Human)| Length = 1469 Score = 38.1 bits (87), Expect = 0.22 Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 15/82 (18%) Frame = +1 Query: 316 RWSIRGCSGSWASGSPATRTRSAATSS----PATCRSGAAARASTAP-----------PL 450 RWS SGS +SGS + S+++SS P ++G RA +P P Sbjct: 517 RWSSTSSSGS-SSGSSGGSSSSSSSSSEEDEPEQAQAGEGDRALLSPQYMVPDMDLWVPA 575 Query: 451 RSRRGRPWRSGAGGVLEGSSSA 516 R +PWR GAG L G +++ Sbjct: 576 RQSTSQPWRGGAGAWLGGPAAS 597
>Q9KCU7:DPO41_BACHD DNA polymerase IV 1 - Bacillus halodurans| Length = 413 Score = 37.4 bits (85), Expect = 0.37 Identities = 49/185 (26%), Positives = 70/185 (37%), Gaps = 12/185 (6%) Frame = +3 Query: 1671 GRQIFSGDIKSMVQAEAISIRMKEYLGCEKELSPFLK----FFESSVEERRQEEIQADYQ 1838 GR IF D+ S Y E P LK SV++RR + + Y+ Sbjct: 4 GRVIFHVDMNSF------------YASVEMAYDPSLKGKAIAVAGSVKDRRGIVVTSSYE 51 Query: 1839 ATQGEARTPLPLLWQAAN-----LYTPINFELFRKEHEECMNCMVYGCGEFGSLSEYMIT 2003 A R+P+P +WQA + P NF+ +R ++ F L EY Sbjct: 52 ARAKGVRSPIP-VWQALRKCPELILIPPNFDRYRSASQKI----------FSLLEEYTPL 100 Query: 2004 VKNRTKEQVVRFDSSDGTVACTCKK---FETAGILCCHILKVYELKNVKEIPPQYFLKRL 2174 V+ V D V T KK E A + IL +L I P FL ++ Sbjct: 101 VEK------VSIDEGYMDVTTTIKKVHPLELAKEIQQRILAEMDLPCSIGIAPNKFLAKM 154 Query: 2175 STDAK 2189 ++D K Sbjct: 155 ASDMK 159
>Q9P2Y4:ZN219_HUMAN Zinc finger protein 219 - Homo sapiens (Human)| Length = 722 Score = 37.0 bits (84), Expect = 0.49 Identities = 26/70 (37%), Positives = 33/70 (47%), Gaps = 3/70 (4%) Frame = +1 Query: 301 PPGPPRWSIRGC---SGSWASGSPATRTRSAATSSPATCRSGAAARASTAPPLRSRRGRP 471 PP PP S RG SG+ S PAT A++ P + +G +R A P GR Sbjct: 561 PPEPPPPSQRGSAPQSGAKPSPQPATWVEGASSPRPPSSGAGPGSRRKPASP-----GRT 615 Query: 472 WRSGAGGVLE 501 R+G GG E Sbjct: 616 LRNGRGGEAE 625
>P50552:VASP_HUMAN Vasodilator-stimulated phosphoprotein - Homo sapiens (Human)| Length = 380 Score = 35.4 bits (80), Expect = 1.4 Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 2/96 (2%) Frame = +1 Query: 301 PPGPPRWSIRGCSGSWASGSPATRTRSAATSSPATCRSGAAARASTAPPLRSRRGRPWRS 480 PP PP + +G G A G+P A + A+ TAP S R S Sbjct: 205 PPAPPLPAAQGPGGGGA-GAPGLAAAIAGAKLRKVSKQEEASGGPTAPKAESGR-----S 258 Query: 481 GAGGVLEGSSS--ARRIRRLQINLKRRQKKSQNCQQ 582 G GG++E ++ ARR + Q+ K + +S N ++ Sbjct: 259 GGGGLMEEMNAMLARRRKATQVGEKTPKDESANQEE 294
>P46152:GATA4_RAT Transcription factor GATA-4 - Rattus norvegicus (Rat)| Length = 440 Score = 35.0 bits (79), Expect = 1.8 Identities = 25/62 (40%), Positives = 32/62 (51%) Frame = +1 Query: 301 PPGPPRWSIRGCSGSWASGSPATRTRSAATSSPATCRSGAAARASTAPPLRSRRGRPWRS 480 PP PR+S G +GS A+ + A R AA S SG AA A A R + GRP + Sbjct: 102 PPVSPRFSFPGTTGSLAAAAAAAAAREAAAYS----SSGGAAGAGLAG--REQYGRPGFA 155 Query: 481 GA 486 G+ Sbjct: 156 GS 157
>Q9TTM9:ADA1D_PIG Alpha-1D adrenergic receptor - Sus scrofa (Pig)| Length = 571 Score = 34.7 bits (78), Expect = 2.4 Identities = 21/61 (34%), Positives = 30/61 (49%) Frame = +1 Query: 331 GCSGSWASGSPATRTRSAATSSPATCRSGAAARASTAPPLRSRRGRPWRSGAGGVLEGSS 510 G SG + G+ A+ R A P T SG A + RS G P +GAGG + G++ Sbjct: 26 GGSGGGSGGAAASEGR-AVDGVPGTAGSGGVVGAGSDENNRSSAGEPGAAGAGGEVNGTA 84 Query: 511 S 513 + Sbjct: 85 A 85
>Q8JZP9:GA2L1_MOUSE GAS2-like protein 1 - Mus musculus (Mouse)| Length = 678 Score = 34.3 bits (77), Expect = 3.1 Identities = 37/100 (37%), Positives = 44/100 (44%), Gaps = 18/100 (18%) Frame = +1 Query: 283 KTRDAAPPGPPRWSIRGCSGSWAS----GSPATRTRSAATSS--------PATCRSGAAA 426 + RD PP P G S S AS G R+ +AT S P +C A+ Sbjct: 337 RPRDQLPPLPRSRRYSGDSDSSASSAQSGPMGARSDDSATGSRRERPSHRPTSCLP-ASP 395 Query: 427 RASTAPPLRSR----RGRPWRS--GAGGVLEGSSSARRIR 528 R TAP +SR RGRP + G G L SS ARR R Sbjct: 396 RRPTAPRSQSRDRLDRGRPRVAPGGRGAQLSTSSPARRTR 435
>Q5TJG6:BRD2_CANFA Bromodomain-containing protein 2 - Canis familiaris (Dog)| Length = 803 Score = 34.3 bits (77), Expect = 3.1 Identities = 21/59 (35%), Positives = 28/59 (47%) Frame = +1 Query: 295 AAPPGPPRWSIRGCSGSWASGSPATRTRSAATSSPATCRSGAAARASTAPPLRSRRGRP 471 AAPP P +G + +P T T A SPA+ A+A+ PP+R GRP Sbjct: 266 AAPPAQPLAKKKGVKRKADTTTP-TPTAILAPGSPASPPGSLEAKAARLPPMRRESGRP 323
>Q32S26:BRD2_BOVIN Bromodomain-containing protein 2 - Bos taurus (Bovine)| Length = 803 Score = 34.3 bits (77), Expect = 3.1 Identities = 21/59 (35%), Positives = 28/59 (47%) Frame = +1 Query: 295 AAPPGPPRWSIRGCSGSWASGSPATRTRSAATSSPATCRSGAAARASTAPPLRSRRGRP 471 AAPP P +G + +P T T A SPA+ G +A+ PP+R GRP Sbjct: 266 AAPPAQPLAKKKGVKRKADTTTP-TPTAILAPGSPASPPGGLEPKAARLPPVRRESGRP 323
>Q8R550:SH3K1_MOUSE SH3 domain-containing kinase-binding protein 1 - Mus musculus| (Mouse) Length = 709 Score = 33.9 bits (76), Expect = 4.1 Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 4/93 (4%) Frame = +1 Query: 340 GSWASGSPATRTRSAATSSPATCRSGAAARASTAPPLRSRRGRPWR----SGAGGVLEGS 507 G+ A+ S + S+ SSP + G A + +++P L S G+P S + E Sbjct: 598 GTMAAASSGPASLSSVASSPMSSSLGTAGQRASSPSLFSTEGKPKMEPAVSSQAAIEELK 657 Query: 508 SSARRIRRLQINLKRRQKKSQNCQQKLLRTLEE 606 R +R + +K +QK+ ++LL L+E Sbjct: 658 MQVRELRTIIETMKDQQKRE---IKQLLSELDE 687
>Q29EQ3:RNO_DROPS PHD finger protein rhinoceros - Drosophila pseudoobscura (Fruit fly)| Length = 3238 Score = 33.1 bits (74), Expect = 7.0 Identities = 23/77 (29%), Positives = 42/77 (54%) Frame = +1 Query: 337 SGSWASGSPATRTRSAATSSPATCRSGAAARASTAPPLRSRRGRPWRSGAGGVLEGSSSA 516 SGS +SG ++ ++++ S + SG+ + +S+A SRR +S G L+ S A Sbjct: 792 SGSSSSGDSSSPNGTSSSDSSSASDSGSESGSSSAASGISRR----KSTTGSPLKKQSYA 847 Query: 517 RRIRRLQINLKRRQKKS 567 R + + Q +RRQ ++ Sbjct: 848 RSVEQRQKQRQRRQSEA 864
>Q4KKX4:NCOR1_XENTR Nuclear receptor corepressor 1 - Xenopus tropicalis (Western clawed| frog) (Silurana tropicalis) Length = 2494 Score = 33.1 bits (74), Expect = 7.0 Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 5/87 (5%) Frame = +1 Query: 337 SGSWASGSPATRTRSAATSSPATCRSGAAARASTAPPLRSRR-----GRPWRSGAGGVLE 501 + S A+ +PAT T + AT++ A A PP + GR W GA + Sbjct: 591 AASTATTAPATTTSTTATTTTAALVPVAPPPEEPTPPPTQEQSLVEHGRNW--GAIAKMV 648 Query: 502 GSSSARRIRRLQINLKRRQKKSQNCQQ 582 GS S + + N KRR QQ Sbjct: 649 GSKSESQCKNFYFNYKRRHNLDNLLQQ 675
>Q0Q0E4:GATA4_CANFA Transcription factor GATA-4 - Canis familiaris (Dog)| Length = 442 Score = 33.1 bits (74), Expect = 7.0 Identities = 18/61 (29%), Positives = 29/61 (47%) Frame = +1 Query: 337 SGSWASGSPATRTRSAATSSPATCRSGAAARASTAPPLRSRRGRPWRSGAGGVLEGSSSA 516 SG + G+P+ A SP ++GA A T PP+ R P +G+ +++A Sbjct: 67 SGGGSGGAPSAAGPGAQQGSPGWSQAGADGAAYTPPPVSPRFSFPGTTGSLAAAAAAAAA 126 Query: 517 R 519 R Sbjct: 127 R 127
>Q924A2:CIC_MOUSE Protein capicua homolog - Mus musculus (Mouse)| Length = 2510 Score = 33.1 bits (74), Expect = 7.0 Identities = 29/85 (34%), Positives = 38/85 (44%), Gaps = 7/85 (8%) Frame = +1 Query: 286 TRDAAPPGPPRWSIRGCSG----SWASGSPATRTRSAATS---SPATCRSGAAARASTAP 444 T D PPGPP G +S SPA+ + S +TS T ++ + + STA Sbjct: 1416 TLDPEPPGPPDPPAAFSKGYGPTPSSSSSPASTSVSVSTSFSLGSGTFKTQESGQGSTAV 1475 Query: 445 PLRSRRGRPWRSGAGGVLEGSSSAR 519 PL RP GAGG S + R Sbjct: 1476 PL-----RPPPPGAGGPATPSKATR 1495
>Q6SPE9:SAMD1_RABIT Atherin - Oryctolagus cuniculus (Rabbit)| Length = 550 Score = 32.7 bits (73), Expect = 9.2 Identities = 23/58 (39%), Positives = 29/58 (50%), Gaps = 5/58 (8%) Frame = +1 Query: 289 RDAAPPGPPRWSIRGCSGSWAS----GSPATRTRSAATSSPATC-RSGAAARASTAPP 447 R A PP PPR G + + A P AA ++PA R+ AAA A+TAPP Sbjct: 105 RGATPPAPPRAPRGGPAAAAAPPPTPAPPPPPAPVAAAAAPARAPRAAAAAAAATAPP 162
>Q27K34:PLA2_ORYSA Protein terminal ear1 homolog - Oryza sativa (Rice)| Length = 683 Score = 32.7 bits (73), Expect = 9.2 Identities = 26/78 (33%), Positives = 35/78 (44%), Gaps = 5/78 (6%) Frame = +1 Query: 316 RWSIRGCSGSWASGSPAT---RTRSAATSSPATCRSGAAARAS--TAPPLRSRRGRPWRS 480 R S +G SGS + G R S+ A C + A+A +S TAP +S++G Sbjct: 351 RSSGKGSSGSQSKGGGNAGHERKSKGGKSAAAACSTAASASSSTATAPSKQSQKGGGGGG 410 Query: 481 GAGGVLEGSSSARRIRRL 534 G GG G S R L Sbjct: 411 GRGGSWRGQKSGWEARFL 428
>P55200:HRX_MOUSE Zinc finger protein HRX - Mus musculus (Mouse)| Length = 3966 Score = 32.7 bits (73), Expect = 9.2 Identities = 18/51 (35%), Positives = 25/51 (49%) Frame = +1 Query: 298 APPGPPRWSIRGCSGSWASGSPATRTRSAATSSPATCRSGAAARASTAPPL 450 APP PP + S A SAA+SS A+ S +++ AS+ P L Sbjct: 53 APPSPPAVAAAAAGSSGAGVPGGAAAASAASSSSASSSSSSSSSASSGPAL 103 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 519,921,087 Number of extensions: 11519423 Number of successful extensions: 33602 Number of sequences better than 10.0: 23 Number of HSP's gapped: 33515 Number of HSP's successfully gapped: 23 Length of query: 999 Length of database: 100,686,439 Length adjustment: 123 Effective length of query: 876 Effective length of database: 66,948,154 Effective search space: 58646582904 Effective search space used: 58646582904 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
